1.
Brill E, Malanson KM, Radu RA, Boukharov NV, Wang Z, Chung HY, Lloyd MB, Bok D, Travis
GH, Obin M et al: A novel form of transducin-dependent retinal degeneration: accelerated retinal degeneration
in the absence of rod transducin. Invest Ophthalmol Vis Sci 2007, 48(12):5445-5453.
2.
Rattner A, Sun H, Nathans J: Molecular genetics of human retinal disease. Annu Rev Genet 1999, 33:89-131.
3.
Hartong DT, Berson EL, Dryja TP: Retinitis pigmentosa. Lancet 2006, 368(9549):1795-1809.
4.
Chinchore Y, Mitra A, Dolph PJ: Accumulation of rhodopsin in late endosomes triggers photoreceptor cell degeneration. PLoS Genet 2009, 5(2):e1000377.
5.
Warren R, Molday RS: Regulation of the rod photoreceptor cyclic nucleotide-gated channel. Adv Exp Med Biol 2002, 514:205-223.
6.
Dryja TP, Rucinski DE, Chen SH, Berson EL: Frequency of mutations in the gene encoding the alpha subunit of rod cGMP-phosphodiesterase
in autosomal recessive retinitis pigmentosa. Invest Ophthalmol Vis Sci 1999, 40(8):1859-1865.
7.
Gopalakrishna KN, Boyd K, Artemyev NO: Mechanisms of mutant PDE6 proteins underlying retinal diseases. Cell Signal 2017, 37:74-80.
8.
Stearns G, Evangelista M, Fadool JM, Brockerhoff SE: A mutation in the cone-specific pde6 gene causes rapid cone photoreceptor degeneration
in zebrafish. J Neurosci 2007, 27(50):13866-13874.
9.
Chang B, Grau T, Dangel S, Hurd R, Jurklies B, Sener EC, Andreasson S, Dollfus H,
Baumann B, Bolz S et al: A homologous genetic basis of the murine cpfl1 mutant and human achromatopsia linked
to mutations in the PDE6C gene. Proc Natl Acad Sci U S A 2009, 106(46):19581-19586.
10.
Thiadens AA, den Hollander AI, Roosing S, Nabuurs SB, Zekveld-Vroon RC, Collin RW,
De Baere E, Koenekoop RK, van Schooneveld MJ, Strom TM et al: Homozygosity mapping reveals PDE6C mutations in patients with early-onset cone photoreceptor
disorders. Am J Hum Genet 2009, 85(2):240-247.
11.
Robinson MD, Oshlack A: A scaling normalization method for differential expression analysis of RNA-seq data. Genome Biol 2010, 11(3):R25.
12.
Anders S, Huber W: Differential expression analysis for sequence count data. Genome Biol 2010, 11(10):R106.
13.
Garcia-Campos MA, Espinal-Enriquez J, Hernandez-Lemus E: Pathway Analysis: State of the Art. Front Physiol 2015, 6:383.
14.
Zhang L, Zhang X, Zhang G, Pang CP, Leung YF, Zhang M, Zhong W: Expression profiling of the retina of pde6c, a zebrafish model of retinal degeneration. Scientific data 2017, 4:170182.
15.
Ma Z, Siebert AP, Cheung KH, Lee RJ, Johnson B, Cohen AS, Vingtdeux V, Marambaud P,
Foskett JK: Calcium homeostasis modulator 1 (CALHM1) is the pore-forming subunit of an ion channel
that mediates extracellular Ca2+ regulation of neuronal excitability. Proc Natl Acad Sci U S A 2012, 109(28):E1963-1971.
16.
Nuckels RJ, Ng A, Darland T, Gross JM: The vacuolar-ATPase complex regulates retinoblast proliferation and survival, photoreceptor
morphogenesis, and pigmentation in the zebrafish eye. Invest Ophthalmol Vis Sci 2009, 50(2):893-905.
17.
Cruciat CM, Ohkawara B, Acebron SP, Karaulanov E, Reinhard C, Ingelfinger D, Boutros
M, Niehrs C: Requirement of prorenin receptor and vacuolar H+-ATPase-mediated acidification for
Wnt signaling. Science 2010, 327(5964):459-463.
