1. Guo XM, Luo YS. Chapter - scallops and scallop aquaculture in. Developments in Aquaculture and Fisheries Science. 2016;40:937-952.
2. Zhou LQ, Yang AG, Wang QY, Zheng YX, Liu ZH, Wu B, Sun XJ, Zheng LB. Histological research on the gonad of hermaphrodite Patinopecten yessoensis in breeding period. Chinese High Technology Letters. 2014; 24(8):874-880.
3. Xu KF, Li Q, Kong LF, Yu RH. A first-generation genetic map of the Japanese scallop Patinopecten yessoensis-based AFLP and microsatellite markers. Aquaculture Research.2008; 40:35-43.
4. Liu WD, Bao XB, Song WT, Zhou ZC, He CB,Yu XJ. The construction of a preliminary genetic linkage map in the Japanese scallop Mizuhopecten yessoensis. Hereditas (Beijing). 2009;31(6):629-637.
5. Zhou LQ, Yang AG, Liu ZH, Wang QY, Wu B, Sun XJ, Zheng LB, Zheng YX Screening the sex-related AFLP molecular markers in Patinopecten yessoensis based on the genetic linkage map. Progress in fishery sciences.2014;35(6): 103-109.
6. Yang D, Yin C, Chang YQ, Dou Y, Hao ZL, Ding J. Transcriptome analysis of male and female mature gonads of Japanese scallop Patinopecten yessonsis. Genes & genomics. 2016; 38:1041-1052.
7. Hou R, Bao ZM, Wang S, Su HL, Li Y, Du HX, Hu JJ, Wang S, Hu XL. Transcriptome sequencing and De Novo analysis for Yesso scallop (Patinopecten yessoensis) using 454 GS FLX. PLoS ONE. 2011;6(6):e21560.
8. Teaniniuraitemoana V, Huvet A, Levy P, Klopp C, Lhuillier E, Gaertner-Mazouni N, Gueguen Y, Moullac GL. Gonad transcriptome analysis of pearl oyster Pinctada margaritifera: identification of potential sex differentiation and sex determining genes. BMC Genomics. 2014;15:491.
9. Li YP, Zhang LL, SunY, Ma X, Wang J, Li RJ, Zhang MW, Wang S, Hu XL, Bao ZM. Transcriptome sequencing and comparative analysis of ovary and testis identifies potential key sex-related genes and pathways in scallop Patinopecten yessoensis. Marine Biotechnology. 2016;18(4): 453-465.
10. Chen H, Xiao GQ, Chai XL, Lin XG, Fang J, Teng SS. Transcriptome analysis of sex-related genes in the blood clam Tegillarca granosa. PLoS ONE. 2017;12(9):e0184584.
11. Langfelder P, Horvath S. WGCNA: an R package for weighted correlation network analysis. BMC Bioinformatics.2008; 9:559.
12. Yue CY, Li Q, Yu H. Gonad transcriptome analysis of the Pacific Oyster Crassostrea gigas identifies potential genes regulating the sex determination and differentiation process. Marine biotechnology.2018;20:206-219
13. Powell D, Elizur A, Knibb W. Sex-specific transcript expression in the hepatopancreas of the banana shrimp (Fenneropenaeus merguiensis). Hydrobiologia. 2018;825(1):81-90.
14. Wang N, WangRK, Wang RQ, Chen SL. Transcriptomics analysis revealing candidate networks and genes for the body size sexual dimorphism of Chinese tongue sole (Cynoglossus semilaevis). Marine Biotechnology. 2018;20:206-219.
15. Yu H, Zhao XL, Li Q. Genome-wide identification and characterization of long intergenic noncoding RNAs and their potential association with larval development in the Pacific oyster. Scientific Reports.2016;6:20796.
16. Nanda I, Kondo M, Hornung U, Asakawa S, Winkler C, Shimizu A, Shan Z, Haaf T, Shima A. A duplicated copy of DMRT1 in the sex-determining region of the Y chromosome of the medaka, Oryzias latipes. Proc Natl Acad Sci. 2002;99:11778-11783.
