High Mycoplasma pneumoniae Loads and Persistent Long-term Mycoplasma pneumoniae Infection in Lower Airway Associated with Severity of Pediatric Mycoplasma pneumoniae Pneumonia

DOI: https://doi.org/10.21203/rs.2.10258/v1


Background An increased number of refractory mycoplasma pneumoniae (MP) pneumonia (MPP) cases have been reported. However the duration of MP infection in lower airway and the course of anti-MP treatment remains unclear. Methods We retrospectively reviewed the medical records of 94 MPP children. Patients were classified into two groups. The long-term group (Group LT) was defined as bronchoalveolar lavage fluid (BALF) remained MP-positive by PCR after 30 days of the disease course. The non-long-term group (Group NLT) was defined as BALF became MP-negative by PCR within 30 days of disease and patients who only needed one bronchoscopy lavage therapy. MP loads, clinical outcomes were analyzed along with other clinical measurements. Results The average levels of inflammatory markers such as C reactive protein and lactate dehydrogenase in Group LT were significantly higher than those in Group NLT. Airway and lung damage in Group LT were more severe than Group NLT. 28 patients developed necrotizing pneumonia and 8 patients developed pulmonary embolism in Group LT. Mean maximum MP loads in BALF were 107.46±0.93 and 104.86±0.93 in Groups LT and NLT, respectively. There was persistent MP infection in Group LT, even lasted for 120 days. One severe MPP patient in Group LT had MP-associated bloodstream infection. After 3 months of follow-up, chest imaging revealed incomplete absorption of pulmonary consolidation in 33 patients of Group LT [including 13 airway obliterans (AO) patients] and in 7 patients of Group NLT (including 2 AO patients). Conclusion MP loads of BALF were associated with the subsequent duration of MP infection in lower airway. High MP bacterial loads and persistent long-term MP infection in lower airway were associated with severity of pediatric MPP.


An increased number of refractory, severe, and even fatal Mycoplasma pneumoniae (MP) pneumonia (MPP) cases have been reported in recent years[1-3]. Although the patient’s body temperature can return to normal after treatment, airway and pulmonary lesions are still severe in some refractory MPP (RMPP) patients. Furthermore, some RMPP patients have sequelae, mainly atelectasis, due to airway obliterans (AO)[4].

Cell-mediated immunity and cytokine responses against the pathogens, MP resistance to macrolides and airway hypersecretion have been reported in MPP[5, 6]. However some patients received timely treatment with sensitive antibiotics such as moxifloxacin, corticosteroid, and bronchoscopy lavage therapy (BLT), AO was still unavoidable. We observed airway hypersecretion and subsequent airway damage was severe in some children with RMPP, who required several treatments with BLT. Therefore, many factors of RMPP remain unclear, such as why airway damage persists, how long it takes to clear MP, and the course of anti-MP treatment. Elucidating these issues is important to help guide treatment strategies and further understand the underlying mechanisms of pediatric RMPP.

Here, we retrospectively analyzed MPloads in 94 MPP patients, including 90 RMPP patients. Fluorescence quantitative PCR (FQ-PCR) for MP gene detection was applied in all patients. Our studies suggested that MP could persist in the lower airway for up to 4 months, which is consistent with the severity of airway and pulmonary damage. In addition, MP culture was performed in 15 bronchoalveolar lavage fluid (BALF) samples after 30 days of the disease course; 12 of 15 samples were positive, suggesting active MP infection. Moreover, MP was detected by FQ-PCR in the peripheral blood of one patient with severe MPP, which suggested a rare case of MP-associated bloodstream infection. To our knowledge, this is the first report of persistent MP infection and difficult MP clearance in the lower airway of human.

Materials And Methods

Study Population

We retrospectively reviewed the medical records of 94 previously healthy MPP patients who were admitted in the Department of Respiratory Medicine II at Beijing Children’s Hospital, National Center for Children’s Health, between January and December 2017. The study was approved by the Ethics Committee of Beijing Children’s Hospital (No. 2017-23), and informed written consent was obtained from guardian of all the patients at the beginning of admission to our department. Patients with respiratory virus including adenovirus infection were excluded from current study.

Patients were classified into two groups. The long-term group (Group LT) was defined as BALF remained MP-positive by FQ-PCR after 30 days of the disease course. The non-long-term group (Group NLT) was defined as BALF became MP-negative by PCR within 30 days of disease and patients who only needed one BLT assessed by two clinicians.

