Abbas SZ, Rafatullah M, Hossain K, Ismail N, Tajarudin HA, Khalil H (2018) A review
on mechanism and future perspectives of cadmium-resistant bacteria. International
Journal of Environmental Science and Technology 15: 243-262 doi: 10.1007/s13762-017-1400-5
Abdu N, Abdullahi AA, Abdulkadir A (2016) Heavy metals and soil microbes. Environmental
Chemistry Letters 15: 65-84 doi: 10.1007/s10311-016-0587-x
Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski
K, Dwight SS, Eppig JT, Harris MA, Hill DP, Issel-Tarver L, Kasarskis A, Lewis S,
Matese JC, Richardson JE, Ringwald M, Rubin GM, Sherlock G (2000) Gene ontology: tool
for the unification of biology. The Gene Ontology Consortium. Nature genetics 25:
25-29 doi: 10.1038/75556
Besemer J, Lomsadze A, Borodovsky M (2001) GeneMarkS: a self-training method for prediction
of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory
regions. Nucleic Acids Res 29: 2607-2618 doi:
Bruins MR, Kapil S, Oehme FW (2000) Microbial resistance to metals in the environment.
Ecotoxicol Environ Saf 45: 198-207 doi: 10.1006/eesa.1999.1860
Busenlehner LS, Pennella MA, Giedroc DP (2003) The SmtB/ArsR family of metalloregulatory
transcriptional repressors: Structural insights into prokaryotic metal resistance.
FEMS Microbiol Rev 27: 131-143 doi:
Diels L, Dong Q, van der Lelie D, Baeyens W, Mergeay M (1995) The czc operon of Alcaligenes eutrophus CH34: from resistance mechanism to the removal of heavy metals. J Ind Microbiol 14:
142-153 doi:
El-Mansi M, Anderson KJ, Inche CA, Knowles LK, Platt DJ (2000) Isolation and curing
of the Klebsiella pneumoniae large indigenous plasmid using sodium dodecyl sulphate. Res Microbiol 151: 201-208
doi:
Emenike CU, Jayanthi B, Agamuthu P, Fauziah SH (2018) Biotransformation and removal
of heavy metals: a review of phytoremediation and microbial remediation assessment
on contaminated soil. Environmental Reviews 26: 156-168 doi: 10.1139/er-2017-0045
Endo G, Silver S (1995) CadC, the transcriptional regulatory protein of the cadmium
resistance system of Staphylococcus aureus plasmid pI258. J Bacteriol 177: 4437-4441 doi:
Feng G, Xie T, Wang X, Bai J, Tang L, Zhao H, Wei W, Wang M, Zhao Y (2018) Metagenomic
analysis of microbial community and function involved in cd-contaminated soil. BMC
microbiology 18: 11 doi: 10.1186/s12866-018-1152-5
Gillan DC (2016) Metal resistance systems in cultivated bacteria: are they found in
complex communities? Curr Opin Biotechnol 38: 123-130 doi: 10.1016/j.copbio.2016.01.012
Ivey DM, Guffanti AA, Shen Z, Kudyan N, Krulwich TA (1992) The cadC gene product of
alkaliphilic Bacillus firmus OF4 partially restores Na+ resistance to an Escherichia coli strain lacking an Na+/H+ antiporter (NhaA). J Bacteriol 174: 4878-4884 doi: 10.1128/jb.174.15.4878-4884.1992
Jacob JM, Karthik C, Saratale RG, Kumar SS, Prabakar D, Kadirvelu K, Pugazhendhi A
(2018) Biological approaches to tackle heavy metal pollution: A survey of literature.
Journal of environmental management 217: 56-70 doi: 10.1016/j.jenvman.2018.03.077
Khan Z, Nisar MA, Hussain SZ, Arshad MN, Rehman A (2015) Cadmium resistance mechanism
in Escherichia coli P4 and its potential use to bioremediate environmental cadmium. Applied microbiology
and biotechnology 99: 10745-10757 doi: 10.1007/s00253-015-6901-x
Kulakovskaya T (2018) Inorganic polyphosphates and heavy metal resistance in microorganisms.
