Table 1 shows characteristics of the 11 visited cities, state of location at the Brazilian federation, number of inhabitants and date of each visit. The city with the lowest number of total inhabitants was Moema with 7,028 and the largest was Bom Despacho with 45,624 inhabitants, both in the state of Minas Gerais. The first cities to be visited were Major Vieira and Papanduva (Sep/2017) and the last were Buriti Bravo and Colinas (Feb/2019).
Table 2 shows the number of sequenced ICs and relatives by region and their genotype regarding the presence of pathogenic or likely pathogenic variants (Positive), no pathogenic variants (Negative) or presence of a variant of uncertain significance (VUS), as well as the number of new cases by IC. The cities with the highest number of enrolled individuals were Passagem Franca (n = 108), Papanduva (n = 103), Major Vieira (n = 96), Bom Despacho (n = 96), Moema (n = 73) and Lagoa do Mato (n = 60). The cities of Bambuí (n = 2), Buriti Bravo (n = 4), Colinas (n = 12) and Luz (n = 28) were the ones with the lowest number of enrolled individuals. Regarding the enrollment of family relatives per IC, the highest numbers were in Papanduva (n = 13.7), Moema (n = 13.6) Lagoa do Mato (n = 11) and Passagem Franca (n = 12.5). In the Hipercol Brasil program, the average number of family members per IC is 1.6.
Table 1
City locations, number of inhabitants, dates of visit, number of expected FH cases and number of found cases.
City | Brazilian Federation State | Total Inhabitants (IBGE* Census) | Visit date | N of expected cases (1:263)4 | N of positive cases found |
Bambuí | Minas Gerais | 22.709 | Dec/2018 | 86 | 2 |
Bom Despacho | Minas Gerais | 45.624 | Aug/2018 | 173 | 45 |
Buriti Bravo | Maranhão | 23.827 | Feb /2019 | 91 | 0 |
Colinas | Maranhão | 42.196 | Feb/2019 | 160 | 4 |
Lagoa do Mato | Maranhão | 10.955 | Apr/2018 | 42 | 32 |
Luz | Minas Gerais | 17.492 | Dec/2018 | 67 | 6 |
Major Vieira | Santa Catarina | 8.103 | Sep/2017 | 31 | 47 |
Moema | Minas Gerais | 7.028 | Aug/2018 | 27 | 36 |
Papanduva | Santa Catarina | 18.013 | Sep/2017 | 68 | 48 |
Passagem Franca | Maranhão | 17.296 | Apr/2018 | 66 | 50 |
Pimenta | Minas Gerais | 8.236 | Dec/2018 | 31 | 6 |
* Brazilian index of geography and statistics |
Table 2
ICs and relatives collected by region and their genotypes for the presence of pathogenic or likely pathogenic (Positive), no pathogenic variant (Negative) or VUS.
Origin | Index Cases | Relatives | Number of relatives per total of ICs | Total of genotyped individuals per city |
Negative | Positive | VUS | Negative | Positive | VUS | | |
Bambuí | 0 | 1 | 0 | 0 | 1 | 0 | 1 | 2 |
Bom Despacho | 15 | 11 | 2 | 34 | 31 | 3 | 2.3 | 96 |
Buriti Bravo | 4 | 0 | 0 | 0 | 0 | 0 | 0 | 4 |
Colinas | 6 | 1 | 1 | 1 | 3 | 0 | 0.5 | 12 |
Lagoa do Mato | 3 | 2 | 0 | 25 | 30 | 0 | 11 | 60 |
Luz | 21 | 4 | 1 | 0 | 2 | 0 | 0.08 | 28 |
Major Vieira | 1 | 3 | 0 | 48 | 44 | 0 | 23 | 96 |
Moema | 1 | 4 | 0 | 36 | 32 | 0 | 13.6 | 73 |
Papanduva | 4 | 2 | 1 | 50 | 46 | 0 | 13.7 | 103 |
Passagem Franca | 3 | 5 | 0 | 55 | 45 | 0 | 12.5 | 108 |
Pimenta | 6 | 2 | 1 | 0 | 4 | 0 | 0.4 | 13 |
Total | 64 | 35 | 6 | 249 | 238 | 3 | | 595 |
Table 3 shows the three ICs groups (negative, positive or VUS) and their clinical and biochemical data. In total, 105 ICs were sequenced, and pathogenic or likely-pathogenic variants were found in 36 (37.8%) and VUS in 5 (5.25%) individuals. Most of ICs were females (67.6%) and when the clinical and biochemical characteristics were evaluated among the three groups, there was, as expected, a statistically significant difference regarding baseline (untreated) TC and LDL-c, with the positive group presenting the highest values of TC and LDL-c respectively 382 ± 150 mg/dL and 287 ± 148 mg/dL.
