2.1. Study subjects
Study population consisted of 200 healthy men, aged between 30-55 years, from Kermanshah who have referred to Motazedi Hospital in Kermanshah for diagnosis of infertility. Based on place of residence and spermogram analysis (according to the WHO standards), samples were divided into two groups: 1) 100 men infertile patients (men who participated in the imposed Iran–Iraq war or live in war zones of Kermanshah) and 100 men fertile (men who did not participate in the imposed war and live in non-war zones of Kermanshah). The study was approved by the Research Ethical Committee of Baqiyatallah University of Medical Sciences (IR.BMSU.REC.1399.317). Informed consent was obtained from each participant before participation. The exclusion criteria were samples with an infection bacteria or viruses, subjects with a history of diseases (diabetes mellitus, chronic diseases, hypertension and varicocele) and smoking.
Semen samples were collected by masturbation into wide-mouthed sterile containers after 48 hours of abstinence. After liquefaction of semen samples in an incubator at 37 ° C, A portion of semen sample was used for routine analysis of semen parameters (macroscopic and microscopic parameters) according to World Health Organization (WHO-2010) (Organization 2010) and a portion of semen sample was used for assessment of sperm DNA fragmentation. The rest of the semen sample was centrifuged at 600 g for 10 minutes to separate the sperm cell from the seminal plasma, and stored at -20°C for subsequent measurements.
6 milliliters of fasting blood was received from each subject, 3 milliliters of which was transferred into tubes containing anticoagulants (EDTA) for DNA extraction and another 3 milliliters were poured into anticoagulant-free tubes to isolate serum samples for analysis of SIRT1 and SIRT3 in serum.
2.2. Assessment of antioxidants and oxidative stress biomarkers
The level ofmalondialdehyde (MDA) (Lipid peroxidation marker) was determined by reverse phase high-performance liquid chromatography (HPLC) (Agilent Technologies1200 Series). Device specifications included Nucleodur100–5 C18ec column (Macherey-Nagel, Duren, Germany), a fluorescence detector using EC 250/4.6, mobile phase 60:40 V/V of methanol: potassium monobasicphosphate buffer (50 Mm) and detection, Ex515-Em555 (Nasiri et al. 2021).
Superoxide dismutase (SOD) activity was measured by Kiazist SOD kit (Kiazist, Iran). This protocol employs the production of superoxide radicals by xanthine oxidase.
2.3. Determination of Sperm DNA fragmentation
Sperm chromatin dispersion (SCD) test (Halosperm kit INDAS) used for detecting DNA fragmentation in sperm. In SCD method, the spermatozoa with non-fragmented DNA shown a large halo dispersed DNA loops, whereas the spermatozoa containing fragmented DNA display very small or no halos (Medicine 2013).
2.4. Assessment of SIRT1 and SIRT3 assay
To measurement of SIRT1 and SIRT3, 3 ml fasting blood sample was taken. Serum SIRT1 and SIRT3 were determined by Enzyme-Linked Immunosorbent Assay (ELISA) kit (Eastbiopharm, Hangzhou, USA).
2.5. DNA extraction and genotyping
The standard procedure of phenol-chloroform method was used to DNA extraction of whole blood leukocytes (Chacon Cortes et al. 2014, Mohammadi-Noori et al. 2020). The genotypes of SNPrs3758391 (SIRT1) and SNPrs185277566 (SIRT3) were determined by PCR–RFLP technique. Based on gene sequences in the GeneBank, From Primer 3 online website (https://primer3.ut.ee/) was used to design the pair of primers sequences of SIRT1 rs3758391 and SIRT3 rs185277566 SNPs.
The forward (F); 5′-TGGCCAGAACCCATACTAGG-3′, and reverse(R); 5′-AGCCCTTCCACTTTCCTCTC-3′, primers were used to determined SIRT1-3758391 SNP. PCR reaction was carried out in total volume of 25 µL (18 μL of ddH2O, 0.5 μL of dNTPs at a concentration of 10 mM, 0.75 μL of MgCl2 at a concentration of 50 mM, 2.5 μL of 10X PCR Bufer, 1 µL of each primer (F and R) at a concentration of 10 pmol and 0.2 μL of Taq DNA Polymerase at a concentration of 5 U/µL). The PCR protocol consisted of 1cycle initial denaturation (at 95 °C for 5 min), and 40 cycles amplification (at 95 °C for 30 seconds , 61.3 °C for 30 seconds, 72 °C for 30 seconds ), with a final extension at 72 °C for 10 min. Almost 20 µL of PCR product at 37 °C overnight was digested by StyI enzyme. The digested products were electrophoresed in 2% agarose gel. The homozygote mutant CC was not cleaved by the StyI enzyme and a fragment with a length of 205 bp was created, heterozygote mutant TC fragments were 205 bp, 120 bp, 85 bp and homozygote wild TT fragments were 120 bp, 85 bp as shown in Fig1A.
The forward (F); 5′-ACCCCAGAACGCCATGTT-3′, and reverse(R); 5′-TGAGACACCAGACTAGGGAACTT-3′, primers were used to determined SIRT3-185277566 SNP. PCR reaction was carried out in total volume of 25 µL (16 μL of ddH2O, 2 μL of DMSO, 0.5 μL of dNTPs at a concentration of 10 mM, 0.75 μL of MgCl2 at a concentration of 50 mM, 2.5 μL of 10X PCR Bufer, 1 µL of each primer (F and R) at a concentration of 10 pmol and 0.2 μL of Taq DNA Polymerase at a concentration of 5 U/µL). The PCR protocol consisted of 1cycle initial denaturation (at 95 °C for 5 min), and 40 cycles amplification (at 95 °C for 30 seconds , 55 °C for 30 seconds, 72 °C for 30 seconds ), with a final extension at 72 °C for 10 min. Almost 20 µL of PCR product at 37 °C overnight was digested by Cfr421 enzyme. The digested products were electrophoresed in 3% agarose gel. The homozygote wild CC was not cleaved by the Cfr421 enzyme and a fragment with a length of 246 bp was created, heterozygote mutant CG fragments were 246 bp, 186 bp, 60 bp and homozygote mutant GG fragments were 186 bp, 60 bp as shown in Fig1B.
2.6. Statistical analysis
The normality of distribution of quantitative data was evaluated by Kolmogrov-Smirnov (KS) test. Continuous and comparison data were performed using the Independent t-test or Mann–Whitney test. SPSS (version 16, Chicago, IL) was used for analyzing data and Statistical significance was assumed at the p ≤ 0.05. The frequencies of the genotypes and allele (SIRT1 and SIRT3) in patients and control groups were compared by Chi-square test. Odds ratios (OR), 95% confidence intervals (CI) and interaction between the two polymorphisms (SIRT1 T3758391C and SIRT3 C185277566G) were determined by SPSS logistic regression. Pearson correlation was used for Correlation between SIRT1 and SIRT3 levels with evaluated parameters.