Culture, maintenance, and treatment of RAW 264.7 cells
Mouse macrophage cell line RAW 264.7 was procured from American Type Cell Culture (ATCC-TIB-71) and maintained in high glucose DMEM with 10% fetal bovine serum (FBS) (Cat# 30-2020, ATCC), standard culture conditions (5% CO2, 37oC, and antibiotics). Upon 70-80% confluency the cells were split using cell scraper by retaining one-third culture media and replenishing two-third fresh media. LDL was isolated from hyperlipidemic swine plasma and minimally ox-LDL was prepared by controlled oxidation using 5μM CuSO4 following the previously reported protocol [7] [8]. The level of oxidation was confirmed by the level of TBARS as determined by ELISA kit (CAYMAN CHEMICAL, Cat#: 10009055). The cells were treated with 200 μg/ml oxLDL and 400 μg/ml LDL in serum-free media for the investigation, and the cells treated with 100 μg/ml lipopolyscaccharide (LPS from E. coli (L3024, Sigma) and the untreated cells were used as treatment and comparison controls, respectively.
Immunofluorescence
The cells were cultured in 8-well chamber slides and the expression of protein biomarkers was determined using immunostaining following our previous protocols [9]. Primary antibodies (1:400 dilution) against TLR2 (ab213676), TLR4 (ab13556), HMGB1 (ab11354), RAGE (ab37647), ASC (ab175449), NLRP3 (ab214185), Caspase-1 (ab74279), IL-1β (ab156791), TREM1 (ab200729), NF-κB (ab86299) and IL-18 (ab106939) were used for staining and respective fluorochrome conjugated secondary antibodies (1:400) were used for detection. Nuclei were counterstained with 4′,6-diamidino-2-phenylindole (DAPI) and imaged using a fluorescent slide scanner microscope (Leica Thunder, Germany). The experiments were performed with a negative control for fixing the exposure time and to minimize the background. The mean fluorescence intensity (MFI) normalized with the number of nuclei was used to calculate the log2 fold-change (FC) following our previously reported protocol [10].
Lipid droplets staining
Intracellular lipid droplets were stained using LipidSpot™ 488 dye (Cat# 70065, Biotium) in the RAW 264.7 cells cultured in 8-well chamber slides following the manufacturer’s instructions. Post-treatment cells were incubated with the dye for 30 min at 370C and the live cell imaging was performed using a fluorescent microscope (Leica Thunder) under blue filter. The MFI was quantified, and the results were represented as log2 FC as mentioned above.
Lipid Peroxidation Assay
Lipid peroxidation following the treatment with LDL and oxLDL on RAW 264.7 macrophages grown in chamber slides was assessed using Image-iT Lipid Peroxidation kit (C10445, Life technologies) according to the manufacturer’s instructions. Following the treatment, the cells were washed with serum-free DMEM and incubated with 200µl of Image-iT® Lipid Peroxidation Sensor (10mM in DMSO) for 30 minutes at 37oC, washed with serum-free DMEM, and imaged under fluorescence slide scanner (Leica Thunder) at 590 nm and 510 nm. The cells treated with LPS (100μM) were used as treatment control and the untreated cells were used as controls. The ratio of the emission fluorescence intensities at 590nm to 510nm reflects the extent of lipid peroxidation. RAW 264.7 cells treated with cumene hydroperoxide (CuP) at a final concentration of 100µM for 2 hours at 37°C in each group served as the positive control.
Mitochondrial density
The mitochondrial density in the post-treatment RAW 264.7 cells cultured in 8-well chamber slides were determined using MitoView™ Green (Cat# 70054, Biotium) following the manufacturer’s instructions. The cells were incubated with the 100 nM dye for 15 min at 370C and the live cell imaging was performed using a fluorescent microscope (Leica Thunder) under blue filter. The MFI proportionate with the mitochondrial content and the results were represented as log2 FC.
Mitochondrial superoxide
The status of ROS in the RAW 264.7 cells was examined by determining mitochondrial superoxide using MitoSOX Red (M36008, Invitrogen) following our published protocol [11]. The RAW 264.7 cells under treatment were cultured in 8-well chamber slides and were treated with 5µM MitoSOX Red reagent for 10 min and the live cell imaging was performed using a fluorescent microscope (Leica Thunder) mounting in DMEM (serum free). The untreated cells served as the control. MFI values were quantified, and the results were represented as Log2 FC.
