1. Rhee J S, Jeong C B, Kim D H, et al. Immune gene discovery in the crucian carp Carassius auratus[J]. Fish & shellfish immunology, 2014, 36(1): 240-251.
2. Zhang Y, Liu J, Peng L, Ren L, Zhang H, Zou L, Liu W, Xiao Y. Comparative transcriptome analysis of molecular mechanism underlying gray to red body color formation in red crucian carp (Carassius auratus, red var.). Fish Physiol Biochem 2017; 43:1387-98.
3. Rhee JS, Jeong CB, Kim DH, Kim IlC, Lee YS, Lee C. Immune gene discovery in the crucian carp Carassius auratus. Fish & Shellfish Immunology 2014; 36: 240-51.
4. Fan J, Shan Q, Wang J, Liu S, Li L, Zheng G. Comparative pharmacokinetics of enrofloxacin in healthy and Aeromonas hydrophila-infected crucian carp (Carassius auratus gibelio). J Vet Pharmacol Ther 2017; 40: 580-2.
5. Liao X, Cheng L, Xu P, Lu GQ, Wachholtz M, Sun XW, Chen SL. Transcriptome Analysis of Crucian Carp (Carassius auratus), an Important Aquaculture and Hypoxia-Tolerant Species. Plos One 2013; 8: 62308.
6. Xiao J, Zou TM, Chen YB, Chen L, Liu SJ, Tao M, Zhang C, Zhao RR, Zhou Y, Long Y, You CP, Yan JP & Liu Y. Coexistence of diploid, triploid and tetraploid crucian carp (Carassius auratus) in natural waters. BMC Genet 2011; 12: 20.
7. Elliott DG. Integumentary system. In: Ostrander GK, editor. The Laboratory Fish. London: Academic Press; 2000. pp. 95-108.
8. Marshall WS, Bellamy D. The 50 year evolution of in vitro systems to reveal salt transport functions of teleost fish gills. Comp Biochem Physiol. 2010; 155(3): 275-280.
9. Esteban MA. An overview of the immunological defenses in fish skin. ISRN Immunology Volume 2012. Article ID 853470, 29 pages.
10. Xu Z, Parra D, Gómez D, Salinas I, Zhang YA, Jørgensen LVG, Heinecke R, Buchmann K,LaPatra S & Sunyer J. Teleost skin, an ancient mucosal surface that elicits gut-like immune responses. Proceedings of the National Academy of Sciences of the United States of America 2013; 110: 13097-102.
11. Rakers S, Gebert M, Uppalapati S, Meyer W, Maderson P, Sell AF, Kruse C. & Paus R. 'Fish matters': the relevance of fish skin biology to investigative dermatology. Exp Dermatol 2010; 19: 313-24.
12.Malachowicz M, Wenne R, Burzynski A. De novo assembly of the sea trout (Salmo trutta m. trutta) skin transcriptome to identify putative genes involved in the immune response and epidermal mucus secretion[J]. PloS one, 2017, 12(2): e0172282
13.Zhu WB, Wang LM, Dong ZJ, Chen XT, Song FB, Liu N, Yang H.& Fu JJ. Comparative transcriptome analysis identifies candidate genes related to skin color differentiation in red Tilapia. Sci Rep 2016; 6: 31347.
14. Hu Y, Li A, Xu Y, Jiang B, Lu G, Luo X. Transcriptomic variation of locally-infected skin of Epinephelus coioides reveals the mucosal immune mechanism against Cryptocaryon irritans. Fish & Shellfish Immunol 2017; 66: 398- 410.
15.Li GX, Zhao YL, Wang J, Liu BZ, Sun XL, Guo S, Feng JX. Transcriptome profiling of developing spleen tissue and discovery of immune-related genes in grass carp (Ctenopharyngodon idella). Fish & Shellfish Immunology 2017; 60: 400-10.
16. Zhou W, Zhang Y, Wen Y, Ji W, Zhou Y, Ji YC, Liu XL, Wang WM, Asim M, Liang XF, Ai TS, Lin L. Analysis of the transcriptomic profilings of Mandarin fish (Siniperca chuatsi) infected with Flavobacterium columnare with an emphasis on immune responses. Fish & Shellfish Immunology 2015. 43: 111-9.
