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Shiwei Zhang
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ORCiD: https://orcid.org/0000-0003-2029-5582
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Background: Despite its importance to crop health and plant quality, the structure and diversity of the grape rhizosphere remains poorly described. In this study, the microflora community structures of grapes in northern China were compared using high-throughput sequencing. Results: We found that richness, diversity of bacterial and fungi community networking in the root compartments were significantly influenced by the grape variety. The bacterial linear discriminant analysis showed that Pseudomonas , Rhizobium which considered as potential plant-growth-promoting bacteria were more enriched in Pinot noir, and potential ammonia-oxidizing Nitrosospira was enriched in Gem. The fungal linear discriminant analysis showed that Fusarium was more enriched in Longan, Sporormiella more enriched in Merlot while Gibberella and Pseudallescheria were more enriched in Gem, and Mortierella was more abundant in Cabernet Sauvignon. Conclusions: The 16S rRNA functional prediction indicated that no significance differentiate among the varieties. The results showed that may be we can extinguish the varieties according to these characteristic bacterial and fungal genus.
Keywords
grape rhizosphere, varieties, microflora, linear discriminant analysis, 16S rRNA functional prediction
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A new preprint design is coming!
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This is a preprint, a preliminary version of a manuscript that has not completed peer review at a journal. Research Square does not conduct peer review prior to posting preprints. The posting of a preprint on this server should not be interpreted as an endorsement of its validity or suitability for dissemination as established information or for guiding clinical practice.
Research
Shiwei Zhang
Corresponding Author
ORCiD: https://orcid.org/0000-0003-2029-5582
Badges
Prescreen
This manuscript passed our Prescreen assessment
Complete author information
Appropriate declaration statements
Potential risks to human health
Prescreen
History
CURRENT STATUS: Posted
Version 1
Posted 22 Jan, 2020
No community comments so far
Metrics
Comments: 0
PDF Downloads: ...
HTML Views: ...
Subject Areas
General Microbiology
License:
This work is licensed under a CC BY 4.0 License. Read Full License
Background: Despite its importance to crop health and plant quality, the structure and diversity of the grape rhizosphere remains poorly described. In this study, the microflora community structures of grapes in northern China were compared using high-throughput sequencing. Results: We found that richness, diversity of bacterial and fungi community networking in the root compartments were significantly influenced by the grape variety. The bacterial linear discriminant analysis showed that Pseudomonas , Rhizobium which considered as potential plant-growth-promoting bacteria were more enriched in Pinot noir, and potential ammonia-oxidizing Nitrosospira was enriched in Gem. The fungal linear discriminant analysis showed that Fusarium was more enriched in Longan, Sporormiella more enriched in Merlot while Gibberella and Pseudallescheria were more enriched in Gem, and Mortierella was more abundant in Cabernet Sauvignon. Conclusions: The 16S rRNA functional prediction indicated that no significance differentiate among the varieties. The results showed that may be we can extinguish the varieties according to these characteristic bacterial and fungal genus.
Figure 1
Figure 3
Figure 5
Figure 7
Figure 9
Figure 11
Figure 13
This is a list of supplementary files associated with this preprint. Click to download.
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