Plant material
Plant material was collected from Dibrugarh District of Assam and was identified by Botanical Survey of India, Shillong (Ref.No. BSI/ERC/2010/AKV/181).
Preparation of crude plant extracts
Fresh leaves of Ocimum gratissimum were washed, shade dried and ground to powder using electric grinder and preserved in refrigerator at 40 C for future use until extraction. Crude extract of leaf powder was prepared in absolute ethanol solvent. 150g of ground leaves were dissolved in 350ml of the solvent and kept for 72h. Extracts were filtered by using Whatman Filter Paper No 1 after 72 h and the solvents were removed under vacuum below 400C.
Fractionation of ethanol extract
Ethanol extracts of the leaves of Ocimum gratissimum was further fractionated by using a series of solvents (Merck) on the basis of polarity namely petroleum ether, chloroform, butanol and water. Initially ethanol extract was prepared by dissolving ground leaf powder in absolute alcohol for 72h. The extract was then filtered and solvent was removed. The dried ethanolic extract was then weighed and taken in a separating funnel (2.5 liter) and petroleum ether was added and shaked for 30 minutes. It was then allowed to settle for 3h and the supernatant was decanted and filtered. The residue was extracted thrice adding same solvent and the filtrate was taken as petroleum ether extract. Sequentially the chloroform, butanol and water were added and each solvent extract was prepared similarly as petroleum ether extract and stored in refrigerator for bioassay.
Collection and preparation of plant essential oils
Fresh leaves of the plant were collected, washed to remove dust, cut into small pieces and subjected for oil extraction by hydrodistillation method using Clevenger type apparatus47. Two hundred grams (200g) of fresh leaves of the selected plantwas put in 5 L round bottom flask per extraction of oil. The essential oil floating above water layer was collected after 4 hours of heating. Anhydrous sodium sulfate was added in the collecting vial to absorb traces of water. The oil was then stored in sealed screw cap vial in deep freezer (-200C) for bioassay and analysis.
The percentage (v/w) of oil yield was calculated by using the following formula:
% of oil yield = Recovery of the Oil x 100
Weight of the plant
Culture of Exorista sorbillans Wiedemann
Maggots of Exorista sorbillans (uzi flies) were brought from Govt. Sericulture Farm of Assam and kept in wire-netted wooden box (size: 30cm x 30cm) in insect culture room, Department of Life Sciences, Dibrugarh University. The newly emerged adult flies were provided with 20% honey solution soaked in cotton in petriplates for feeding in a well-ventilated insect culture room under natural light and temperature conditions (Max: 32°C; Min: 190C).
Bioassay with fractionated ethanol extract against E. sorbillans
Five percent concentration of petroleum ether extract, chloroform extract, butanol and water extracts derived from fractionation of ethanolic extracts were bioassayed against third day old adult uzi fly using contact residual film technique. 1.5ml of 5% concentration of each solution was applied into Whatman (110 mm) filter paper which was pasted in a petri dish and was allowed to dry in room temperature and then flies were released. The treated petri plates were covered by 110mm diameter glass funnel. The stem at terminal end of the funnel was covered with nylon net and thus aeration was facilitated to insects during treatment hours. For each experiment control was maintained where only the respective solvent was applied. Three replications were kept for each treatment and control set. Observation was taken at 1, 3, 6, 24, 30, 48 hours from the time of application. Abbot’s correction factor48 was applied in case of mortality of fly in control if occurred.
Bioassay with effective solvent extract against E. sorbillans:
The fractionated ethanolic extract which gave more than 50% death of E. sorbillans after 24h of treatment at 5% concentration was considered for further bioassay to get sub lethal concentration (LC50). For the purpose, different concentrations (0.01 to 15% at geometrically uniform interval) of the effective extract was prepared and subsequent bioassay against third day old adult uzi fly was carried out by contact residual film technique to determine LC50 value of the most effective solvent extract. Probit analysis was done for calculating LC50 using SPSS software.
