Bird BH, Ksiazek TG, Nichol ST, Maclachlan NJ. Rift Valley fever virus. J Am Vet Med Assoc. 2009 ; 234 :883-93. doi: 10.2460/javma.234.7.883.
Cêtre-Sossah C, Zeller H, Grandadam M, Caro V, Pettinelli F, Bouloy M, Cardinale E, Albina E. Genome analysis of Rift Valley fever virus, Mayotte. Emerg Infect Dis. 2012 ;18: 969-971. doi: 10.3201/eid1806.110994.
Roger M, Beral M, Licciardi S, Soulé M, Faharoudine A, Foray C, Olive MM, Maquart M, Soulaimane A, Madi Kassim A, Cêtre-Sossah C, Cardinale E. Evidence for circulation of the rift valley fever virus among livestock in the union of Comoros. PLoS Negl Trop Dis. 2014; 8(7):e3045. doi: 10.1371/journal.pntd.0003045. eCollection 2014.
Métras R, Cavalerie L, Dommergues L, Mérot P, Edmunds WJ, Keeling MJ, et al. The Epidemiology of Rift Valley Fever in Mayotte: Insights and Perspectives from 11 Years of Data. PLoS Negl Trop Dis. 2016 ;10(6):e0004783.
Guzman MG, Harris E. Dengue. Lancet. 2015; 385: 453-65. doi: 10.1016/S0140-6736(14)60572-9.
Promed.2018. Archive Number: 20180704.5886934. Kenya. http://www.promedmail.org/post/20180704.5886934.
Promed.2019. Archive Number 20190222.6331808. Mayotte. http://www.promedmail.org/post/20190222.6331808
Lustig Y, Wolf D, Halutz O, Schwartz E. An outbreak of dengue virus (DENV) type 2 Cosmopolitan genotype in Israeli travellers returning from the Seychelles. Euro Surveill. 2017;22:26.30563.
Pascalis H, Turpin J, Roche M, Krejbich P, Gadea G, Nten CA, et al. The epidemic of dengue virus type-2 cosmopolitan genotype on Reunion Island relates to its active circulation in the Southwestern Indian Ocean neighboring islands. Heliyon. 2019 ; 10;5(4):e01455.
Bird BH, Bawiec DA, Ksiazek TG, Shoemaker TR, Nichol ST. Highly sensitive and broadly reactive quantitative reverse transcription-PCR assay for high-throughput detection of Rift Valley fever virus. J Clin Microbiol. 2007; 45: 3506-3513. doi: 10.1128/JCM.00936-07. pmid: 17804663.
Wilson WC, Romito M, Jasperson DC, Weingartl H, Binepal YS, Maluleke MR, et al. Development of a Rift Valley fever real-time RT-PCR assay that can detect all three genome segments. J Virol Methods. 2013;193:426-31.
LaBeaud AD, Sutherland LJ, Muiruri S, Muchiri EM, Gray LR, Zimmerman PA, et al. Arbovirus prevalence in mosquitoes, Kenya. Emerg Infect Dis. 2011;17:233-41.
Mwaengo D, Lorenzo G, Iglesias J, Warigia M, Sang R, Bishop RP, Brun A. Detection and identification of Rift Valley fever virus in mosquito vectors by quantitative real-time PCR.Virus Res. 2012;169:137-43.
Dos Reis IC, Gibson G, Ayllón T, de Medeiros Tavares A, de Araújo JMG, et al. Entomo-virological surveillance strategy for dengue, Zika and chikungunya arboviruses in field-caught Aedes mosquitoes in an endemic urban area of the Northeast of Brazil. Acta Trop. 2019; 197:105061.
Tsai JJ, Liu WL, Lin PC, Huang BY, Tsai CY, Chou PH, et al. An RT-PCR panel for rapid serotyping of dengue virus serotypes 1 to 4 in human serum and mosquito on a field-deployable PCR system. PLoS One. 2019;14(3):e0214328.
Martin E, Borucki MK, Thissen J, Garcia-Luna S, Hwang M, Wise de Valdez M, et al. Adaptation of a microbial detection array as a monitoring tool revealed the presence of mosquito-borne viruses and insect-specific viruses in field-collected mosquitoes. Appl Environ Microbiol. 2019;01202-19.
Fukutani KF, Kasprzykowski JI, Paschoal AR, Gomes MS, Barral A, de Oliveira CI, et al. Meta-Analysis of Aedes aegypti expression datasets: Comparing virus infection and blood-fed transcriptomes to identify markers of virus presence. Front Bioeng Biotechnol. 2018a;5:84.
Fukutani E, Rodrigues M, Kasprzykowski JI, et al. Follow up of a robust meta-signature to identify Zika virus infection in Aedes aegypti: another brick in the wall. Memórias do Instituto Oswaldo Cruz. 2018b;113:e180053.
Reed LJ, Muench H. A simple method of estimating 50% end points. Am J Hyg. 1938; 27, 493–497.
