Design and cloning of the peptibody coding sequence
The MDSC binding peptibody contains a short specific peptide that is linked to the Fc domain of mouse IgG2a antibody (Gene ID: 380793) by a glycine-serine linker (GS linker) together with an IL-2 signal peptide that is located upstream of the sequence (Fig. 1a) [26]. SmaI and BstbI restriction sites were inserted upstream of the peptide and downstream of the linker sequences, respectively. Two slow codon pairs in GS linker were exchanged with a fast counterpart by only a single nucleotide change of A to T (GGAGGC to GGTGGC). In order to produce codon optimized MDSC-specific peptide and linker sequences (84 bp), three overlapping primers were designed and applied in Splicing by Overlap Extension (SOE) PCR (Bioneer, Daejeon, Korea) (Table 1). The product of each PCR was used as a template for the next PCR. The final PCR product was digested with SmaI and BstbI enzymes (Fermentas, Tokyo, Japan) and subsequently cloned into a home-made expression plasmid containing mouse IgG2a Fc and glutamine synthetase (GS) gene as a selection marker. The recombinant construct was ligated using T4 DNA ligase (Fermentas) and transformed into chemically competent E. coli DH5a host cells through heat shock approach. Positively transformed colonies were screened by colony PCR using primers designed for CMV promoter (forward primer: 5-CAGACATAATAGCTGACAGACTAAC-3) and SV40 poly-A tail (reverse primer: 5- ATACCTACCAGTTCTGCGC-3) (Bioneer). The PCR reaction was carried out with an initial melting step at 94°C for 5 min, followed by 35 cycles of denaturation at 94°C for 30 Sec, annealing at 60°C for 30 Sec, and extension at 72°C for 1 min with a final extension step at 72°C for 6 min. Moreover, the selected colonies were confirmed using the enzymatic digestion and DNA sequencing (Applied Biosystems 3500, CA, USA).
Table 1. Overlapping primers applied in SOE PCR to extend MDSC-specific peptide and linker sequences. To produce MDSC specific peptide and linker GS, the two overlapping sequences were designed and fused using the complementary part of sequences (underlined in table) in a PCR cycle. Then, the SmaI and BstbI restriction sites were joined in 5ˊ and 3ˊ ends of the product, respectively by overhanging primer pairs 1 and 2 carrying special annealing sequence of the template molecule ends. SmaI restriction site: CCCGGG, BstbI restriction site: TTCGAA.
Primer Name
|
sequence (5ˊ→3ˊ)
|
Size (bp)
|
Overlapping primer 1
|
TATGGGGCTGGTCTCTGAGCCACGGCTACCAGGTGAAGTCTGGTGGCGGTGG
|
52
|
Overlapping primer 2
|
TGATCCGCCGCCACCCGACCCACCTCCGCCCGAGCCACCGCCACCAGACTTCACCT
|
56
|
Primer 1, Forward
|
CGGGTATGGGGCTGGTCTCTGA
|
22
|
Primer 1, Reverse
|
GAATGATCCGCCGCCACCC
|
19
|
Primer 2, Forward
|
TTTTTTCCCGGGTATGGGGCTGGT
|
24
|
Primer 2, Reverse
|
CACCATTTCGAATGATCCGCCGCCA
|
25
|
Transient expression of peptibody in CHO-K1 cell line
After cloning of the peptibody sequence, DNA plasmid was gently extracted from the transformed bacterial cells using low endotoxin midiprep kit (Invitrogen, Vilnius, Lithuania). Moreover, CHO-K1 cells were cultured in RPMI-1640 medium (Gibco, Grand Island, NY, USA) supplemented with 10% fetal bovine serum (Gibco), 100 U/mL penicillin (Sigma, Darmstadt, Germany), and 100 µg/mL streptomycin (Sigma). Peptibody construct was utilized to transfect CHO-K1 cells according to the manufacturer’s instructions (Invitrogen, Carlsbad, CA, USA). Briefly, the plasmid DNA was mixed with P3000 reagent in serum free OPTI-MEM medium (Gibco) and also the lipofectamine3000 was diluted separately in OPTI-MEM medium. The two solutions were mixed and then added to the seeded cells in 12 well plate. Two days after transfection, the transient expression of recombinant peptibody in cell supernatant was checked by ELISA.
Detection of secreted peptibody in cell culture supernatant by ELISA
Briefly, the ELISA 96-well plate (Nunc, Glostrup, Denmark) was coated with 2 µg/ml of affinity purified sheep anti-mouse IgG polyclonal antibody (SinaBiotech, Tehran, Iran) for 2 hours at 37°C. After blocking, 100 µl transfected cell supernatant were added to the wells and incubated for 1.5 hour at 37°C. The plate was then incubated with horseradish peroxidase-labeled sheep anti-mouse Ig polyclonal antibody (1:1000 dilution in blocking buffer) at 37°C for 1 hour. The absorbance values were measured at 450 nm by an Anthos 2020 Microplate Reader (Biochrom, Cambridge, UK).
