Materials and Methods
All analytical grade chemicals, reagents and solvents were taken from Merk (Germany) /and were utilized as such with no purification. Benzimidazole, 5-methyl benzimidazole, 5, 6-dimethyl benzimidazole, Selenium, 1,4-dibromobutane, propyl bromide, 2-ethyl hexyl bromide, butyl bromide, hexyl bromide, DPPH (1,1-diphenyl-2-picrylhydrazyl) were purchased from Sigma Aldrich. N-Alkylated substituted and unsubstituted benzimidazolium based salts were prepared according to our reported method with minor modification[3, 7, 10]. FTIR Spectrum’s of compounds (5-12) were recorded in the range 4000–600 cm-1 using an Agilent spectrometer and NMR spectra were recorded in d6-DMSO and d6-Chloroform on Bruker 125.1 and 500 MHz spectrometers uses tetramethylsilane (TMS) as an internal reference.
Synthesis of Pro-ligands
Stirred a solution of substituted and un substituted benzimidazole (benzimidazole, 5-methyl benzimidazole and 5,6 dimethyl benzimidazole) with KOH (0.71 g, 2.6 mM) in 20 mL DMSO for 30 min. After complete mixing added 1-bromopropane, 1-bromobutane, 1-bromohexane and stir it for 3 hrs. After that, the reaction mixture was poured in 200mL distilled water. After 2-5 minutes turbidity appeared, oily product or white powder obtained (1-4). Extracted the product with a chloroform using separating funnel if the product is oily layer. After evaporation of chloroform. If precipitates appeared filter it with three piles of filter paper (sand wash it with distilled water and dry it in an oven and keep these for further use
Synthesis of salts
1, 3-dipropyl 5-methyl benzimidazolium dibromide (5)
A solution of 5-methyl-1-propyl-benzimidazole (1 g, 5.25mmol) and 4 mL bromopropane was dissolved in 30 mL 1,4 dioxane and reflux it for 18 h at 100 oC. White precipitates appeared. Filtered the precipitates and washed with 1,4 dioxane and dried in an oven. Yield: 2.1g (81%); M.P = 119-121oC. FTIR (ATR, υ, cm-1): 3009, 2932, 2782, 1456, 1434, 1265, 823, 610. 1H NMR (500 MHz, DMSO-d6, δ ppm) 1.03 (6H, m, CH3), 2.04 (4H, m, CH2), 2.62 (3H, s, CH3), 4.43 (4H, m, CH2), 7.5 (2H, t, Ar-H), 7.42 (2H, d, Ar-H, J =7.86), 9.14 (1H, s, NCHN). 13C NMR (125.1 MHz, DMSO-d6, δ ppm) 10.9, 21.8 (R-CH3), 22.6, 23.1 (R-CH2), 48.7, 48.9 (NCH2), 67.0, 112.6, 112.7, 128.8, 129.4, 131.5, 138.0 (Ar-C), 142.0 (NCN). Anal. Calcd. for C14H21N2Br2: C, 77.37; H, 9.74; N, 12.89 Found: C, 77.35; H, 9.76; N, 12.93
Synthesis of 1-butyl-3-(5-(3-butyl-5,6-dimethyl-1H-benzo[d]imidazol-3-ium-1-yl)pentyl)-5,6-dimethyl-1H-benzol imidazolium bromide (6)
Followed the same procedure as 5, but using 1-butyl-5,6-dimethyl-benzimidazole (1.5 g, 7.2 mM) and di-bromo pentane (0.5mL, 3.7mM) as second alkyl halide. White powder obtained. Yield: 2.8g (79%), M.P: 74-76 oC. FTIR (ATR, ν, cm-1): 3386, 2934, 2871, 1559, 1486, 1454, 1362, 1205, 853, 684. 1H NMR (500 MHz, DMSO-d6, δ ppm) 1.02 (6H, t, CH3, J = 7.20 Hz), 1.47 (4H, m, CH2), 1.76, (2H, m, CH2), 2.05 (4H, m, CH2), 2.24 (4H, q, CH2), 2.48 (12H, d, Ar-H, J = 12.10 Hz 4.5 (4H, t, J = 7.5 Hz, CH2), 4.7 (4H, t, CH2, J = 7.5 Hz), 7.4-7.7 (2H, s, Ar-H), 11.1 (2H, s, NCHN). 13C NMR (125.1 MHz, DMSO-d6, δ ppm) 13.54 (CH3), 19.8, 20.5, 20.7, 28.1, 31.3, (R-CH2) 46.7, 47.5 (Ar-CH3), 112.5, 113.3 (CH2), 129.8, 129.9, 137.2, 137.4 (Ar-C), 141.1 (NCN). Anal. Calcd. for C31H46Br2N4: C, 58.68; H, 7.31; N, 8.83 Found: C, 58.72; H, 7.30; N, 8.80