Figure 2 shows the geographic distribution of the 11 cities distributed in the 3 Brazilian federation states, the number of registered cases, as well as the number of individuals genotyped and with a pathogenic variant.
Table 4 shows the clinical and biochemical characteristics of the relatives. In total, 490 relatives were enrolled, of which 240 (49%) had the same pathogenic or likely pathogenic variant as their respective IC. In the group of relatives, 55% were females and, regarding clinical and biochemical data, there was a significant difference between the positive and negative groups in all evaluated variables, showing that in the group of individuals carrying pathogenic or likely pathogenic variants, there was a greater use of lipid-lowering medications, presence of early coronary artery disease, xanthomas, xanthelasmas and corneal arcus. Baseline TC (318 ± 97 mg/dL) and LDL-c (243 ± 82 mg/dL) values were also higher in relatives with a positive genetic result.
Figure 2: Geographical distribution of cases and the rate of genotyped individuals and individuals with an identified pathogenic variant (positive).
Legend for Fig. 2: From top to bottom Brazilian federation states of Maranhão, Minas Gerais and Santa Catarina
Table 3
Clinical and biochemical characteristics of negative, positive and VUS-altered ICs.
| Negative IC | (64) | Positive IC | (36) | CI VUS | (5) | p-value |
Females % | 45 (70.3) | 64 | 21 (58.3) | 36 | 5 (100) | 5 | 0.134 |
Males % | 19 (29.7) | 64 | 15 (41.7) | 36 | - | 5 |
Age (years) | 54 ± 15 | 64 | 44 ± 19 | 36 | 56 ± 16 | 5 | 0.015 |
Use of lipid lowering drugs | 32 (50.0) | 64 | 24 (66.7) | 36 | 3 (60.0) | 5 | 0.261 |
Early CAD | 2 (3.1) | 64 | 4 (11.1) | 36 | - | 5 | 0.297 |
Xanthomas | 3 (4.7) | 64 | 3 (8.3) | 36 | 1 (20.0) | 5 | 0.365 |
Xanthelasmas | 4 (6.3) | 64 | 1 (2.8) | 36 | - | 5 | 0.696 |
Corneal arcus | 2 (3.1) | 64 | 3 (8.3) | 36 | - | 5 | 0.345 |
Current TC | 279 ± 65 | 62 | 316 ± 107 | 36 | 302 ± 28 | 5 | 0.102 |
Current LDL-c | 195 ± 56 | 64 | 234 ± 104 | 36 | 207 ± 35 | 5 | 0.051 |
Baseline TC | 322 ± 33 | 60 | 382 ± 150 | 32 | 305 ± 43 | 5 | 0.008 |
Baseline LDL-c | 233 ± 24 | 59 | 287 ± 148 | 34 | 229 ± 20 | 4 | 0.022 |
Legend for Table 3: CAD- coronary artery disease ; early CAD defined as ASCVD event < 55 and 60 years of age respectively in males and females; lipids in mg/dL; baseline lipids = untreated ; |
Table 4
Clinical and biochemical characteristics of negative and positive relatives.