18.
Chen Y-J, Zhang T-Y, Chen H-Y, Lin S-M, Luo L, Wang D-S: An evaluation of hepatic glucose metabolism at the transcription level for the omnivorous
GIFT tilapia, Oreochromis niloticus during postprandial nutritional status transition
from anabolism to catabolism. Aquaculture 2017, 2017 v.473:pp. 375-382.
19.
Patra KC, Hay N: The pentose phosphate pathway and cancer. Trends Biochem Sci 2014, 39(8):347-354.
20.
Bouzier-Sore AK, Bolanos JP: Uncertainties in pentose-phosphate pathway flux assessment underestimate its contribution
to neuronal glucose consumption: relevance for neurodegeneration and aging. Front Aging Neurosci 2015, 7:89.
21.
Schubert D: Glucose metabolism and Alzheimer's disease. Ageing research reviews 2005, 4(2):240-257.
22.
Le Roith D, Zick Y: Recent advances in our understanding of insulin action and insulin resistance. Diabetes care 2001, 24(3):588-597.
23.
Kahn CR, White MF: The insulin receptor and the molecular mechanism of insulin action. J Clin Invest 1988, 82(4):1151-1156.
24.
Taylor SI, Arioglu E: Genetically defined forms of diabetes in children. J Clin Endocrinol Metab 1999, 84(12):4390-4396.
25.
Maures T, Chan SJ, Xu B, Sun H, Ding J, Duan C: Structural, biochemical, and expression analysis of two distinct insulin-like growth
factor I receptors and their ligands in zebrafish. Endocrinology 2002, 143(5):1858-1871.
26.
Schlueter PJ, Peng G, Westerfield M, Duan C: Insulin-like growth factor signaling regulates zebrafish embryonic growth and development
by promoting cell survival and cell cycle progression. Cell Death Differ 2007, 14(6):1095-1105.
27.
Schlueter PJ, Sang X, Duan C, Wood AW: Insulin-like growth factor receptor 1b is required for zebrafish primordial germ cell
migration and survival. Dev Biol 2007, 305(1):377-387.
28.
Xu H, Lee SJ, Suzuki E, Dugan KD, Stoddard A, Li HS, Chodosh LA, Montell C: A lysosomal tetraspanin associated with retinal degeneration identified via a genome-wide
screen. EMBO J 2004, 23(4):811-822.
29.
Ma B, Xiang Y, An L: Structural bases of physiological functions and roles of the vacuolar H(+)-ATPase. Cell Signal 2011, 23(8):1244-1256.
30.
Hakuno D, Kimura N, Yoshioka M, Fukuda K: Role of angiogenetic factors in cardiac valve homeostasis and disease. J Cardiovasc Transl Res 2011, 4(6):727-740.
31.
Rosenthal R, Heimann H, Agostini H, Martin G, Hansen LL, Strauss O: Ca2+ channels in retinal pigment epithelial cells regulate vascular endothelial growth
factor secretion rates in health and disease. Mol Vis 2007, 13:443-456.
32.
Dong Y, Fischer R, Naude PJ, Maier O, Nyakas C, Duffey M, Van der Zee EA, Dekens D,
Douwenga W, Herrmann A et al: Essential protective role of tumor necrosis factor receptor 2 in neurodegeneration. Proc Natl Acad Sci U S A 2016, 113(43):12304-12309.
33.
Oates AC, Pratt SJ, Vail B, Yan Y, Ho RK, Johnson SL, Postlethwait JH, Zon LI: The zebrafish klf gene family. Blood 2001, 98(6):1792-1801.
34.
Nicolaou A, Northoff BH, Sass K, Ernst J, Kohlmaier A, Krohn K, Wolfrum C, Teupser
D, Holdt LM: Quantitative trait locus mapping in mice identifies phospholipase Pla2g12a as novel
atherosclerosis modifier. Atherosclerosis 2017, 265:197-206.
35.
Deblandre GA, Lai EC, Kintner C: Xenopus neuralized is a ubiquitin ligase that interacts with XDelta1 and regulates
Notch signaling. Developmental cell 2001, 1(6):795-806.
