METTL3 is aberrantly overexpressed in pancreatic tumors.
To explore the role of METTL3 in pancreatic cancer, we first examined the expression level of METTL3 in pancreatic tumors. We detected 36 tumor tissues and normal para cancer tissues and found that METTL3 was significantly upregulated in the tumor tissues, as indicated by qRT-PCR (Fig. 1a) and western blot (Fig. 1b and c). Moreover, High expression of METTL3 was correlated with lymph node invasion, and the diameter of tumors (Table 1), indicating that METTL3 may possess a regulatory role in the progression of pancreatic tumors.
Table 1
General clinicopathological characteristics of patients.
Characteristics | METTL3 expression level | χ2 | P-value |
High (n = 18) | Low (n = 18) |
Age (years) | | | 2.786 | 0.095 |
≤ 50 | 7 | 12 | | |
> 50 | 11 | 6 | | |
Gender | | | 1.870 | 0.171 |
Male | 13 | 9 | | |
Female | 5 | 9 | | |
Diameter of tumor (cm) | | | 5.461 | 0.019* |
≤ 2 | 6 | 13 | | |
> 2 | 12 | 5 | | |
Pathological grading | | | 0.468 | 0.494 |
I/II | 10 | 12 | | |
III/IV | 8 | 6 | | |
Lymphatic metastasis | | | 8.000 | 0.005* |
Negative | 8 | 16 | | |
Positive | 10 | 2 | | |
Distant metastasis | | | 2.215 | 0.137 |
Negative | 15 | 11 | | |
Positive | 3 | 7 | | |
TNM stage | | | 0.554 | 0.457 |
I/II | 14 | 12 | | |
III/IV | 4 | 6 | | |
Knockdown of METTL3 inhibits pancreatic cancer cell proliferation in vitro and in vivo.
We then investigated the role of METTL3 in pancreatic cancer progression by overexpressing or knocking down the gene expression. The efficacy of the overexpression or knockdown of METTL3 in PANC-1 and BXPC-3 cells was verified by western blot (Fig. 2a). We found that overexpression of METTL3 significantly promoted cell proliferation (Fig. 2b) and clone formation (Fig. 2c), while knockdown of METTL3 inhibited cell proliferation (Fig. 2b) and clone formation (Fig. 2c). Pancreatic cancer cells overexpressed of METTL3 showed increasing migration ability, which was decreased by knockdown of METTL3 (Fig. 2d). Epithelial to mesenchymal transition (EMT), in which cancer cells lose epithelial characteristics and gain a mesenchymal phenotype, plays a crucial role in the process of the initiation of metastasis for tumor cells, and predicts poor prognosis of pancreatic cancer [16]. We then detected the EMT-related protein expression by using western blot. We found that overexpression of METTL3 decreased the E-Cadherin expression and increased the expression of Vimentin and Snail, indicating the increasing level of epithelial-mesenchymal transition of the cells, while knockdown of METTL3 showed the opposite effects (Fig. 2e and f). Moreover, in vivo studies showed that PANC-1 cells overexpressed with METTL3 showed more tumor progression in mice, and knockdown of METTL3 reduced the tumor size (Fig. 2g and h). All these data suggested that METTL3 promoted the pancreatic tumor progression.
METTL3 facilitates miR-196a expression in pancreatic cancer cells.
As m6A mark acts as a key post-transcriptional modification that promotes the initiation of miRNA biogenesis [15], we wondered if METTL3 regulated the pancreatic tumor cell proliferation through regulating the maturation of miRNAs. We then analyzed the aberrantly miRNAs expression in pancreatic cancer through the public data sets (GSE41372) (Fig. 3a and b). We found five most upregulated miRNAs (miR-145, miR-27a, miR-199a-5p, miR-150, and miR-196a) in the datasets, and verified the expressions of the miRNAs by using qRT-PCR. As shown in Fig. 3c, we found that miR-27a and miR-196a were significantly upregulated in tumor tissues, and miR-150 showed a slight upregulation in tumor tissues. We then performed the methylation RIP (MeRIP) assay with the anti-m6A antibody followed by qRT-PCR. We found that overexpression of METTL3 in PANC-1 cells resulted in obvious m6A enrichment of pri-miR-196a, indicating that METTL3 may promote miR-196a biogenesis through m6A modification (Fig. 3d). We then detected the pri-miR-196a, pre-miR-196a, and miR-196a expression in cells overexpressed or knocked down of METTL3. As shown in Fig. 3e, cells overexpressed with METTL3 showed decreased pri-miR-196a level, and METTL3 knockdown cells showed increased pri-miR-196a level. Opposite to the results of pri-miR-196a level, pre-miR-196a and miR-196a showed enhanced expression level in METTL3 overexpression cells and decreased level in METTL3 knockdown cells. MiR-196a showed a significant reduction in pancreatic tumor tissues (Fig. 3h). All these data suggested that METTL3 could promote the maturation of miR-196a.
