Cell culture
The human pancreatic cancer cell line PANC-1 (ATCC CRL-1469) was obtained from the Bioresource Collection and Research Center (Hsinchu, Taiwan). We cultured PANC-1 cells in Dulbecco’s Modified Eagle Medium (DMEM, Gibco®, Thermo Fisher Scientific, Waltham, MA, USA) supplemented with 10% fetal bovine serum (FBS) and 1% antibiotic pen-strep-ampho. The human monocyte cell line THP-1 (ATCC TIB-202) was also obtained from the Bioresource Collection and Research Center. We cultured the THP-1 cells in RPMI supplemented with 10% FBS and 1% antibiotic pen-strep-ampho.
Preparation of macrophage-conditioned media
In order to collect the macrophage CMs, we harvested 6 × 106 THP-1 cells into 10 mL DMEM with 0.32 mM phorbol 12-myristate 13-acetate (PMA, Sigma-Aldrich, St. Louis, MO, USA). After treatment with PMA for 24 h, most of the monocytes attached onto the bottom of the culture dish and were considered to be differentiated into M0 macrophages [32, 33] . Further incubating the M0 macrophages with 10 pg/mL LPS + 20 ng/mL IFN-γ for 24 h or 20 ng/mL IL-4 + 20 ng/mL IL-13 for 72 h, we polarized the M0 macrophages into M1 and M2 macrophages, respectively [33] . The expression levels of relevant markers of M1 and M2 macrophages are shown in Fig. S1 in the Supplementary Information. We replaced the culture medium of each macrophage mentioned above with fresh DMEM, and conducted another 24 h of cultivation. The media were then collected and used as the macrophage CMs in the experiments.
TNT quantification
We seeded PANC-1 cells at 1 × 105 cells/mL in a µ-Dish (35 mm, high Grid-500, ibidi GmbH, Gräfelfing, Germany) under normal cultivation conditions (5% CO2 at 37 °C) overnight. Then the cells were cultured in the macrophage-CM for another 48 h. The cells were washed with phosphate-buffered saline (PBS, pH = 7.4) three times and then fixed with 3.7% formalin for 15 min at room temperature. We removed the fixative and washed the cells with PBS three times, and then used 1 µg/mL DAPI (Thermo Fisher Scientific) to stain the nuclei. After 10 min of incubation, the fixed cells were thoroughly washed with PBS and then imaged with a 20× phase-contrast objective installed on an inverted microscope (ECLIPSE Ti, Nikon, Tokyo, Japan). We counted the TNTs following these two criteria: (1) the tube connected two cells, and (2) the tube length was longer than 50 µm.
FIB-SEM imaging
PANC-1 cells were cultured on well-cleaned and sterilized cover slips (22 mm × 22 mm). After treatment with the macrophage CMs, the cells were rinsed with PBS and then fixed with 3.7% formaldehyde for 15 min and later post-fixed with 1% OsO4 in PBS for 2 h. After triple PBS flushes, we replaced the medium with ethanol gradually from 10% (v/v in H2O) to 99.9%. The final samples were dried with a critical point dryer (EM CPD300, Leica Microsystems, Wetzlar, Germany). Before the FIB-SEM operation, the sample surface was sputtered with 10 nm gold to raise the conductivity. FIB-SEM operations were conducted with the FEI Helios NanoLab 660 (Thermo Fisher Scientific). The target area was firstly deposited with a 500 nm platinum protection layer via ion beam-induced deposition, rough-milled with 40 pA and then fine-milled with 7.7 pA gallium ion beams at a 30 kV acceleration voltage. All the SEM images were taken right after the FIB manipulations, acquired with a 25–50 pA beam current at a 1–5 kV acceleration voltage and an “in-lens” detector for the secondary electrons.
Cell migration speed analysis
We seeded PANC-1 cells at 5 × 104 cells/mL in a 35 mm dish under the normal cultivation condition overnight. The culture medium was then changed to the macrophage-CMs. We used a 10× phase-contrast objective to capture the time-lapse images of cells every 10 min for 48 h. In each experiment, the migration speeds of 45 cells were calculated using ImageJ.