17.Pereiro P, Balseiro P, Romero A, et al. High-throughput sequence analysis of turbot ( Scophthalmus maximus) transcriptome using 454-pyrosequencing for the discovery of antiviral immune genes[J]. PloS one, 2012, 7(5): e35369.
18. Long Y, Li Q, Zhou B, Song G, Li T, Cui Z. De novo assembly of mud loach (Misgurnus anguillicaudatus) skin transcriptome to identify putative genes involved in immunity and epidermal mucus secretion. PLoS One 2013; 8: 0056998.
19. Raj V S, Fournier G, Rakus K, et al. Skin mucus of Cyprinus carpio inhibits cyprinid herpesvirus 3 binding to epidermal cells[J]. Veterinary research, 2011, 42(1): 92.
20. Buchmann K. Immune mechanisms in fish skin against monogeneans-a model[J]. Folia Parasitologica, 1999, 46(1): 1-8.
21. Wheat C W. Rapidly developing functional genomics in ecological model systems via 454 transcriptome sequencing[J]. Genetica, 2010, 138(4): 433-451.
22. Huang L, Li G, Mo Z, Xiao P, Li J, Huang J. De Novo assembly of the Japanese flounder (Paralichthys olivaceus) spleen transcriptome to identify putative genes involved in immunity. PloS one. 2015;10(2):e0117642. doi: 10.1371/journal.pone.0117642. PubMed PMID: 25723398; PubMed Central PMCID: PMC4344349.
23. Grabherr M G, Haas B J, Yassour M, et al. Trinity: reconstructing a full-length transcriptome without a genome from RNA-Seq data[J]. Nature biotechnology, 2011, 29(7): 644–652.
24. Conesa A, Götz S, García-Gómez J M, et al. Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research[J]. Bioinformatics, 2005, 21(18): 3674-3676.
25. Tang J, Vosman B, Voorrips R E, et al. QualitySNP: a pipeline for detecting single nucleotide polymorphisms and insertions/deletions in EST data from diploid and polyploid species[J]. BMC bioinformatics, 2006, 7(1): 438.
26. Magnado ttir B. Innate immunity of fish (overview). Fish Shellfish Immunol. 2006; 20 (2): 137-51. doi: 10.1016/j.fsi.2004.09.006 PMID: 15950491
27. Aranishi F, Nakane M. Epidermal proteinases of the Japanese eel. Fish Physiol Biochem. 1997; 16(6): 471-478.
28. Hjelmeland K, Christie M, Raa J. Skin mucus protease from rainbow trout, Salmo gairdneri Richardson, and its biological significance. J Fish Biol. 1983; 23(1): 13-22.
29. Micallef G, Bickerdike R, Reiff C, Fernandes JM, Bowman AS, Martin SA. Exploring the transcriptome of Atlantic salmon (Salmo salar) skin, a major defense organ. Mar Biotechnol. 2012; 14(5): 559-69. doi: 10.1007/s10126-012-9447-2 PMID: 22527268
30. Du Y, Yi M, Xiao P, Meng L, Li X, Sun G, et al. The impact of Aeromonas salmonicida infection on innate immune parameters of Atlantic salmon (Salmo salar L). Fish Shellfish Immunol. 2015; 44(1): 307-15. doi: 10.1016/j.fsi.2015.02.029 PMID: 25725402
31. Wang Z, Gerstein M, Snyder M. RNA-Seq: a revolutionary tool for transcriptomics[J]. Nature reviews genetics, 2009, 10(1): 57.
32. Ji P, Liu G, Xu J, et al. Characterization of common carp transcriptome: sequencing, de novo assembly, annotation and comparative genomics[J]. PloS one, 2012, 7(4): e35152.
33. Salem M, Rexroad C E, Wang J, et al. Characterization of the rainbow trout transcriptome using Sanger and 454-pyrosequencing approaches[J]. BMC genomics, 2010, 11(1): 564.