MiR-196a is required for pancreatic cancer cell proliferation and migration in vitro.
After founding that METTL3 inducing miR-196a upregulation in pancreatic cancer, we then explored the effect of miR-196a on cancer cell proliferation and migration. We found that miR-196a accelerates pancreatic cancer cell proliferation (Fig. 4a) and clone formation (Fig. 4b and c), and treatment of miR-196a restricted cell proliferation (Fig. 4a) and clone formation (Fig. 4b and c). Pancreatic cancer cells overexpressed of miR-196a showed increasing migration ability, which was decreased by miR-196a inhibitor (Fig. 4d and e). miR-196a decreased the E-Cadherin expression and increased the expression of Vimentin and Snail, indicating the increasing level of epithelial-mesenchymal transition of the cells, while downregulation of miR-196a showed the opposite effects (Fig. 4f and g). All these data indicated that miR-196a is required for pancreatic cancer cell proliferation and migration in vitro.
CPEB3 is a direct target of miR-196a in pancreatic cancer.
To find the gene expression regulated by miR-196a in pancreatic cancer, we predicted the target gene of miR-196a by using TargetScan, miRDB, and miRTarbase (Fig. 5a). Among the 46 genes of the intersections of the three databases, we predicted that cytoplasmic polyadenylation element-binding protein 3 (CPEB3), which showed anti-tumor effects in various cancers [17, 18], may be the potential targets of miR-196a (Fig. 5b). The luciferase reporter assay showed that miR‐196a overexpression reduced the luciferase activity of wide‐type but not mutant‐type CPEB3 3′‐UTR, indicating the direct binding of miR-196a to CPEB3 3′‐UTR (Fig. 5c). Western blot further proved that miR-196a negatively regulated CPEB3 expression in pancreatic cancer cells (Fig. 5d). In PANC-1 cells, knockdown of METTL3 upregulated the expression of CPEB3, which was abolished by treatment with miR-196a mimics (Fig. 5e). Knockdown of METTL3 inhibited the pancreatic cell proliferation, which was abrogated by treatment with miR-196a mimics (Fig. 5f). miR-196a promoted pancreatic cancer cell proliferation, which was inhibited by overexpression of CPEB3 (Fig. 5f). Besides, CPEB3 was significantly downregulated in the pancreatic tumor tissues as indicated by qRT-PCR (Fig. 5g) and immunochemical staining (Fig. 5h).
METTL3 regulates pancreatic tumor progression through regulating miR-196a/CPEB3 axis in vivo.
We then verified the regulatory effect and mechanism of METTL3 in vivo. Mice were divided into five groups: Control group (NC), METTL3 knockdown (KD) group, METTL3 knockdown + miR-196a overexpression (OE) group, miR-196a overexpression (OE) group, miR-196a overexpression + CPEB3 overexpression (OE) group, with 10 mice in each group. The PANC-1 cells were transfected with METTL3 or CPEB3 knockdown lentivirus or not, and were then subcutaneously injected to the mice. miR-196a angomirs (Ribo bio; Guangzhou, China) were administrated to mice by tail injection to overexpress the miRNAs in vivo. As similar to the results of the in vitro study, knockdown of METTL3 inhibited the tumor growth in mice, which were abrogated by overexpression of miR-196a (Fig. 6a and b). miR-196a overexpression promoted tumor growth in vivo, which were inhibited by overexpression of CPEB3 (Fig. 6a and b). Knockdown of METTL3 led to the upregulation of E-Cadherin and downregulation of Vimentin and Snail, which could be abolished by overexpression of miR-196a (Fig. 6c and d); miR-196a overexpression resulted in the downregulation of E-Cadherin and upregulation of Vimentin and Snail, which were abrogated by overexpression of CPEB3 (Fig. 6c and d). Immunochemical staining of CPEB3 in the tumors showed that CPEB3 expression showed the opposite trend with the tumor progression (Fig. 6e). All these results indicated that METTL3 regulated the pancreatic tumor progression through regulating miR-196a, and eventually regulated the CPEB3 expression.