Stable expression of the peptibody by transfected CHO-K1 cells
The culture medium was replaced with glutamine free DMEM medium (Sigma) supplemented with 10% dialyzed FBS (HyClone™, GE Healthcare, Marlborough, MA, USA) and L-Methionine sulfoximine (MSX, 25µM) (Sigma) 48 hours post-transfection. After two weeks, the production level of the peptibody by each colony in the supernatant was measured by ELISA. Colonies with the highest expression level were selected and subcloned in 96-well plates by limiting dilution method. The final clone was cultured in serum free First CHOice medium (UGA Biopharma, Hennigsdorf, Germany) containing Feed alpha and Feed beta supplements (UGA Biopharma) and maintained for two weeks at 31°C in 5% CO2.
Purification of the peptibody from the culture supernatant by protein G column
The collected supernatant of stable CHO-K1 clone producing the peptibody was centrifuged (4000 ×g for 5 min at 4°C) and then the clear supernatant was concentrated using a stirred ultra-membrane cell with a 10-kDa cut-off (Amicon 8400, Minden, Germany) under N2 gas pressure. The concentrated sample was then passed through a HiTrap Protein G HP column (GE Healthcare). The peptibody was eluted from the protein G column by a glycine-HCl buffer (0.1M, pH 2.7). The concentration of the peptibody was determined using BCA protein assay kit (Thermo scientific, Rockford, IL, USA).
Characterization of the peptibody by SDS-PAGE and Western blot
The purified peptibody was mixed with 6X sample buffer with and without β-mercaptoethanol and boiled. The protein bands were visualized by Coomassie brilliant blue staining. Moreover, the extracted peptibody was identified by immunoblotting. After the 10% SDS-PAGE, the protein contents were transferred onto polyvinylidene difluoride (PVDF) membranes in transfer buffer (25 mM Tris; 192 mM glycine; 20% v/v methanol, pH 8.3) at 100 V for 1 hour (BioRad, Hercules, CA, USA). The membranes were blocked with 5% skim milk in PBS with 0.05% Tween20 (PBS-T) and then were individually incubated with HRP-labeled sheep anti-mouse Ig polyclonal antibody (SinaBiotech, Tehran, Iran) in the blocking buffer at 1:1000 dilution under a shaker platform for 1 hour. After repeated washing with PBS-T, the HRP-antibody bound proteins were visualized using DAB substrate kit (BioGenex, Fremont, CA, USA).
Induction of 4T1 breast cancer model
Female inbred Balb/c mice (6-8 weeks old) were obtained from Pasteur Institute of Iran (Karaj, Iran) and maintained under pathogen-free condition with a 12/12-hour light/dark cycle at 22±1°C with 50% humidity according to animal welfare guidelines. To induce murine breast tumor, 4T1 cells were cultured in RMPI-1640 medium supplemented with 7% FBS and were subsequently injected into the mammary fat pad of mice at 5×105 cells suspended in 50 µl PBS. All animal experiments were approved by the Ethical Committee of Shahid Beheshti University of Medical Sciences (IR. SBMU. MSP.REC.1396.874).
Determination of binding specificity of peptibody to MDSCs
To prepare FITC conjugate, the purified peptibody was dialyzed against bicarbonate buffer (0.1M, pH 8.3) overnight at 4°C. One milligram FITC was dissolved in 1 ml DMSO and subsequently 20 µl FITC was mixed with the peptibody (1 mg) in a final volume of 1 ml at room temperature for one hour. Next, the mixture was dialyzed against PBS overnight at 4°C [27]. Splenocytes were isolated from 4T1 tumor bearing mice 4 weeks after tumor induction using cell strainer (BD Falcon, Bedford, MA, USA). The splenocytes were then simultaneously incubated with FITC-conjugated peptibody, APC-labeled anti-CD11b (Biolegend, San Diego, CA, USA) and PE-labeled anti-Gr1antibodies (Biolegend) (1 µg/ml) for 1 hour at 4°C. Also, an irrelevant isotope matched FITC-conjugated antibody (2F9G5 clone) was used as a control for peptibody to exclude the nonspecific binding of peptibody.
In vivo depletion of MDSCs by the peptibody
The peptibody was administered intraperitoneally at a dose of 50 µg per mouse at 17, 18 and 19 days after 4T1 tumor cell challenge and a control group of mice received PBS alone. On day 20, mice were sacrificed to remove the spleens and tumor tissues. Primary tumors were cut into the 2-4 mm pieces and then dounced mechanically by a tissue grinder (Kimble Chase, Rockwood, TN, USA) to dissociate into the single cell suspensions. The isolated spleen were gently pressed through a 70 µm cell strainer using 1 ml syringe plungers. Then, isolated splenocytes and tumor cells were co-stained with anti-CD11b/Gr1 and FITC conjugated anti-CD45 antibodies (Biolegend). FACS analysis was performed using flow cytometer cell analyzer (BD Biosciences, FACS Lyrics, San Jose, CA, USA) and the data was analyzed by Flow Jo software V10 (Tree Star Inc, Ashland, OR, USA).
Statistical analysis
Statistical analyses were conducted by Graph Pad Prism 8 software (Graph Pad Software Inc., San Diego, CA, USA) using two-tailed t-test to compare MDSC percentages in treated group of mice with the control group that received PBS. P value < 0.05 was defined statistically significant and represented as *.