Bioassay with essential oil of O.gratissimum
Bioassay by using essential oil of Ocimum gratissimum against E. sorbillans was carried out by contact residual film technique as described above. Essential oil solutions of O. gratissimum were prepared in acetone solvent. For control, only acetone solvent at an amount of 1.5ml was applied to Whatman No.1 Filter paper against each test concentration. Third day old adult uzi flies were subjected to treatments. Three replications, each containing 10 insects were maintained for each treatment. Different concentrations of oil (0.01 to 0.5%) were prepared for determining LC50 value of essential oil of O. gratissimum. Lethal time for the essential oil against E. sorbillans was calculated by applying 1µl of crude essential oil topically, on thorax of the third day old uzi flies with the help of micropipette.
Fourier Transfer Infrared Spectrograph (FTIR) analysis of active fraction and essential oil of the plant
To identify the functional group of the constituent compounds, present in the bioassay guided active fractions of petroleum ether extract and essential oil of the O. gratissimum, FTIR analysis was performed. For this the fractionated active petroleum ether extract and essential oil was dissolved in chloroform. Spectra were taken in neat mode using Shimadzu Prestige-21 FTIR spectrophotometer.
TLC (Thin layer chromatography) separation of essential oil of Ocimum gratissimum:
Initially three solvent systems comprising of petroleum ether (boiling point 40-600C) and ethyl acetate at the ratio of 10:1, 7:1 and 5:1 were prepared for separation of individual spots of the essential oils in aluminium TLC sheet (Merck). Finally, fractionation of oils was done using preparative TLC plate using the solvent system comprising of petroleum ether and ethyl acetate (5:1). Different fractions from the TLC plate were collected in the the solvent mixture and solvent was removed by distillation with temperature set at 400C.
Bioassay with different fractions of essential oil obtained from TLC and GC-MS analysis of active fraction:
Bioassay of each individual fraction obtained from TLC was carried out by contact residual film technique using acetone (Merck) as solvent. Further GC-MS analysis of the best active fraction of oil was carried out to identify the compounds present in the active fraction of the oil.
For determining the compounds present in the active fraction of essential oil of O. gratissimum GC-MS analysis was done by using Jeol, Accu TOK GCV JMS-T100GCV MODEL. Column was HP5, 30-meter-long, 0.25mm ID and 0.25nm film thickness. The conditions applied were: Injector temperature 250 0C; Interface temperature 2800C. Column program was 800C - 1 min, hold 50C/Min- 2500C-10 Min, Hold-300C/Min- 2800C. Carrier gas was Helium. Flow rate 1ml/min. Injection volume 0.2µl. Split ratio 1:100.
Preparation of O.gratissimum essential oil based combination and bioassay against E.sorbillans:
Based on essential oil of O. gratissimum, initially six combinations were prepared and tested on 3rd day old adult E. sorbillans using fumigant mode of application. Essential oil of some other locally available plants namely Ocimum sanctum (Lamiaceae), Eucalyptus maculata(Myrtaceae), Callistemon linearis(Myrtaceae), Citrus sinensis (Rutaceae) were considered to add as ingredient of combination on the basis of their efficacy obtained in our pilot studies. Topical application of each candidate essential oil at a dose 1µl per insect on thoracic region was done on third day old adult fly and lethal time was recorded. The prepared combinations for fumigant application were 5:0G, 4:1GOs, 4:1GEm, 4:1GCl, 4:1GCs and M. Synthetic gum (GripFix Adhesive Paste) was used as control release agent. The combination 5:0G comprised 5µl essential oil of O. gratissimum in total of 5ml synthetic gum. The combination 4:1GOs comprised 4µl essential oil of O. gratissimum and 1µl of O. sanctum in total of 5ml synthetic gum. The combination 4:1GEm comprised of 4µl essential oil of O. gratissimum and 1ul of E. maculate in total of 5ml synthetic gum. The combination 4:1GCl comprised of 4µl essential oil of O. gratissimum and 1µl of C. linearis in total of 5ml synthetic gum. The combination 4:1GCs comprised of 4µl essential oil of O. gratissimum and 1µl of C.sinensis in total of 5ml synthetic gum and the combination M comprised of equal amount of essential oil of Ocimum gratissimum(1µl), Ocimum sanctum(1µl), Eucalyptus maculata(1µl), Callistemon linearis(1µl), Citrussinensis(1µl) in 5ml of synthetic gum. Fumigant mode of application was chosen for bioassay studies of each prepared combination against uzi fly. Freshly prepared combination was poured into plastic cap (cap of 15ml screw cap vial) and wrapped by muslin cloth from upper side and placed in conical flask of 500ml capacity. The muslin cloth prevented the flies to come in direct contact of the combination but allowed the vapor to come out and spread uniformly in the enclosed chamber (500ml volume). After keeping the formulation containing cap in the conical flask, 10 numbers of flies were released in each replication and the flask was sealed with the help of aluminium sheet and tightened by rubber band to keep the air blocked inside the flask. Response of the flies in terms of knock down and mortality was recorded from 1minute to 24hours at successive time interval.