The clinical and demographic data were collected and recorded for each patient. Variables included age, gender, disease course before first admission to our department, and inflammatory markers [the maximal white blood cells (WBC), C reactive protein (CRP, normal range<8mg/L), lactate dehydrogenase (LDH)] within 15 days of disease course. Additionally the MP loads, findings of bronchoscopy and chest imaging, and treatment with anti-MP antibiotics and corticosteroid were recorded.


RMPP was diagnosed according to the following criteria: (1) patients with MPP had persistent fever and deterioration of clinical and radiological findings after 7 days of disease course; (2) patients were treated with macrolides for 7 days or more e[6, 7]{}.

The diagnosis of AO was based on the obliteration of the lumen of bronchi, bronchial branches, bronchial segments, or bronchial subsegments under bronchoscopy (Fig. 1A) [6]. The imaging findings of AO were atelectasis.

Fiberoptic Bronchoscopy and BALF Collection

Fiberoptic bronchoscopy and BALF Collection were performed as previously reported[6].


FQ PCR was performed as previously reported [8]. The standard curves for each MP Quantitative was determined by analyzing serial 10-fold dilutions of stand red MP DNA (M129 strain, 1 copy/μl to 108copies/μl). Each DNA of specimens and stand red was assayed in triplicate.

MP Culture of BALF Samples

BALF was cultured in Mycoplasma selective liquid media (OXOID) at 37°C. When the color of the media changed from red to yellow, approximately 0.1 ml of the suspension was transferred onto agar to subculture and purify the bacteria using the filtration-cloning technique for MP clinical isolates.

Statistical Analyses

SPSS version 17.0 was used for statistical analyses. All statistical hypothesis tests were 2-sided, and P values < 0.05 were considered statistically significant.


Study Population

A total of 94 MPP patients (age range: 3 years 4 months–13 years 7 months) were enrolled in this study. The cohort was 50% male (n=47). All patients in Group LT and 40 patients in Group NLT were finally diagnosed with RMPP. There was no significant difference in gender and age between Groups LT and NLT (P>0.05) (Table1).

Clinical characteristics

The average duration of disease before hospitalization was 17.40±13.33 days and 9.27±3.79 days in Groups LT and NLT, respectively (P<0.001).

In Group LT, most patients resided from all over the country and 12 patients had type I respiratory failure, which suggested patients in this group were severe and difficult to treat. Mean WBC count, CRP level, and LDH concentration were 11.85±4.61×109/L, 104.96±54.20 mg/L, and 681.00±298.24 IU/L, respectively.

In Group NLT, mean WBC count, CRP level, and LDH concentration were 8.47±2.48×109/L, 30.32±20.64 mg/L, and 330.11±81.37 IU/L, respectively.

A clear statistical difference was observed in inflammatory markers (WBC, CRP, LDH) between the two groups (P<0.001) (Table 1).

Bronchoscopy Findings

In Group LT, bronchoscopy carried out at the early stage of disease revealed mucus plug (Fig. 1B) and airway mucous necrosis (Fig.2) in 41 (including plastic bronchitis in 6 patients) and 29 patients, respectively. In the late stage of disease, 13 patients had stenosis and 13 patients had AO.

In Group NLT, three patients had a mucus plug and three patients had mucous necrosis in the early stage of disease. In the late stage of disease, bronchoscopy revealed stenosis and AO in three and two patients, respectively.

A clear statistical difference was observed in airway damage between the two groups (P<0.05) (table 1).

Chest Imaging Findings

In Group LT, chest imaging at the early stage of disease revealed consolidation with high density (2/3-1 pulmonary lobe in 4 patients; ≥1 lobe in 46 patients) in 50 patients and pleural effusion in 34 patients. Additionally, chest imaging revealed pulmonary embolism in 8 patients between 11 and 29 days of disease and necrotizing pneumonia (NP) in 28 patients between 14 and 60 days of disease (Fig. 3).

In Group NLT, chest imaging revealed consolidation with high density (<1/2 pulmonary lobe in 4 patients, 1/2–2/3 lobe in 24 patients, and 2/3–1 lobe in 11 patients) in 39 patients and bronchiolitis in 5 patients. Only two patients also had a small amount of pleural effusion.

A clear statistical difference was observed in lung damage between the two groups (P<0.05) (Table 1).

MP Loads by PCR

MP Loads in Paired Throat Swab and BALF Collected at the Same Time Point

In Group LT, throat swabs were performed in 20 patients 22–45 days after disease; 15 patients were MP-positive (including one patient with 105 copies/mL in 45 days) and 5 patients were MP-negative. Additionally, MP loads in throat swabs were lower than those in BALF. All BALF samples were MP-positive.