World J Microbiol Biotechnol 3410.1007/s11274-018-2523-7
Lagesen K, Hallin P, Rodland EA, Staerfeldt HH, Rognes T, Ussery DW (2007) RNAmmer:
consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res 35: 3100-3108
doi: 10.1093/nar/gkm160
Lee YK, Kim HW, Liu CL, Lee HK (2003) A simple method for DNA extraction from marine
bacteria that produce extracellular materials. J Microbiol Methods 52: 245-250 doi:
10.1016/s0167-7012(02)00180-x
Lehembre F, Doillon D, David E, Perrotto S, Baude J, Foulon J, Harfouche L, Vallon
L, Poulain J, Da Silva C, Wincker P, Oger-Desfeux C, Richaud P, Colpaert JV, Chalot
M, Fraissinet-Tachet L, Blaudez D, Marmeisse R (2013) Soil metatranscriptomics for
mining eukaryotic heavy metal resistance genes. Environmental Microbiology 15: 2829-2840
doi: doi:10.1111/1462-2920.12143
Li R, Zhu H, Ruan J, Qian W, Fang X, Shi Z, Li Y, Li S, Shan G, Kristiansen K, Li
S, Yang H, Wang J, Wang J (2010) De novo assembly of human genomes with massively
parallel short read sequencing. Genome research 20: 265-272 doi: 10.1101/gr.097261.109
Li W, Jaroszewski L, Godzik A (2002) Tolerating some redundancy significantly speeds
up clustering of large protein databases. Bioinformatics (Oxford, England) 18: 77-82
doi:
Liu L, Li W, Song W, Guo M (2018) Remediation techniques for heavy metal-contaminated
soils: Principles and applicability. The Science of the total environment 633: 206-219
doi: 10.1016/j.scitotenv.2018.03.161
Liu X, Tian G, Jiang D, Zhang C, Kong L (2016) Cadmium (Cd) distribution and contamination
in Chinese paddy soils on national scale. Environmental science and pollution research
international 23: 17941-17952 doi: 10.1007/s11356-016-6968-7
Livak KJ, Schmittgen TD (2001) Analysis of relative gene expression data using real-time
quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods (San Diego, Calif) 25: 402-408 doi:
10.1006/meth.2001.1262
Lowe TM, Eddy SR (1997) tRNAscan-SE: a program for improved detection of transfer
RNA genes in genomic sequence. Nucleic Acids Res 25: 955-964 doi:
Moore CM, Gaballa A, Hui M, Ye RW, Helmann JD (2005) Genetic and physiological responses
of Bacillus subtilis to metal ion stress. Mol Microbiol 57: 27-40 doi: 10.1111/j.1365-2958.2005.04642.x
Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B (2008) Mapping and quantifying
mammalian transcriptomes by RNA-Seq. Nature methods 5: 621-628 doi: 10.1038/nmeth.1226
Nies DH (1992) Resistance to cadmium, cobalt, zinc, and nickel in microbes. Plasmid
27: 17-28 doi:
Nies DH, Nies A, Chu L, Silver S (1989) Expression and nucleotide sequence of a plasmid-determined
divalent cation efflux system from Alcaligenes eutrophus. Proceedings of the National Academy of Sciences of the United States of America
86: 7351-7355 doi:
Nucifora G, Chu L, Misra TK, Silver S (1989) Cadmium resistance from Staphylococcus aureus plasmid pI258 cadA gene results from a cadmium-efflux ATPase. Proceedings of the
National Academy of Sciences of the United States of America 86: 3544-3548 doi:
Op De Beeck M, Lievens B, Busschaert P, Rineau F, Smits M, Vangronsveld J, Colpaert
JV (2015) Impact of metal pollution on fungal diversity and community structures.