36.
Rehman AO, Wang CY: Notch signaling in the regulation of tumor angiogenesis. Trends Cell Biol 2006, 16(6):293-300.
37.
Ding Y, Kantarci A, Badwey JA, Hasturk H, Malabanan A, Van Dyke TE: Phosphorylation of pleckstrin increases proinflammatory cytokine secretion by mononuclear
phagocytes in diabetes mellitus. Journal of immunology (Baltimore, Md : 1950) 2007, 179(1):647-654.
38.
Werdich XQ, Penn JS: Specific involvement of SRC family kinase activation in the pathogenesis of retinal
neovascularization. Invest Ophthalmol Vis Sci 2006, 47(11):5047-5056.
39.
Wagner L, Oliyarnyk O, Gartner W, Nowotny P, Groeger M, Kaserer K, Waldhausl W, Pasternack
MS: Cloning and expression of secretagogin, a novel neuroendocrine- and pancreatic islet
of Langerhans-specific Ca2+-binding protein. J Biol Chem 2000, 275(32):24740-24751.
40.
Deangelis MM, Ji F, Adams S, Morrison MA, Harring AJ, Sweeney MO, Capone A, Jr., Miller
JW, Dryja TP, Ott J et al: Alleles in the HtrA serine peptidase 1 gene alter the risk of neovascular age-related
macular degeneration. Ophthalmology 2008, 115(7):1209-1215 e1207.
41.
Kohl S, Giddings I, Besch D, Apfelstedt-Sylla E, Zrenner E, Wissinger B: The role of the peripherin/RDS gene in retinal dystrophies. Acta Anat (Basel) 1998, 162(2-3):75-84.
42.
Monnier PP, D'Onofrio PM, Magharious M, Hollander AC, Tassew N, Szydlowska K, Tymianski
M, Koeberle PD: Involvement of caspase-6 and caspase-8 in neuronal apoptosis and the regenerative
failure of injured retinal ganglion cells. J Neurosci 2011, 31(29):10494-10505.
43.
Fang L, Barber AJ, Shenberger JS: Regulation of fibroblast growth factor 2 expression in oxygen-induced retinopathy. Invest Ophthalmol Vis Sci 2014, 56(1):207-215.
44.
Ratnayaka JA, Serpell LC, Lotery AJ: Dementia of the eye: the role of amyloid beta in retinal degeneration. Eye (Lond) 2015, 29(8):1013-1026.
45.
Bolger AM, Lohse M, Usadel B: Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 2014, 30(15):2114-2120.
46.
Langmead B, Salzberg SL: Fast gapped-read alignment with Bowtie 2. Nat Methods 2012, 9(4):357-359.
47.
Wu Y, Yang H, Liu H, Yang Z, Zhu M, Pan X, Huang T, Zou K, Bai J, Ma Y et al: [Research of herb components on scavenging harmful components and reducing cytotoxicity
of cigarette smoke]. Zhongguo Zhong yao za zhi = Zhongguo zhongyao zazhi = China journal of Chinese materia
medica 2011, 36(22):3184-3188.
48.
Robinson MD, McCarthy DJ, Smyth GK: edgeR: a Bioconductor package for differential expression analysis of digital gene
expression data. Bioinformatics 2010, 26(1):139-140.
49.
Huang DW, Sherman BT, Tan Q, Kir J, Liu D, Bryant D, Guo Y, Stephens R, Baseler MW,
Lane HC et al: DAVID Bioinformatics Resources: expanded annotation database and novel algorithms
to better extract biology from large gene lists. Nucleic Acids Res 2007, 35(Web Server issue):W169-175.
50.
Saddala MS, Lennikov A, Grab DJ, Liu GS, Tang S, Huang H: Proteomics reveals ablation of PlGF increases antioxidant and neuroprotective proteins
in the diabetic mouse retina. Scientific reports 2018, 8(1):16728.
51.
Wang Z, Gerstein M, Snyder M: RNA-Seq: a revolutionary tool for transcriptomics. Nat Rev Genet 2009, 10(1):57-63.