Cell invasion assay
A sample of ~3 × 105 PANC-1 cells was re-suspended in a 6-well plate with the normal cultivation condition overnight. The culture media were changed to the macrophage CMs for another 48 hour culture. Then cells were starved for 24 hours in the serum-free medium prior to the invasion assay. About 5 × 104 cells were seeded into a well of the Transwell chamber (ab235697, Basement Membrane, 8 μm, Abcam) containing the normal culture medium in the bottom chamber. Cells were cultured for 24 hours then labeled with the fluorescence dye (Ex. 530 nm/ Em. 590 nm) for 60 mins according to the kit’s instruction. The fluorescence intensities of invading cells were measured by using a plate reader (Synergy 2, BioTek Instruments, Winooski, VT, USA) to evaluate the cell invasion percentage.
Quantitative polymerase chain reaction (qPCR)
Total RNA was purified using an RNeasy mini kit (217604, Qiagen, Hilden, Germany) and reverse-transcribed to cDNA with the High-Capacity RNA-to-cDNA™ Kit (4387406, Applied Biosystems™, Thermo Fisher Scientific). qPCR was performed with PowerTrack™ SYBR Green Master Mix (A46110, Applied Biosystems™) and LightCycler 480 (Roche, Basel, Switzerland). The results were normalized with actin as internal control and evaluated by using the 2−ΔΔCt method. Primers used in this study were synthesized by Genomics (New Taipei City, Taiwan) and listed in Table 1.
Table 1. Sequences of the primers for real-time PCR analysis.
Gene
|
Primer sequence (5’→3’)
|
VIM
|
forward: AATGACCGCTTCGCCAACT
reverse: ATCTTATTCTGCTGCTCCAGGAA
|
ZEB1
M-Sec
Cx43
ZO-1
CTNNB1
IL1B
TLR2
CCL22
ACTB
|
forward: TGAGCAAAACCATGATCCTAATGT
reverse: CAGGTGCCTCAGGAAAAATGA
forward: TGCTCCAGAACCTGCATGAGGA
reverse: AACTCAGGCAGCCTCGTGTCTA
forward: GACAAGGTTCAAGCCTACTCAACTG
reverse: TGTCCCCAGCAGCAGGAT
forward: CACGCAGTTACGAGCAAG
reverse: TGAAGGTATCAGCGGAGG
forward: AGCCGACACCAAGAAGCAGAGATG
reverse: CGGCGCTGGGTATCCTGATGT
forward: ATGATGGCTTATTACAGTGGCAA
reverse: GTCGGAGATTCGTAGCTGGA
forward: GCTCGGAGTTCTCCCAGTTTC
reverse: GAGCTGCCCTTGCAGATAC
forward: ATTACGTCCGTTACCGTCTG
reverse: TAGGCTCTTCATTGGCTCAG
forward: TGACGGGGTCACCCACACTGTGCCCATCTA
reverse: CTAGAAGCATTTGCGGTGGACGATGGAGGG
|
Confocal fluorescence imaging
For imaging the junction proteins, the PANC-1 cells were washed with PBS for three times and then fixed with anhydrous methanol for 10 min. The cells were permeabilized with 0.1% Triton X-100 for 10 minutes and blocked with 1% BSA in 1× PBS for 1h at room temperature. Cells were then incubated with the antibodies of ZO-1 (MA3-39100-A488, 1:100, Thermo Fischer Scientific) and b-catenin (ab32572, 1:250, Abcam) overnight at 4°C, and followed by a further incubation at room temperature for 1h with the Goat Anti-Rabbit (A11008, 1:1000, Invitrogen, Alexa Fluor®488) secondary antibody. Nuclear DNA was labeled with DAPI (62248, 1:1000, Thermo Fisher Scientific). Images were acquired with a confocal microscope (SP5, Leica Microsystems).
Cell viability test
PANC-1 cells were seeded at 5 × 103 cells/mL into a 96-well plate under the normal cultivation condition overnight. The culture medium was changed to the macrophage CMs for another 48 h of culture. The cell viability was quantified using the alamarBlue assay (DAL1100, Thermo Fisher Scientific).
Statistical analysis
All the data are presented as mean ± standard deviation. Comparisons between two groups were made by using a two-tailed Student’s t-test. Comparisons among data of more than two groups were conducted with one-way analysis of variance (ANOVA). Then the differences between specific two groups were checked with post hoc Tukey’s test.