Synthesis of 1-(2-ethylhexyl)-3-hexyl-2,3-dihydro-1H-benzo[d]imidazol-1-ium bromide (7)
Followed the same procedure as above but using 1-hexyl-benzimidazole (1g, 4.3mM). and 2-ethyl hexyl bromide (1mL, 5.7mM) as second alkyl halide. 3 were obtained as lemon yellow color liquid on evaporation in fume hood which was converted in shiny lemon yellow sticky gel. Yield: 1.11 g (69%). FTIR (ATR, ν, cm-1): 2960, 2874, 1495, 1460, 1375, 1361, 1280, 1260, 792, 780. 1H NMR (500 MHz, DMSO-d6, δ ppm) 0.91 (3H, t, CH3, J=7.67 Hz), 1.23 (10H, m, CH2), 1.81 (2H, m, CH2), 4.22 (2H, m, CH2), 5.10 (2H, t, CH2), 7.41(1H), 7.53, 7.74, 7.81 (1H, Ar-H), 9.91 (1H, s, NCHN). 13C NMR (125.1 MHz, DMSO-d6, δ ppm) 14.21, 22.31, 25.84 (CH3), 26.17, 28.98, 29.93, 31.09, 44.51, 47.12 (CH2), 110.82, 114.27, 119.71, 121.71, 122.55, 126.93, 134.17 (Ar-C), 142.62 (N=C=N). Anal. Calcd. for C21H37BrN2: C, 63.46; H, 9.38; N, 7.05 Found : C, 63.42; H, 9.40; N, 7.01.
Synthesis of 3-butyl-1-octyl-1H-benzimidazolium bromide (8)
Followed the same procedure as 1 but using 1-butyl-benzimidazole (0.87 mL, 8.4mM) and octyl bromide (0.99mL, 5.7mM). The reaction mixture was refluxed for 48 hr continuously. A thick brown fluid is obtained by rotary evaporator. Yield 1.27g (71%), M.P 75 oC. FTIR (ATR, ν, cm-1): 3386, 2934, 2871, 1559, 1486, 1454, 1362, 1205, 853, 684. 1H NMR (500 MHz, DMSO-d6, δ ppm)1.02 (6H, t, CH3, J = 8.07 Hz), 1.48 (4H, m, CH2), 1.76 (2H, m, CH2), 2.05 (4H, m, CH2), 2.24 (4H, q, CH2), 2.48 (12H, d, CH3, J = 12.10 Hz), 4.51 (4H, t, J = 7.5 Hz, CH2), 4.70 (4H, t, J = 7.5 Hz, CH2), 7.42, 7.71 (2H, s, Ar-H), 11.11 (2H, s, NCHN). 13C NMR (125.1 MHz, DMSO-d6, δ ppm) 9.0, 56.5 62.4 (R-CH2), 117.1, 120.1, 122.3, 123.0, 126.6, 11.7 120.1 122.3 123.0 126.6 (R-CH3), 127.0 , 127.1, 128.2-128.9, 129.1, 129.3, 129.5, 129.6, 134.3, 138.9, 139.1, 139.3, 142.6 143.3 (Ar-C), 144.0 (N=C=N). Anal. Calcd. for C19H31BrN2: C, 62.12; H, 8.51; N, 7.63 Found: C, 62.18; H, 8.49; Br, N, 7.60
Synthesis of selenium adducts
Synthesis of 5-methyl-1, 3-dipropyl-benzimidazole-2(3H)-selenone (9)
5 (0.8g, 2.69 mM) was added in 50 mL distilled water and dissolved it on heating using 100 mL flask. After that, selenium powder (0.32 g, 4.06 mM) and Na2CO3 (0.71g, 6.7 mM) were added and refluxed for 7 h. White color precipitates were separated and dried. Washing was done by distilled water (3 × 5 mL). M.P= 89-91oC. FTIR (ATR, ν, cm-1): 3010, 2923, 2782, 1464, 1424, 1265, 823, 610. 1H NMR (500 MHz, DMSO-d6, δ ppm) 0.93 (6H, t, CH3, J=7.81 Hz), 1.85 (2H, m, CH2), 2.01 (2H, m, CH2), 4.31 (2H, t, CH2), 4.56 (4H, t, CH2), 7.03 (1H, s, Ar-H), 7.11, 7.42 (2H, d, Ar-H). 13C NMR (125.1 MHz, DMSO-d6, δ ppm) 11.0, 11.3, 21.5, 21.8 (CH3), 22.7, 22.8 (Ar-CH3), 47.9, 48.1, 48.8, 48.9 (N-CH2, CH2), 109.3, 109.8, 112.6, 112.7 (Ar-CH3), 129.4, 131.1, 131.5, 133.1, 138.1, (Ar-C), 164.5 (C=Se). Anal. Calcd. for C14H20N2Se: C, 56.95; H, 6.83; N, 9.49 Found C, 56.91; H, 6.78; N, 9.56