| Negative relatives | N (249) | Positive relatives | N (240) | p value |
Females % | 136 (54.6) | 249 | 135 (56.3) | 240 | 0.504 |
Males % | 113 (45.4) | 249 | 105 (43.8) | 240 |
Age (years) | 40 ± 21 | 249 | 38 ± 21 | 240 | 0.710 |
In use of lipid lowering drugs | 31 (12.4) | 249 | 93 (38.8) | 240 | 0.001 |
Early CAD | 2 (0.8) | 249 | 9 (3.8) | 240 | 0.034 |
Xanthomas | 6 (2.4) | 249 | 17 (7.1) | 240 | 0.013 |
Xanthelasmas | 11 (4.4) | 249 | 34 (14.2) | 240 | 0.001 |
Corneal arcus | 1 (0.4) | 249 | 9 (3.8) | 240 | 0.009 |
Current TC | 198 ± 51 | 114 | 309 ± 86 | 127 | 0.001 |
Current LDL-c | 124 ± 42 | 192 | 233 ± 75 | 198 | 0.001 |
Baseline TC | 220 ± 191 | 97 | 318 ± 97 | 130 | 0.001 |
Baseline LDL-c | 126 ± 41 | 169 | 243 ± 82 | 178 | 0.001 |
Legend for Table 4: CAD- coronary artery disease ; early CAD defined as ASCVD event < 55 and 60 years of age respectively in males and females; lipids in mg/dL; baseline lipids = untreated
Table 5 shows all the encountered variants and the location where they were identified. In total, 21 different variants were identified with 3 variants appearing more frequently: LDLR duplication from promoter to exon 6 in Passagem Franca (49) and Lagoa do Mato (29); LDLR duplication from exon 4 to exon 8 in Major Vieira (45) and Papanduva (41); and the variant p.Asp224Asn in Bom Despacho (39) and Moema (34). These frequencies suggest that these variants have founder effects in these localities. Six homozygous patients and one compound heterozygous in trans were found.
Table 5
FH pathogenic variants, likely pathogenic variants and VUS found per city.
Gene | Variant | Variant Classification | Bambuí | Bom Despacho | Luz | Pimenta | Moema | Buriti Bravo | Colinas | Lagoa do Mato | Passagem Franca | Major Vieira | Papanduva | Total |
LDLR | Duplication from exon 4 to 8 (b) | Pathogenic | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 45b | 41 | 86 |
LDLR | Duplication from promoter to exon 6 | Pathogenic | 0 | 0 | 0 | 0 | 0 | 1 | 4 | 29 | 49a | 0 | 0 | 83 |
LDLR | p.Asp224Asn | Pathogenic | 0 | 39 | 4 | 0 | 34 | 0 | 0 | 0 | 0 | 0 | 0 | 77 |
LDLR | p.Cys222* | Pathogenic | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 5 | 5 |
LDLR | c.1359-1G > C | Pathogenic | 0 | 0 | 0 | 5 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 5 |
LDLR | p.Gly592Glu | Pathogenic | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 0 | 2 |
LDLR | p.Ala771Val | Pathogenic | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
LDLR | p.Pro699Leu | Pathogenic | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
LDLR | p.Asp601His | Likely Pathogenic | 2 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 4 |
LDLR | p.Cys34Arg | Likely Pathogenic | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
LDLR | p.Arg257Trp | Likely Pathogenic | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 |
LDLR | p.Ser854Gly | Likely Pathogenic | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 |
LDLR | c.-228G > C | VUS | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 1 |
LDLR | p.Ala30Gly | VUS | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
APOB | p.Ala2790Thr | VUS | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 |
APOB | p.Met499Val | VUS | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
PCSK9 | p.Arg237Trp | VUS | 0 | 4 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 4 |
PCSK9 | p.Arg357Cys | VUS | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
STAP1 | p.Pro176Ser | VUS | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
LDLR | p.Cys222* | Pathogenic | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1c | 1c |
LDLR | Duplication from exon 4 to 8 | Pathogenic | | | | | | | | | | | | |
PCSK9 | p.Arg215Cys | Likely Pathogenic | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1c |
APOB | p.Asp2213Asn | VUS |
APOB | p.Val3290Ile | VUS |
PCSK9 | p.Arg215Cys | Likely Pathogenic | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1c |
APOB | p.Val3293lle | VUS |
PCSK9 | p.Arg215Cys | Likely Pathogenic | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1c |
APOB | p.Asp2213Asn | VUS |
(a) 2 homozygotes (b) 4 homozygotes (c) compound heterozygous in trans. |