Environmental Microbiology 17: 2035-2047 doi: doi:10.1111/1462-2920.12547
Parsons C, Lee S, Jayeola V, Kathariou S (2017) Novel Cadmium Resistance Determinant
in Listeria monocytogenes. Applied and environmental microbiology 83
Peng W, Li X, Song J, Jiang W, Liu Y, Fan W (2018) Bioremediation of cadmium- and
zinc-contaminated soil using Rhodobacter sphaeroides. Chemosphere 197: 33-41 doi: 10.1016/j.chemosphere.2018.01.017
Reddy MS, Kour M, Aggarwal S, Ahuja S, Marmeisse R, Fraissinet-Tachet L (2016) Metal
induction of a Pisolithus albus metallothionein and its potential involvement in heavy metal tolerance during mycorrhizal
symbiosis. Environmental Microbiology 18: 2446-2454 doi: doi:10.1111/1462-2920.13149
Rehman MZU, Rizwan M, Hussain A, Saqib M, Ali S, Sohail MI, Shafiq M, Hafeez F (2018)
Alleviation of cadmium (Cd) toxicity and minimizing its uptake in wheat (Triticum aestivum) by using organic carbon sources in Cd-spiked soil. Environmental pollution (Barking,
Essex : 1987) 241: 557-565 doi: 10.1016/j.envpol.2018.06.005
Rensing C, Mitra B, Rosen BP (1997a) The zntA gene of Escherichia coli encodes a Zn(II)-translocating P-type ATPase. Proceedings of the National Academy
of Sciences of the United States of America 94: 14326-14331 doi:
Rensing C, Pribyl T, Nies DH (1997b) New functions for the three subunits of the CzcCBA
cation-proton antiporter. J Bacteriol 179: 6871-6879 doi:
Saha RP, Samanta S, Patra S, Sarkar D, Saha A, Singh MK (2017) Metal homeostasis in
bacteria: the role of ArsR-SmtB family of transcriptional repressors in combating
varying metal concentrations in the environment. Biometals 30: 459-503 doi: 10.1007/s10534-017-0020-3
Satarug S, Baker JR, Urbenjapol S, Haswell-Elkins M, Reilly PEB, Williams DJ, Moore
MR (2003) A global perspective on cadmium pollution and toxicity in non-occupationally
exposed population. Toxicology Letters 137: 65-83 doi: http://doi.org/10.1016/S0378-4274(02)00381-8
Silver S, Phung LT (1996) Bacterial heavy metal resistance: new surprises. Annual
review of microbiology 50: 753-789 doi: 10.1146/annurev.micro.50.1.753
Solovieva IM, Entian KD (2002) Investigation of the yvgW Bacillus subtilis chromosomal gene involved in Cd(2+) ion resistance. FEMS microbiology letters 208:
105-109 doi: 10.1111/j.1574-6968.2002.tb11068.x
Wang A, Crowley DE (2005) Global gene expression responses to cadmium toxicity in
Escherichia coli. J Bacteriol 187: 3259-3266 doi: 10.1128/jb.187.9.3259-3266.2005
Ye J, Kandegedara A, Martin P, Rosen BP (2005) Crystal structure of the Staphylococcus aureus pI258 CadC Cd(II)/Pb(II)/Zn(II)-responsive repressor. J Bacteriol 187: 4214-4221
doi: 10.1128/jb.187.12.4214-4221.2005
Yoon KP, Misra TK, Silver S (1991) Regulation of the cadA cadmium resistance determinant of Staphylococcus aureus plasmid pI258. J Bacteriol 173: 7643-7649 doi:
Yoon KP, Silver S (1991) A second gene in the Staphylococcus aureus cadA cadmium resistance determinant of plasmid pI258. J Bacteriol 173: 7636-7642 doi:
Yu X, Wei S, Yang Y, Ding Z, Wang Q, Zhao J, Liu X, Chu X, Tian J, Wu N, Fan Y (2018)
Identification of cadmium-binding proteins from rice (Oryza sativa L.). International journal of biological macromolecules 119: 597-603 doi: 10.1016/j.ijbiomac.2018.07.190
Yu X, Xu J, Liu X, Chu X, Wang P, Tian J, Wu N, Fan Y (2015) Identification of a highly
efficient stationary phase promoter in Bacillus subtilis. Scientific reports 5: 18405 doi: 10.1038/srep18405