Preparation of combination from essential oil compounds and bioassay against E.sorbillans:
Based on the efficiencies of combinations prepared from crude essential oil, further combinations were prepared by selecting essential oil compounds which have been reported and identified as major constituent compound of the concerned plant essential oils. These were Carvacrol, Thymol, Eugenol, Eucalyptol and Citral. Carvacrol and Thymol are the constituent compounds of O.gratissimum, Eugenol is the constituent compound of O.sanctum, eucalyptol is the constituent compound of both E. maculata, and C.linearis, citral is the constituent compound of C. sinensis. Two combinations were prepared taking these compounds. Fumigant mode of application was used for bioassay studies. Synthetic gum was used as control release agent and plastic cap was used into which the prepared combination was poured Combination marked as MII was prepared by mixing equal amount of Carvacrol (1ul), Thymol(1ul), Eugenol(1ul), Eucalyptol(1ul) and Citral (1ul) into a total of 5ml synthetic gum. Three replications were set for each combination. Another formulation C1 was prepared by mixing 5ul of carvacrol into 5ml of synthetic gum and the prepared formulation was kept in conical flask having500ml capacity. Flies were then subjected to get exposure of the formulation and mortality data were recorded against time interval.
Docking performance of major essential oil compounds with acetylcholinesterase enzyme:
Ligand Preparation:
The 2 D structure of three ligands were drawn using pubchem search tool in NCBI and converted in to 3D structure with the help of Chimera software and subsequently saved in pdb format.
Receptor Protein Preparation:
Acetylcholinesterase enzyme of Exorista sorbillans was selected as targeted protein for the ligand. The protein sequence (ACHE) was downloaded in FASTA format from protein database in NCBI and pasted in notepad. Protein BLAST was performed and based on blast result four pdb ids were selected as template protein (1dx4; 1qo9;5ydi;6arx;6ary) to construct model of ACHE protein of E. sorbillans. The selected template protein structures were downloaded from the PDB site (http://www.rcsb.org). For preparation of ACHE protein model, the Modeller 9.21 was used following the steps of basic modelling using the commands like build_profile.py, compare.py, align2d.py, evaluate_model.py. the generated models were uploaded in Procheck online service and Ramachandran plot for each model was obtained. Considering maximum percent value of amino acid residues present in most favored region and minimum in disallowed region, the most suitable model was selected for further docking with the selected ligands.
Docking:
Docking of the best model of ACHE protein was performed with essential oil compounds namely carvacrol, thymol, eugenol, eucalyptol, citral and the substrate acetylcholine in Python Molecular Viewer (PMV1.5.6) using AUTODOCK VINA49 in MGL tools. Best nine mode of interactions were generated for each docking with respective affinity values and rmsd values. The best mode for each docking having least rmsd value and high binding affinity were considered for analyzing the mode of binding interactions. Pictorial representation of binding interactions was analyzed in PMV and ligplus software.