2.1 Photo-thrombosis (PT) stroke model and neurological evaluation
The animal experimental procedures were approved by the Ethics Committee of the Laboratory Animal Center of Sun Yat-sun University, Guangzhou, China, and were carried out in accordance with the ARRIVE guidelines. The animal was randomly divided into four group: sham control, PT group, PT+AAV-negative control (AAV-NC) and PT + AAV-shTUG1 group (n=18 per group). Anesthesia for all surgical procedures was achieved using an injection of 10% chloral hydrate (3 ml/kg, i.p.).
PT stroke model was established as previously reported[17]. In brief, adult male C57BL/6 mice were anesthetized and fixed on a stereotaxic instrument. An irradiation window was centered 1 mm lateral and right posterior to the bregma on the exposed skull. Immediately after an injection of photochemical dye Rose Bengal (20 mg/kg) (MP Biomedical, CA, USA) via the tail vein, the mice were illuminated with green light at 540 nm through the irradiation window at 2 mm diameter for 2 minutes. A laser speckle contrast imaging system (PeriCam PSI HD system, Stockholm, Sweden) was used to record the real-time changes of cortical blood flow in vivo. A laser probe was positioned about 12cm above the skull and the selected region of interest (ROI) area was 1 mm2. We recorded 120 consecutive speckle images of mice for 2 minutes by a laser speckle contrast imaging system (PeriCam PSI HD, Stockholm, Sweden) . The real-time change of cortical blood flow at each time point in ROI was normalized and expressed as a relative value. The sham group was only illuminated without the injection of Rose Bengal. Throughout the procedure, respiratory status was in a smooth condition and body temperature was kept at 37.5°C with a heating pad.
Neurological function was blindly assessed in each group before and 24 hours after PT with a modified neurologic severity score (mNSS)[18]. The mNSS consists of a comprehensive test of motor, sensory, and reflex activities, with a score range of 0–14 points (1–4 as mild injury, 5–9 as moderate injury, 10–14 as severe injury).
2.2 TUG1 knockdown in vivo
Three weeks before PT, 2.5 μL of AAV-shTUG1 (1 × 1012 v.g./mL, Gene Chem, Shanghai, China) was continuously infused into the lateral ventricle at a rate of 0.2 μl/min to knock down TUG1. The infusion was made via a microliter syringe (Hamilton Co., NV, USA) at the following stereotaxic coordinates: 0.3 mm posterior to the bregma, 1 mm right lateral to the midline, 2 mm beneath the surface of the skull. After the infusion was completed, the needle was kept in position for 15 minutes and then slowly pulled out. The wound was closed by bone cement and skin glue. AAV-NC (Gene Chem) was used as the control following the same operation.
2.3 Cortex tissue collection and staining
Twenty-four hours after PT or sham PT, 15 mice from each group were anesthetized and sacrificed. For immunofluorescence, the brains from six mice were perfused and post-fixed with 4% paraformaldehyde at 4℃ for 8 hours. Series of adjacent 10μm coronal frozen sections were collected at the infarcted level. For western blot and real-time quantitative PCR (qRT-PCR), the brains from the other six mice were perfused with pre-cooling heparinized saline. Subsequently, the peri-infarction cortex tissue was quickly obtained and stored at −80℃.
An anti-NeuN antibody (Abcam, Cambridge, UK) and an anti-Iba-1 antibody (WKAO, Tokyo, Japan) was used to mark cortical neurons and microglial cells, respectively. Sections were first incubated with the NeuN antibody or the Iba-1 antibody at 4℃ overnight followed by species-specific Alexa Fluor plus 555-or 488-conjugated antibody (Thermo Fisher Scientific, MA, USA) at room temperature for 1 hour. Thereafter, sections were counterstained with DAPI and analyzed under a fluorescence microscope (Nikon DS-Ri2, Japan). To observe the gross infarcted zone, small 2mm coronal blocks from the brain were stained with 2,3,5-Triphenyltetrazolium chloride (TTC, Solarbio, Beijing, China) at room temperature for 30 minutes, then photographed and calculated using the ImageJ software (National Institutes of Health, MD, USA).