In Group NLT, throat swabs were performed in 10 RMPP patients 18–22 days after disease; 3 patients were MP-positive and 7 patients were MP-negative. Five BALF samples were MP-positive.

These results suggest that patients in Group LT had long-term persistent upper airway infection and MP was cleared from the upper airway before the lower airway (Table 2).

Maximum MP Loads in BALF

MP loads in BALF were classified into three groups as follows: high bacterial loads (≥107 copies/mL), moderate bacterial loads (106 copies/mL), and low bacterial loads (<106 copies/mL).

In Group LT, high, moderate, and low MP loads were found in 44 (88%, 44/50), 4 (8%, 4/50), and 2 (4%, 2/50) patients, respectively. In Group NLT, high, moderate, and low MP loads were found in 2 (5%, 2/44), 5 (11%, 5/44), and 37 (84%, 37/44) patients, respectively. Mean MP loads in BALF were 107.46±0.93 and 104.86±0.93 in Groups LT and NLT, respectively (P<0.001), which suggest MP loads in BALF are associated with the duration of MP infection.

Duration of MP Infection in BALF

In Group LT, MP DNA gradually declined over time in most patients. However, in some patients, MP copy numbers initially increased and then declined. MP was detected by PCR within 31–40 days, 41–50 days, 51–60 days, and 61–90 days after disease onset in 17, 19, 9, and 4 patients, respectively. Cases 1–4 (2 NP patients and 2 AO patients) had detectable MP loads 61–90 days after disease onset. Moreover, 120 days after disease onset, MP was detected by PCR in an NP patient (Case 5, 5.98×103 copies/mL).

In Group NLT, 17 patients received more than two treatments of BLT and became MP-negative by PCR within 30 days of the disease. The remaining 27 patients received BLT once and were MP-positive by PCR.

These results demonstrate persistent long-term infection in the lower airway of patients in Group LT.

MP Loads in Peripheral Blood

MP PCR was performed in 20 RMPP patients in Group LT within 7 days of disease. MP was detected in only one patient with severe RMPP (Case 6, 3.34×103 copies/mL), which suggested a rare MP-associated bloodstream infection. This patient had type I respiratory failure and a pulmonary embolism.

MP Culture in Long-term MP Infection

In Group LT, MP culture was performed in 15 patients whose MP loads were >105 copies/mL within 31-60 days after disease onset. Twelve of 15 patients were found to be MP-positive.

Treatment and Clinical Outcomes

All patients were treated with macrolides and BLT and followed up for at least 3 months. Four non-RMPP patients in Group NLT were not treated by glucocorticoid.

In Group LT, moxifloxacin and doxycycline were also added to the treatment course in 14 patients and 2 patients, respectively. Azithromycin, which has anti-inflammatory effects, was administered for 3–6 months in 23 patients. Twenty-one patients whose CRP levels were >100 mg/L received high-dose methylprednisolone therapy (10–30 mg/kg/d for 3 days); after 3 months, chest imaging findings were normal in only 7 patients. These seven patients had started corticosteroid treatment 7–9 days into the disease course. In Group LT, chest imaging after 3 months of treatment revealed incomplete absorption of pulmonary lesions in 33 patients, including 13 AO patients.

In Group NLT, chest imaging after 3 months of treatment revealed incomplete absorption of pulmonary consolidation in seven patients, including two AO patients.

No obvious side effects were observed in any patients. Furthermore, there were no deaths in our study.

Taken together, these results indicate MP infection was difficult to clear, and absorption of lung lesions was very slow, especially in Group LT.


Pediatric MPP is a significant public health problem. The clinical severity of MP infection is associated with MP loads in oropharyngeal secretions[9, 10]. Nilsson et al. observed that the majority of patients with MP-positive throat swabs by PCR had persistent, sometimes long-term, upper airway infections (median time of carriage of MP DNA was 7 weeks after disease onset) [11]. However, to our knowledge, there is no report on the duration of MP infection in the lower airway of human. BALF is the most reliable specimen for diagnosing and assessing lower respiratory tract infection. In our study, all patients received BLT and some patients received BLT several times. We found MP was cleared in the upper airway earlier than the lower airway, and MP loads in BALF in the early stage of disease were associated with the subsequent duration of MP infection in the lower airway. Additionally, inflammatory markers (WBC, CRP, and LDH), airway and lung injury, and pulmonary complications were highly associated with MP loads and persistent MP infection in BALF. Strikingly, in Group LT, all patients had persistent infection even for up to 120 days, and some patients still had high MP loads 50 days after disease onset. Given that PCR cannot distinguish live bacteria from dead bacteria, we also performed MP culture for 15 patients whose MP loads were >105 copies/mL; 12 of these patients were MP-positive, which suggested persistent long-term MP infection in the lower respiratory tract.