17. Guo Y, Cheng H, Huang X, Gao S, Yu H, Zhou R. Gene structure, multiple alternative splicing, and expression in gonads of zebrafish dmrt1. Biochem Biophys Res Commun. 2005;330:950-957.
18. Naimi A, Martinez AS, Specq ML, Mrac A, Diss B, Mathieu M, Sourdaine P. Identification and expression of a factor of the DM family in the oyster Crassostrea gigas. Comparative Biochemistry and Physiology, Part A.2009;152 :189–196.
19. Amparyup P, Klinbunga S, Jarayabhand P. Identification and expression analysis of sex-specific expression markers of Thai abalone Haliotis asinina, Linneaus, 1758. J Shellfish Res. 2010;29(3):765-773.
20. Jiang T, Hou CC, She ZY, Yang WX. The SOX gene family: function and regulation in testis determination and male fertility maintenance. Molecular Biology Reports.2013;40:2187-2194.
21. Liu XL, Zhang ZF, Shao MY, Liu JG, Muhammad F. Sexually dimorphic expression of foxl2 during gametogenesis in scallop Chlamys farreri, conserved with vertebrates. Dev Genes Evol. 2012;222:279-286.
22. Ghiselli F, Milani L, Chang PL, Hedgecock D, Davis JP, Nuzhdin SV, Passamonti M. De novo assembly of the manila clam Ruditapes philippinarum transcriptome provides new insight into expression bias, mitochondrial doubly uniparental inheritance and sex determination. Mol Biol Evol. 2012;29(2):771-786.
23. Santerre C, Sourdaine P, Adeline B, Martinez AS. Cg-SoxE and Cg-β-catenin, two new potential actors of thesex-determining pathway in a hermaphrodite lophotrochozoan, the Pacific oyster Crassostrea gigas. Comparative biochemistry and physiology. Part A.2014;167:68-76.
24. Shi Y, Liu WG, He MX. Proteome and transcriptome analysis of ovary, interersex gonads, and testis reveals potential key sex reversal/differentiation genes and mechanism in scallop Chlamys nobilis. Marine Biotechnology. 2018;20:220-245.
25. Wang R, Kaul A, Sperry AO. TLRR (lrrc67) interacts with PP1 and is associated with a cytoskeletal complex in the testis. Biol. Cell.2010;102:173-189.
26. Veitia RA. FOXL2 versus SOX9: A lifelong ‘‘battle of the sexes’’. Bioessays. 2010;32:375-380.
27. O’Hagan R, Piasecki BP, Silva M, Phirke P, Nguyen KCQ, Hall DH, Swoboda P, Barr MM. The tubulin deglutamylase CCPP-1 regulates the function and stability of sensory cilia in C. elegans. Current Biology.2011;21:1685–1694.
28. Atanassov I, Delichère C, Filatov DA, Charlesworth D, Negrutiu I, Monéger F. Analysis and evolution of two functional Y-linked loci in a plant sex chromosome system. Mol Biol Evol. 2001;18(12):2162-2168.
29. Zuercher G, Rohrbach V, Andres AC, Ziemiecki A. A novel member of the testis specific serine kinase family, tssk-3, expressed in the Leydig cells of sexually mature mice. Mechanisms of Development.2000;93:175–177.
30. Giorgi M, Pisciteili D, Rossi P, Geremia R. Purification and characterization of a low - gm 3' :5'-cyclic adenosine phosphodiesterase from post-meiotic male mouse germ cells. Biochimica et Biophysica Acta.1992;1121:178-182.
31. Peterson JF, Ghaloul-Gonzalez L, Madan-Khetarpal S, Hartman J, Surti U, Rajkovic A, Yatsenko SA. Familial microduplication of 17q23.1–q23.2 involving TBX4 is associated with congenital clubfoot and reduced penetrance in females. Am J Med Genet Part A. 2014;164A:364–369.