Synthesis of 1-butyl-3-octyl-1H-benzimidazole-selenone (10)
‘Synthesis of 10 followed the same procedure as 9 but using 6 (1.6g, 2.71 mM) and selenium powder (0.321 g, 4.07mM) and Na2CO3 (0.572g, 5.39 mM) and refluxed it for 5 h. After 5 h some black oily layer present above the reaction mixture Now separate it by solvent extraction method using chloroform. A dark brown solution is obtained. Filter it by using three layers of filter paper then from celite. Thick brown colour liquid is obtained. Yield: 0.51g (64 %). FTIR (ATR, υ, cm-1): 3010 2923, 2782, 1464, 1424, 1265, 823, 610. 1H NMR (500 MHz, DMSO-d6, δ ppm) 1.46 (6H, t, CH3), 1.96 (12H, m, CH2), 4.52 (4H, m, CH2), 6.41 (4H, t, CH2), 7.37 (2H, d, Ar-H, J= 11.28 Hz), 7.86 (2H, t, Ar-H, J= 8.57 Hz). 13C NMR (125.1 MHz, DMSO-d6, δ ppm) 34.7 (Ar-CH3), 42.6 (N-CH2, CH2), 107.6, 121.1, 126.7, 127.1, 127.3, 129.1 129.8, 138.2, (Ar-C), 153.4 (C=Se). Anal. Calcd. for C19H30N2Se: C, 62.45; H, 8.28; N, 7.67 Found: C, 62.46; H, 8.32; N, 7.71
Synthesis of 1-(2-ethylhexyl)-3-hexyl-1H-benzimidazole-2(3H)-selenone (11)
Synthesis followed the same procedure as above but using 7 (1g, 3.2mM), selenium metal powder (0.24 g, 3.04mM) and Na2CO3 (0.44g, 4.15 mM) and refluxed for 4 h. After 4 h dark brown oily layer is formed. To remove unreacted selenium metal filter, the reaction mixture by using celite. Extarction of oily layer was done by solvent extraction method using chloroform as solvent. Washing was done by acetonitrile (3 × 5 mL). A thich dark brown liquid is obtained. Filter it by using three layers of filter paper then from celite. Light brown colour liquid is obtained. Yield: 0.61 g (71 %). FTIR (ATR, υ, cm-1): 3137, 2934, 1508, 1456, 1200, 1070, 1002, 880, 837, 636, 622. 1H NMR (500 MHz, DMSO-d6, δ ppm) 1.46 (6H, t, CH3), 1.96 (8H, m, CH2), 3.63 (8H, m, CH2) 4.12 (1H, m, CH2), 2.41 (4H, m, CH2), 7.37 (2H, m, Ar-H), 7.86 (2H, d, J = 8.57 Hz, Ar-H). 13C NMR (125.1 MHz, DMSO-d6, δ ppm) 22.5, 26.1 (Ar-CH3), 36.5, 43.6, 45.9 (N-CH2), 109.0, 110.0, 123.1, 132.2, 133.0 (Ar-C), 169.8 (C=Se). Anal. Calcd. for C21H34N2Se: C, 64.10; H, 8.71; N, 7.12 Found: C, 64.12; H, 8.69; N, 7.08 ``
Synthesis of 3,3'-(pentane-1,5-diyl) bis(1-butyl-5,6-dimethyl benzimidazole-2(3H)-selenone) (12)
Synthesis of 12 followed the same procedure as 9 but using 8 (0.6g, 0.94 mM) and selenium metal powder (0.3 g, 3.8 mM) and Na2CO3 (0.4g, 3.8 mM) for 5 hr. After 5 hr some black oily layer was present above the reaction mixture. Black bead was present with magnetic stirrer. Now separate it by solvent extraction method using chloroform. Bead dissolved in chloroform. A black solution is obtained. Filter it by using three layers of filter paper. Light yellow color solution is obtained. Pass it from celite. Lighter color is obtained. Cover it with paraffin film with two small holes for evaporation. After ten days’ beige color powder is obtain. Yield: 0.71 g (68 %). M.P= 96-98 oC. FTIR (ATR, υ, cm-1): 3011, 2924, 2781, 1463, 1425, 1261, 821, 609. 