In our study, high MP loads and prolonged infection were mainly accompanied by airway damage, such as epithelial desquamation, necrosis, and AO, and pulmonary damage, such as consolidation and necrosis (sometimes including recurrent low or moderate fever in few patients). These findings suggested persistent MP activation and chronic respiratory infection rather than a state of chronic MP colonization. A previous study reported that adequate antibiotic treatment does not shorten the period of persistence [11], which was confirmed in the present study.

It has been reported that MP clearance was difficult in animal experiments or in vitro. Airway hypersecretion, epithelial desquamation, and remodeling cause AO, which compromises further clearance in vitro[12], which was consistent with our present study. Other studies have shown that MP is resistant to killing by neutrophils, suggesting that the bacterium might circumvent bactericidal activity of neutrophil extracellular traps[13]. B cells and MP-specific antibodies are also crucial for its clearance in the lungs of mice[14]. Interleukin (IL)-1 plays an important role in recruiting and activating lung innate immune cells that are critical for MP clearance[15]. MP respiratory tract infection in IL-12 knockout mice results in improved bacterial clearance and reduced pulmonary inflammation such as neutrophilic alveolar infiltrate and airway obstruction[16]. Intranasal IL-12 therapy inhibits MP clearance and sustains airway obstruction in murine pneumonia[17]. In addition, host genetic background was also found to be important for MP disease severity [18, 19]. However the underlying mechanisms of persistence remain unclear.

Macrolide-resistant (MR)-MP strains are emerging and becoming increasingly common, especially in Eastern Asia, and have been reported at a rate of >90% in Beijing from 2008 to 2012[20]. Macrolides are still used as first-line agents at high frequencies in countries with a high burden of MR-MP strains, such as China and Japan, mainly because of their low minimum inhibitory concentrations against the bacteria, anti-inflammatory effect and low toxicity in young children. Yang et al. reported that timely azithromycin treatment may be ineffective in treating MR-MP pneumonia in vivo, but we are unable to withhold antibiotic treatment to confirm this hypothesis due to ethical issues. However, the early use of azithromycin aids in reducing extrapulmonary complications in MPP[21]. Yoon et al. found macrolide treatment for macrolide-susceptible MPP did not contribute to significant clinical improvement compared to no antimicrobial treatment[22]. Kutty et al. reported that among MP PCR-positive children, length of stay was similar between children who did and did not receive an antibiotic with MP activity[23].

In countries in which the prevalence of MR-MP strains is high, the replacement of macrolides as the first-line treatment with tetracyclines or fluoroquinolones was considered. To date, no tetracycline or fluoroquinolone resistance has been reported in MP clinical isolates. Both minocycline and tosufloxacin have shown good in vitro activities against MR-MP. However, the duration of fever following commencement of treatment with tosufloxacin in patients infected with MR-MP was not significantly different from the duration of fever following commencement of treatment with macrolides[24]. Compared to tosufloxacin, minocycline has a relatively high blood concentration and a long half-life[25] and efficiently penetrates into lung tissues and bronchial mucus[26] [27]. None of our patients received minocycline therapy. Although some of our patients received timely treatment with azithromycin, moxifloxacin, or doxycycline singly or in combination even for several courses, MP remained difficult to clear. This might suggest that antibiotics with potent intracellular activity are required for resolution of MP infection.

A previous study showed that 3-day methylprednisolone pulse therapy which was initiated 7–15 days after disease onset could be applied for RMPP treatment despite appropriate antibiotic therapy and appeared to be efficacious in 12 children[28]. However methylprednisolone pulse therapy was given 9 days after disease onset in our 14 patients in Group LT, chest imaging findings remained abnormal after 3 months of treatment. Therefore, the underlying pathogenesis of RMPP is still unclear.

Compared with C57BL/6 mice, BALB/c mice exhibited host-dependent MP infection-related airway obstruction associated with chemokine[19], which suggested some pediatric RMPP patients were highly reactive to MP. Community-acquired respiratory distress syndrome toxin induces exfoliation of mucosal cells and ciliostasis[29]. Airway epithelial remodeling during persistent MP infection may involve epithelial-to-mesenchymal transition in a human airway epithelium model[12]. Therefore, high MP loads and epithelial desquamation, subsequent persistent MP infection, epithelial remodeling, and AO can lead to a vicious cycle of MP disease.

