Microorganism, growth conditions, and phage preparation
S. aureus ATCC25923 and previously isolated phage pSa-3 were used for the experiments in this study [26, 27]. LB broth and agar medium were used for the culture of the host bacteria and bacteriophages pSa-3. For phage preparation, 1% (2 × 108 CFU) of overnight (~18 h) bacterial culture adjusted to 2 × 108 CFU and serial dilutions of phage solution (102-107 PFU/mL) were co-inoculated in fresh LB broth and incubated overnight at 37 °C under shaking conditions (150 rpm). The culture was centrifuged (14,000 × g), filtered (0.45 μm), and purified using the PEG precipitation method [41]. A high concentration (~1010 PFU/mL) of the phage solution was stored at 4 °C for further use.
Growth of bacteria and enumeration of bacteriophages
Bacterial growth and the concentration of the phages were examined periodically (0, 1, 3, 5, 7, 9, 12, and 24 h). For bacterial growth, OD was measured at 600 nm using a spectrophotometer (Biorad SmartSpecTM Plus, USA), and the number of phages was determined using a standard double layer agar plaque assay. Briefly, 100 μL of each of the diluted samples and the overnight bacterial culture were inoculated to the top agar (0.4% agar) and poured into the bottom agar (1.5% agar) plate. After overnight incubation at 37 °C, the number of plaques was counted.
Effect of MOI on phage amplification
The effect of MOI on phage amplification was examined with various combinations of bacterial inoculum and phage MOI after maintaining the bacteria-bacteriophage co-culture for 24 h. Briefly, 100 mL of fresh LB broth was inoculated with overnight bacterial culture (adjusted to 2 × 108, 1 × 109, and 2 × 109 CFU/mL) and phage with different MOI (0.01, 0.0001, 0.000001, and 0.00000001 at each bacterial inoculum concentration). At each time point (0, 1, 3, 5, 7, 9, 12, and 24 h), the bacterial growth and amplification of phage were calculated as mentioned above.
Effect of growth medium source on phage amplification
To select the optimal nutritional sources, we adapted one-factor-at-a-time method, which is used for conventional scale up processes. This approach is conducted by replacing one nutritional factor in the basal medium, while all the other factors are kept constant. In the experiments with carbon source, basal medium was supplemented with 0.5% (w/v) of glucose, sucrose, fructose, glycerol, and galactose, individually. To assess the effect of nitrogen sources, LB was supplemented with 0.1% (w/w) of casamino acid, peptone, gelatin, and glycine, individually. We also examined different surfactants (Tween 20, triton X-100, and SDS) at a concentration of 0.01% (v/v) to maximize the host strain surface for easy phage adherence. The influence of divalent cations on bacteriophage production was investigated by supplementing 0.01 M of calcium chloride or magnesium chloride to LB medium.
Determination of specific growth rate (μ)
To determine the specific growth rate (μ), the overnight bacterial culture was inoculated and cultured in fresh medium containing the above-mentioned supplements. The μ value was established as previously described, where μ = (△lnOD600)△time-1 [42].
Experimental design for optimization of phage amplification
To determine the optimal levels of the selected variables, experimental design was carried out according to the central composite design method of RSM coded in Minitab (v16.2) software. Among the variables, glycerol, glycine, and calcium chloride were selected as the carbon, nitrogen, and ion source, respectively, as they displayed the highest phage production. The experimental setup consisted of 20 trials (Table 2), and all the experiments were conducted in triplicates. A second order polynomial equation was used for the analysis of phage production:
Y=b_0+∑bi Xi+∑bii Xi2+∑bijXiXj
where, Y is the predicted response, b0 is the constant, bi is the linear coefficient, bii is the quadratic coefficient, bij is the interaction coefficient, Xi is the independent variable, Xi2 is the squared effect, and XiXj is the interaction effect. The quadratic model was visualized as counterplots, and response surface curve was generated using Minitab (v16.2) for each variable. The correlation between μ and yield was analyzed using the regression model in the same software. Statistical analysis of the model was conducted using ANOVA and p < 0.05 was considered as significant.