Wikan N, Kuadkitkan A, Smith DR. The Aedes aegypti cell line CCL-125 is dengue virus permissive. Journal of Virological Methods.2009;157:227–230.
Giry C, Roquebert B, Li-Pat-Yuen G, Gasque P, Jaffar-Bandjee MC. Simultaneous detection of chikungunya virus, dengue virus and human pathogenic Leptospira genomes using a multiplex TaqMan® assay. BMC Microbiol. 2017;17: 105. doi: 10.1186/s12866-017-1019-1.
Wingett SW, Andrews S. (2018). FastQ Screen: A tool for multi-genome mapping and quality control. F1000Res. 2018. 7:1338.
Kim D, Pertea G, Trapnell C, Pimentel H, Kelley R, Salzberg SL.TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome biology, 2013;14, R36.
Langmead B, Salzberg SL. Fast gapped-read alignment with Bowtie 2. Nature methods. 2012;9:357-359.
Anders S, Pyl PT, Huber W. HTSeq — A Python framework to work with high-throughput sequencing data. Bioinformatics 2015; 31:166-169.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, et al. Bioconductor: open software development for computational biology and bioinformatics. Genome biology, 2004;5(10),R80.
Robinson MD, McCarthy DJ, Smyth GK. edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.Bioinformatics.2010;26:139-140.
Love MI, Huber W and Anders S. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.Genome Biology. 2014;15:550.
29. Matthews BJ, Dudchenko O, Kingan SB, Koren S, Antoshechkin I, Crawfrod JE, et al. Improved reference genome of Aedes aegypti informs arbovirus vector control. Nature. 2018;563:501-507.
Dong S, Balaraman V, Kantor AM, Lin J, Grant DG, Held NL, et al. Chikungunya virus dissemination from the midgut of Aedes aegypti is associated with temporal basal lamina degradation during bloodmealdigestion. PLoS Negl Trop Dis. 2017; 11(9):e0005976
Waterhouse RM, Kriventseva EV, Meister S, Xi Z, Alvarez KS, Bartholomay LC, et al. Evolutionary dynamics of immune-related genes and pathways in disease-vector mosquitoes. Science. 2007; 316:1738–1743.
Bonizzoni M, Britton M, Marinotti O, Dunn WA, Fass J, James AA1. Probing functional polymorphisms in the dengue vector, Aedes aegypti. BMC Genomics. 2013;14-739.
Rawlings RD, Barrett AJ. Evolutionary families of peptidases. Biochem J. 1993; 290:205–218.
Jiang H, Kanost MR. The clip-domain family of serine proteinases in arthropods. Insect Biochem Mol Biol. 2000;30:95–105.
Cao X, He Y, Hu Y, Zhang X, Wang Y, Zou Z, et al. Sequence conservation, phylogenetic relationships, and expression profiles of nondigestive serine proteases and serine protease homologs in Manduca sexta. Insect biochemistry and molecular biology. 2015; 62:51-63.
Zhao P, Wang GHH, Dong ZMM, Duan J, Xu PZZ, Cheng TCC, et al. Genomewide identification and expression analysis of serine proteases and homologs in the silkworm Bombyx mori. BMC genomics. 2010; 11:405.
Zou Z, Lopez DL, Kanost MR, Evans JD, Jiang H. Comparative analysis of serine protease-related genes in the honey bee genome: possible involvement in embryonic development and innate immunity. Insect Mol Biol. 2006; 15:603–614.
Cao X, Gulati M, Jiang H .Serine protease-related proteins in the malaria mosquito, Anopheles gambiae. Insect Biochem Mol Biol. 2017; 88 :48-62.
Kanost MR, Jiang H. Clip-domain serine proteases as immune factors in insect hemolymph. Curr Opin Insect Sci. 2015;11:47-55.
Gorman MJ, Paskewitz SM. Serine proteases as mediators of mosquito immune responses. Insect Biochem Mol Biol. 2001;31:257-62.
Wessling-Resnick M. Crossing the Iron Gate: Why and How Transferrin Receptors Mediate Viral Entry. Annual Review of Nutrition. 2018;38:431-458.
Tchankouo-Nguetcheu S, Khun H, Pincet L, Roux P, Bahut M, Huerre M, et al. Differential protein modulation in midguts of Aedes aegypti infected with chikungunya and dengue 2 viruses. PLoS One. 2010;5.
Kuadkitkan A, Wikan N, Fongsaran C, Smith DR. Identification and characterization of prohibitin as a receptor protein mediating DENV-2 entry into insect cells. Virology 2010;406:149–161.
Jupatanakul N, Sim S, Dimopoulos G. Aedes aegypti ML and Niemann-Pick type C family members are agonists of dengue virus infection. Dev Comp Immunol. 2014;43:1-9.
Cheng G, Liu Y, Wang P, Xiao X. Mosquito defense strategies against viral infection. Trends Parasitol. 2016 ;32 :177-186.