34. Samanta M P, Tongprasit W, Istrail S, et al. The transcriptome of the sea urchin embryo[J]. Science, 2006, 314(5801): 960-962.
35. Shen G M, Dou W, Niu J Z, et al. Transcriptome analysis of the oriental fruit fly (Bactrocera dorsalis)[J]. PloS one, 2011, 6(12): e29127.
36. Subramanian S, Ross N W, MacKinnon S L. Myxinidin, a novel antimicrobial peptide from the epidermal mucus of hagfish, Myxine glutinosa L[J]. Marine biotechnology, 2009, 11(6): 748.
37. Zhang C X, Huang K X. Apoptosis induction on HL-60 cells of a novel polysaccharide from the mucus of the loach, Misgurnus anguillicaudatus[J]. Journal of ethnopharmacology, 2005, 99(3): 385-390.
38. Kasai K, Ishikawa T, Komata T, et al. Novel l‐amino acid oxidase with antibacterial activity against methicillin‐resistant Staphylococcus aureus isolated from epidermal mucus of the flounder Platichthys stellatus[J]. The FEBS journal, 2010, 277(2): 453-465.
39. Bai X, Mamidala P, Rajarapu S P, et al. Transcriptomics of the bed bug (Cimex lectularius)[J]. PloS one, 2011, 6(1): e16336.
40. Le Guellec D, Morvan-Dubois G, Sire J Y. Skin development in bony fish with particular emphasis on collagen deposition in the dermis of the zebrafish (Danio rerio)[J]. International Journal of Developmental Biology, 2003, 48(2-3): 217-231.
41. Schurr A. Energy metabolism, stress hormones and neural recovery from cerebral ischemia/hypoxia[J]. Neurochemistry international, 2002, 41(1): 1-8.
42. Crean J K G, Finlay D, Murphy M, et al. The role of p42/44 MAPK and protein kinase B in connective tissue growth factor induced extracellular matrix protein production, cell migration, and actin cytoskeletal rearrangement in human mesangial cells[J]. Journal of Biological Chemistry, 2002, 277(46): 44187-44194.
43. Huang G, Shi L Z, Chi H. Regulation of JNK and p38 MAPK in the immune system: signal integration, propagation and termination[J]. Cytokine, 2009, 48(3): 161-169.
44. Wang S, Wang Y, Ma J, et al. Phosvitin plays a critical role in the immunity of zebrafish embryos via acting as a pattern recognition receptor and an antimicrobial effector[J]. Journal of Biological Chemistry, 2011: jbc. M111. 247635.
45. Linden SK, Sutton P, Karlsson NG, Korolik V, McGuckin MA. Mucins in the mucosal barrier to infection. Mucosal Immunol. 2008; 1(3): 183-97. doi: 10.1038/mi.2008.5 PMID: 19079178
46. Ren L, Cui J, Wang J, et al. Analyzing homoeolog expression provides insights into the rediploidization event in gynogenetic hybrids of Carassius auratus red var.âÃâCyprinus carpio[J]. Sci Rep, 2017, 7(1).
47. Aoki T, Hirono I, Kondo H, et al. Microarray technology is an effective tool for identifying genes related to the aquacultural improvement of Japanese flounder, Paralichthys olivaceus[J]. Comparative Biochemistry and Physiology Part D: Genomics and Proteomics, 2011, 6(1): 39-43.
48. Kurobe T, Yasuike M, Kimura T, et al. Expression profiling of immune-related genes from Japanese flounder Paralichthys olivaceus kidney cells using cDNA microarrays[J]. Developmental & Comparative Immunology, 2005, 29(6): 515-523.
49. Chen J, Li C, Huang R, et al. Transcriptome analysis of head kidney in grass carp and discovery of immune-related genes[J]. BMC veterinary research, 2012, 8(1): 108.
50. Kurosaki T, Shinohara H, Baba Y. B cell signaling and fate decision[J]. Annual review of immunology, 2009, 28: 21-55.
51. Smith-Garvin J E, Koretzky G A, Jordan M S. T cell activation[J]. Annual review of immunology, 2009, 27: 591-619.