Mitochondrial pore transition
The mitochondrial pore integrity was assessed in the RAW 264.7 cells in various treatment groups using Image-iT LIVE mitochondrial transition pore assay kit (I35103, Invitrogen) following our previously reported protocol [11]. The cells were incubated in 200µl labeling solution containing 1µl each of 1mM calcein AM, 200µM MitoTracker Red, 1mM Hoechst 33342, and 1mM CoCl2 in serum free DMEM at 37oC for 15 min, washed with serum-free DMEM and immediately imaged under fluorescence slide scanner (Leica Thunder). The untreated cells were used as control and the results are presented as Log2 FC with respect to the control.
Microtubule staining and cell spreading
The microtubule integrity was assessed in the RAW 264.7 cells using ViaFluor 488 Live Cell Microtubule Stain kit (70062-T, bioitum) following the manufacturer’s instructions. Following the treatment, the cells were washed with serum-free DMEM, incubated in 200µl probe-containing medium (1µl/ml) at 37oC for 30 min, washed with serum-free DMEM and immediately imaged under fluorescence slide scanner (Leica Thunder). The untreated cells were used as control and the experiments were run in triplicate. Individual cells from the images were randomly assessed for the area (n=30) and perimeter (n=30) to examine the cell spreading using ImageJ software. The results are expressed as Log2 FC with respect to control.
Gene expression
The RAW 264.7 cells were treated as mentioned above, total cellular RNA was isolated using the trizol method, and cDNA was synthesized using 1μg RNA from each group using cDNA synthesis kit (Promega) following the manufacturer’s protocol. The mRNA transcripts for the genes TLR2, TLR4, IL-18, IL-1β, ASC, and NLRP3 were amplified by real-time PCR (Applied Biosystems, CA, U.S.A.) using SYBR Green chemistry employing appropriate forward and reverse primers (Table 1) following the program detailed in our previous protocol [12]. The GAPDH was used as a housekeeping reference gene. The mRNA expression was quantified by 2^-ΔΔCT method with respect to GAPDH and the results are presented as Log2 FC with respect to normal control.
Table 1
List of primers used in qRT-PCR
Primers
|
Sequence (3’-5’)
|
ASC (F)
|
TGCCAGGGTCACAGAAGTGG
|
ASC (R)
|
CTTCAAGGCCTGGAGGAGGG
|
IL-1B (F)
|
GCCACCTTTTGACAGTGATGAGA
|
IL-1B (R)
|
TGCCTGCCTGAAGCTCTTGT
|
IL-18 (F)
|
ACTGGCTGTTCCCACAACGA
|
IL-18 (R)
|
CAGCACACCACAGGGGAGAA
|
NLRP3 (F)
|
GACACGAGTCCTGGTGACTTT
|
NLRP3 (R)
|
TCATCTTCAGCAGCAGCCCTT
|
TLR4 (F)
|
ATGCTACAGCTCACCTGGGG
|
TLR4 (R)
|
CTTCTGCCCGGTAAGGTCCA
|
TLR2 (F)
|
TGGTGCCCAGATGGCTAGTG
|
TLR2 (R)
|
AGGAAACAGTCCGCACCTCC
|
GAPDH (F)
|
GGAAAGCTGTGGCGTGATGG
|
GAPDH (R)
|
TACTTGGCAGGTTTCTCCAGG
|
Statistical analysis
The results of immunofluorescence (n=3), staining (n=3) and the PCR (n=4) experiments are expressed as mean ± SEM. For the staining experiments, the nuclei were counted using ImageJ software with ‘Analyze particle’ mode and the average MFI of 2-4 images randomly acquired from different fields of the experimental set were used to calculate the log2 FC [13]. The images that displayed background fluorescence were exempted from the analysis. Similarly, the PCR results were expresses as log2 FC with respect to the control. The statistical significance was assessed by one-way ANOVA following two-stage linear step-up procedure of Benjamini, Krieger and Yekutieli using GraphPad Prism software. The p<0.05 values were used to determine the significant difference between the experimental groups.