We found that MP may survive for a long time, especially in RMPP patients who suffer from MP associated NP, AO, or pulmonary embolism. Furthermore, although MP-associated bloodstream infection is rare, it can occur.

Our study has several limitations. The numbers of blood samples and throat swabs were small. The reason for the small number of blood samples is that the MP-negative rate is very high, in RMPP, thus clinicians do not often request blood samples for MP detection. The number of children treated with moxifloxacin and doxycycline is small. Additionally, in some RMPP patients of Group LT, we did not store the last collected BALF sample. Therefore, the actual duration of persistence is likely underestimated.

Taken together, our study confirms persistent long-term MP infection and difficult MP clearance in the lower airway of RMPP patients. Additionally, patients with MP loads ≥107 copies/mL in BALF are perhaps at high risk of RMPP and may be more likely to develop sequelae. Lastly, patients who have high levels of inflammatory markers, such as CRP and LDH, and high-density consolidation (especially more than one pulmonary lobe) on imaging may also have higher MP loads and subsequent persistent MP airway infection that is accompanied by NP, AO, or pulmonary embolism.


AO: airway obliterans; BALF: bronchoalveolar lavage fluid; BLT: bronchoscopy lavage therapy; CRP: C reactive protein; LDH: lactate dehydrogenase; LT: long-term; MP: Mycoplasma pneumoniae; MPP: Mycoplasma pneumoniae pneumonia; NLT: non-long-term; RMPP: Refractory MPP; WBC: white blood cells



We thank Christina Croney, PhD, from Liwen Bianji, Edanz Group China (www.liwenbianji.cn/ac), for editing a draft of this manuscript.


This work was supported by Beijing Municipal and Commission Health and Family Planning (Grant No. 2015-3-076).

Availability of data and materials

The datasets generated during and/or analysed during the current study are available from the corresponding author on reasonable request.

Authors’ contributions

J-R L and FZ wrote the main manuscript text; JL, HX, HL, XT and HY collected and analyzed clinical data; J-R L, FZ and SZ are to take responsibility for study design. All authors reviewed the manuscript. All authors read and approved the final manuscript.

Ethics approval and consent to participate

All procedures performed in studies involving human participants were in accordance with the ethical standards of the Ethics Committee of Beijing Children’s Hospital (No. 2017-23) and with the 1964 Helsinki declaration and its later amendments or comparable ethical standards. Participant consent was written by the guardian of all the patients and informed consent forms were archived.

Consent for publication

Not applicable.

Competing interests

The authors declare that they have no competing interests.


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Table 1 Demographic and clinical features, inflammatory markers, and the findings of bronchoscopy and chest imaging in all patients

Group LT(n=50)

Group NLT(n=44)

P Value





Age (years)




Disease course before first admission (days)




Respiratory failure (n/%)




WBC (×109/L)




CRP (mg/L)








Bronchoscopy findings

Early stage

Mucous plug (n/%)




Mucus necrosis (n/%)




Late stage

Stenosis (n/%)




AO (n/%)




Chest imaging findings

Consolidation (>one pulmonary lobe) (n/%)




Pleural effusion (n/%)




Pulmonary embolism (n/%)




NP (n/%)




Short names: WBC = white blood cells, CRP = C reactive protien, LDH = lactate dehydrogenase, AO = airway obliterans, NP= necrotizing pneumonia.

Table 2 Bacterial MP loads and duration of MP infection

Group LT (n=50)

Group NLT (n=44)

Positive MP loads in throat swab (n/disease course/ copies/ml)



Negative MP loads in throat swab (n/disease course)



Highest MP loads in BALF

High load (n/%/copies/ml)

44/88%/ 107-8


Middle load (n/%/copies/ml)



Low load (n/%/copies/ml)



Highest MP loads in BALF (copies/mL)



Duration of MP infection in BALF

Within 31-40 days (n/copies/ml)

17 /102-7


Within 41-50 days (n/copies/ml)



Within 51-60 days (n/copies/ml)



Within 61-90 days (n/copies/ml)

Cases 1 and 2

Cases 3 and 4







120 days (n/copies/ml)

Case 5





Duration of negative MP in BALF (n/disease course)



Short names: MP = Mycoplasma pneumoniae, BALF= bronchoalveolar lavage fluid