2.1 Animal experiment
All animal experimental procedures were approved by the Animal Trials of the Affiliated Hospital of ZunYi Medical University. We anesthetized C57/BL6 mice (18-20g; 6-8 weeks) and exposed them to irradiation on the head and neck at a dose of 10 Gy for 3 times. After 7 days of irradiation, the mice were euthanized by exsanguination prior after intraperitoneal anesthesia. The tongue tissues were immediately cut out and fixed in 4% formaldehyde solution, embedded in paraffin and sectioned[12].
The miR-199b-3p inhibitors, DDIT4 OE and DDIT4 KD (Ribobio, Guangzhou, China) were employed to assess the impacts of miR-199b-3p or DDIT4 on the model of RIOM. In brief, miR-199b-3p inhibitors (5’-TAACCAATGTGCAGACTACTGT-3’) (10 nmol) in 50 µL PBS were administered into RIOM mouse caudal veins once for 3 days to conduce miR-21 knockdown. In order to achieve up-regulated or down-regulated of DDIT4 in RIOM mice, Adeno-associated viral vectors (DDIT4 OE) or lentivirus-loaded short hairpin RNA (DDIT4 KD) were injected into RIOM mice by caudal vein. The sequence of the DDIT4 OE was consistent with the coding sequence of mouse DDIT4. The sequence of the DDIT4 KD was designed and synthesized by Ribobio (China).
2.2 Hematoxylin-Eosin (H&E) Staining
Tongue tissues were fixed in 4% paraformaldehyde for 24 h. Then, the samples were embedded in paraffin, and sectioned. The slices were immersed in 0.5% hematoxylin for 5 minutes and eosin solution for 3 minutes. Images of stained sections were observed under a light microscope (Nikon, Japan).
2.3 Immunohistochemistry (IHC) assay
Tongue tissues were fixed with 4% paraformaldehyde, sliced after paraffin embedding. The sections were incubated with antibody CD45 (Abcame, ab281586) or PCNA(Abcame, ab92552) at 4°C overnight treatment. The sections were washed with PBS and then incubated with the secondary antibody of goat anti-rabbit HRP conjugate (CST) at room temperature for 1 h, after which haematoxylin was used for the counterstain. Images of each group were viewed under a light microscope (Nikon, Japan).
2.4 Cell Culture and transfection
Human Oral keratinocytes cell line HOK was purchased from QiYi biotechnology, ShangHai. HOK was cultured in DMEM (Gibco, USA) contained 10% FBS (Gibco, USA) at 37°C in a humidified incubator under 5% CO2. si-DDIT4 (5’-ACCUUAU ACUCCAAUUCCCCC-3’), si-NC (5’-CACUGAUUUCAAAUGGUGCUAUU-3’), miR-199b-3p mimic (5’-TGTCATCAGACGTGTAACCAAT-3’), miR-199b-3p inhibitor (5’-TAACCAATGTGCAGACTACTGT-3’) and NC sequence of miR-199b-3p (5’-ACAGUAGUCUGCACAUUGGUUA-3’) were supplied by GenePharma (Shanghai, China). The pcDNA3.1 vector was used to construct DDIT4 over expression plasmid (DDIT4 OE). HOK cells were transfected with si-DDIT4 or its negative control. (When cells confluence upon to 70%, the transfection was carried out with Lipofectamine 2000 (Invitrogen, USA) or RNAiMax transfection (Invitrogen, USA). NHKs were exposed to 10 does of gamma rays three times (10 Gy*3).
2.5 Clone Formation Assay
NHKs Cells were seeded into 6-well plates with 500 cells/well and incubated with 37°C, 5% CO2 for 14 days. Subsequently, cells were fixed with 10% formaldehyde, treated with 0.1% crystal violet. At last, the number of clonies were taken by a light microscope (Olympus, Japan).
2.6 EdU assay
Cellular proliferation rate was measured by EdU assay. NHKs cells (5 × 104/well) were cultured in 24-well plates and transfected for 48 h. Then NHKs cells were fixed with 4% paraformaldehyde, Triton X-100 was used to permeabilize the nuclear membrane, and NHKs cells were blocked with goat serum for 1 h. Further, NHKs cells were stained according to the manufacturer’s suggestions.
2.7 Immunofluorescence analyses
The NHKs cells were incubated on the coverslip for 24 hours. Washing by PBS for 3 times, the NHKs cells were fixed in 4% paraformaldehyde for 15 minutes, and then fixed in 0.2% TritonX-100 for 10 minutes at 20°C. After blocking with 3% BSA for 30 minutes, incubated the DDIT4 antibody at -4°C overnight. The Alexa Fluor 488 conjugated second antibody was incubated at 20°C for 1 h. Afterwards, NHKs Cells were stained by rhodamine phalloidin for 25 mins. The nuclei of NHKs were stained with SlowFade® Gold Antifade Mountant (Thermo Fisher, S36942) for 30 mins. Finally, the samples added Anti-fade solution to prevent quenching. Imaging was performed by confocal microscopes (Leica TCS SP8).
2.8 RNA extraction and qRT-PCR
Total RNA was extracted and reverse-transcribed to cDNA by Trizol reagent and PrimeScript™RT kit (Takara, Japan). The cDNA reactions were amplified using SYBR Premix Ex TaqII (Takara, USA) by fluorescent quantitative PCR 7500 (ABI, USA). All target gene transcripts were normalized to U6 or β-actin using the 2−ΔΔCT method. The sequence was shown in Supplementary table 1.
2.9 Western blotting analysis
Tissues and cells were fully lysed with 500 µL protein lysate of RIPA:PMSF=9:1 (Beyotime, China) and placed on ice for 15 minutes. The protein concentration of the samples was determined using the BCA kit (Beyotime, China). Then, 20 µg protein samples were added to loading buffer at 95°C for 5 minutes. Protein samples were placed in SDS-PAGE gel and shifted into PVDF membranes. After blocking in 5% skim milk for 2 h, membranes incubated with the following primary antibodies at 4°C overnight, DDIT4 (ab106356, Abcam, 1:1000), TSC1/2 (ab32554, Abcam, 1:1000), p-mTOR (ab109268, Abcam, 1: 1000), mTOR (ab32028, Abcam, 1:1000), p-P70S6(sc-8416, Abcam, 1:1000), P70S6(sc-8418, Abcam, 1:1000), P-4EBP1 (ab278686, Abcam, 1:1000), 4EBP1 (ab32024, Abcam, 1:1000) and GAPDH (ab9485, Abcam, 1:1000). After incubation with secondary antibodies for 1 h, protein signal was detected by BeyoECL Moon (Beyotime, China) and quantified using ImageJ software.
2.10 miRNA prediction and dual-luciferase reporter assay
The candidate miRNA of DDIT4 was predicted with miRDB, miRwalk and TargetScan, and mmu-miR-199b-3p was chosen as a target miRNA. The wild type and mutant DDIT4 3’-UTR dual-luciferase reporter vectors were constructed. 80 ng luciferase reporter vectors and miR-199b-3p mimic or inhibitor using the lipofectamine 2000 (Invitrogen, CA, USA) were transfected into NHKs. Luciferase activity was measured after 24 h.
2.11 Data analysis
All Experimental results were repeated three times and the data were presented mean ± standard deviation (SD) and analyzed by GraphPad Prism 8. The student’s t-test or one-way ANOVA with Turkey’s test was used to measure statistical significance of differences between two groups or multiple groups, respectively. A P value < 0.05 was considered statistically significant.