32. Yuan ZF, Wagner L, Poloumienko A, Bakovic M. Identification and expression of a mouse muscle-specific CTL1 gene. Gene.2004;341:305–312.
33. Ji ZL, Duan YG, Mou LS, Allam JP, Haidl G, Cai ZM. Association of heat shock proteins,heat shock factors and male infertility. Asian Pacific Journal of Reproduction.2012;1(1): 76-84.
34. Reis IMM, Mattos JJ, Garcez RC, Zacchi FL, Miguelão T, Flores-Nunes F, Toledo-Silva G, Sasaki ST, Taniguchi S, Bícego MC, Cargnin-Ferreira E, Bainy ACD. Histological responses and localization of the cytochrome P450 (CYP2AU1) in Crassostrea brasiliana exposed to phenanthrene. Aquatic Toxicology.2015;169:79–89.
35. Yao XL, EI-Samahy MA, Feng X, Zhang TT, Li FZ, Zhang GM, Pang J, Nie HT, Wang F. Expression and localization of polypeptide N-acetylgalactosaminyltransferase-like protein 5 in the reproductive organs and sperm of Hu sheep. Animal Reproduction Science. 2017; 187:159–166.
36. Zara J, Hagen FK, Hagen KGT, Wuyckhuyse BCV, Tabak LA. Cloning and Expression of Mouse UDP-GalNAc: Polypeptide N-Acetylgalactosaminyltransferase-T3. Biochemical and biophysical research Communications. 1996; 228: 38–44.
37. Ishihara A, Nishiyama N, Makita Yu, Yamauchi K. The genomic structure and the expression profile of the Xenopus laevis transthyretin gene. Gene.2012; 510:126–132.
38. Hashita T, Sakuma T, Akada M, Nakajima A, Yamahara H, Ito S, Takesako H, Nemoto N. Forkhead box A2–mediated regulation of female-predominant expression of the mouse Cyp2b9 gene. Drug Metabolism and Disposition.2008;36(6):1080-1087.
39. Mével-Ninio M, Terracoll R, Kafatos FC. The ovo gene of Drosophila encodes a zinc finger protein required for female germ line development. The EMBO Journal 1991;10(8):2259-2266.
40. Kim JS, Griswold MD. E2F and GATA-1 are required for the sertoli cell–specific promoter activity of the follicle-stimulating hormone receptor gene. Journal of Andrology.2001;22 (4): 629-639.
41. Zheng HP, Zhang Q, Liu HL, Liu WH, Sun ZW, Li SK, Zhang T. Cloning and expression of vitellogenin (Vg) gene and its correlations with total carotenoids content and total antioxidant capacity in noble scallop Chlamys nobilis (Bivalve: Pectinidae). Aquaculture. 2012; 366-367:46-53.
42. Howard DR, Fukuda M, Fukuda MN, Stanley P. The GDP-fucose: N-Acetylglucosaminide 3-α-L-Fucosyltransferases of LECll and LEC12 Chinese hamster ovary mutants exhibit novel specificities for glycolipid substrates. The Journal of Biological Chemistry.1987; 262(35):16830-16837.
43. Wei L, Li XY, Li MH, Tang YH, Wei J, Wang DS. Dmrt1 directly regulates the transcription of the testis-biased Sox9b gene in Nile tilapia (Oreochromis niloticus). Gene. 2019; 687:109–115.
44. Kim D, Pertea G, Trapnell C, Pimentel H, Kelley R, Salzberg SL. TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome biology.2013;14(4): R36.
45. Li B, Dewey C N. RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome. BMC bioinformatics. 2011;12(1): 323.
46. Sun XJ, Liu ZH, Wu B, Zhou LQ, Wang Q, Wu W, Yang AG. Differences between fast and slow muscles in scallops revealed through proteomics and transcriptomics. BMC Genomics. 2018;19:377.