1H NMR (500 MHz, DMSO-d6, δ ppm) 0.96 (6H, t, CH3), 1.28 (14H, m, CH2), 1.98 (4H, t, CH2) 4.52 (4H, m, CH2), 6.39 (4H, s, CH2), 7.62- 7.75 (4H, t, Ar-H, J = 8.57 Hz), 7.91 (2H, d, J=6.11 Hz), 8.24 (2H, d, J= 3.54 Hz, Ar-H). 13C NMR (125.1 MHz, DMSO-d6, δ ppm) 22.6, 22.8, 25.5 (CH3-R), 37.8, 39.4, 39.5, 49.5 (CH2-R), 112.5, 113.2 (CH3), 129.6, 129.7 137.1, 137.3, 140.4 (Ar-C), 162.4 (C=Se). Anal. Calcd. for C31H44N4Se2: C, 59.04; H, 7.03; N, 8.88. Found: C, 59.01; H, 7.09; N, 8.80
EXPERIMENTAL PHYSICOCHEMICAL PROPERTIES
Antibacterial study
Bacterial potential of compounds 5-12 were evaluated against Bacillus subtilis, Macrococcus brunensis and Bacillus cereus, as previously described (Wiegand et al., 2008), using the inhibition zone and minimum inhibitory concentration (MIC) test. Bacterial suspensions were prepared by inoculating fresh LB broth with a loop full of fresh colonies of Luria Bertani (LB) agar and growing overnight at 37 °C. Overnight, 100 ml of bacterial culture was transferred to10 ml fresh
LB broth and incubated at 37°C till
the turbidity met the mcfarland standards of 0.5. The final MIC concentration evaluated for each sample was then adjusted using bacterial cultures. The MIC concentrations examined were 1.0 mg per ml, 500 mg per ml, 250 mg per ml, 125 mg per ml, 62.50 mg per ml, 31.25 mg per ml, and 15.63 mg per ml. After an overnight incubation at 37 °C, bacterial growth and inhibition were observed.
Hemocompatibility Assay
Benzimidazolium based salts and their respective selenium adducts (5-12) were investigated according to 10993-4 ISO standards by evaluating hemolytic potentials after exposing to blood of normal mouse using previously developed method with minor modification [21]. Blood samples of different concentrations were centrifuge for 5 min at 5000 rpm and were added in erythrocyte suspension which is prepared by adding PBS and incubate it for 30 minutes and after that centrifuged it for 5 min at 13000 rpm, at 540nm free hemoglobin from supernatant was investigated using spectrophotometer. PBS and X-100 Triton were taken as control (negative and positive). Percentage hemolysis was measured according to the following equation [22]

AOs=Sample’s absorbance
ACn=Negative control’s absorbance
ACp=Positive control’s absorbance
Thrombolytic assay
Thrombolysis was performed according to already reported method with little modification [20]. 1 mL of normal mouse blood was incubated at 37°C for 40 min and allowed it to clot. After formation of clot, serum was removed and the weight of clot is measured by equation

Now, 10 mL of DMSO and 100 μL solution of test sample was added in clot and incubated for 3
hr at 37°C. Afterward, by discarding the liquid, the tube was weighed (X) again. Percentage of thrombolysis was calculated by taking ratio of X and Y. Sreptokinase and Distilled water were used as control (positive and negative).
X = weight of colt before lysis
Y = weight of clot after lysis
Z = Weight of eppendorf