2.4 Cell culture and OGD
BV-2 microglial cells (Kunming Cell Bank, Chinese Academy of Sciences) were cultured in Dulbecco’s modified eagle medium (Gibco, CA, USA) containing 10% fetal bovine serum (Thermo Fisher Scientific) and 1% antibiotics (TransGen Biotech, Beijing, China) in a humidified incubator under 5% CO2 at 37℃. Cells were split at 70%–80% confluence. OGD was induced to mimic ischemic conditions in vitro[16]. Briefly, cells were cultured in glucose-free Dulbecco’s modified eagle medium, and flushed with 95% N2/5% CO2 gas mixture at a flow rate of 4 l/min for 10 minutes to create an anaerobic condition. A gas analyzer (Coy Laboratory, MI, USA) was used to monitor the anaerobic condition. Cells were then transferred to normal culture medium under 5% CO2 for reoxygenation. Our previous study showed that the regimen of OGD for 4 hours and reoxygenation for 24 hours was able to induce pivotal signaling events in cells without causing excessive death[16]. Control cells were treated without OGD.
2.5 Cell transfection
TUG1 small interfering RNA (siTUG1), pcDNA3.1-TUG1 vector, miR-145a-5p mimics, miR-145a-5p inhibitor as well as their NCs were constructed by Tsigke (Guangzhou, China) and GenePharma (Guangzhou, China), respectively. The corresponding sequences are listed in Table 1. A lipofectamine 3000 reagent kit (Invitrogen, CA, USA) was used to transfect the cells (3´106/well) in a 6-well plate according to the manufacturer’s protocols. The amount of transfection was 2.5μg for pcDNA3.1-TUG1 vector and its control, or 150 nmol for the others. Transfected cells were incubated 24 hours and then subjected to OGD treatment. The efficiency of transfection was confirmed by qRT-PCR.
Table 1 Nucleotide sequences used in the study
Name
|
Primer
|
Sequences
|
siTUG1
|
Sense
|
5’-CCAUCUCACAAGGCUUCAATT-3’
|
|
Anti-sense
|
5’-UUGAAGCCUUGUGAGAUGGTT-3’
|
siTUG1 NC
|
Sense
|
5'-UUCUCCGAACGUUGUCACGUTT-3'
|
|
Anti-sense
|
5'-TTAAGAGGCUUGCACAGUGCA-3'
|
mmu-miR-145a-5p mimics
|
Sense
|
5'-GUCCAGUUUUCCCAGGAAUCCCU
|
|
Anti-sense
|
5'-GGAUUCCUGGGAAAACUGGACUU-3'
|
mimics NC
|
Sense
|
5'-UUCUCCGAACGUGUCACGUTT-3'
|
|
Anti-sense
|
5'-ACGUGACACGUUCGGAGAATT-3'
|
mmu-miR-145a-5p inhibitor
|
|
5'-AGGGAUUCCUGGGAAAACUGGAC-3'
|
inhibitor NC
|
|
5'-CAGUACUUUUGUGUAGUACAA-3'
|
GAPDH
|
Forward
|
5’-TGCCCAATTCCACCAAGGAA-3’
|
|
Reverse
|
5’-CTGCCAACCTTCTATACGCCT-3’
|
TUG1
|
Forward
|
5'-CAAACCTGGCTCTACAATCCTATT-3'
|
|
Reverse
|
5'-CATTCAGCAATCAGGAGGCAC-3'
|
U6
|
Forward
|
5'-CTCGCTTCGGCAGCACATATACT-3'
|
|
Reverse
|
5'-ACGCTTCACGAATTTGCGTGTC-3'
|
miR-145a-5p
|
miR-145a-5p RT
|
5'-CTCAACTGGTGTCGTGGAGTCGGCAATTCAGTTGAGGGGATTCC -3'
|
|
Forward
|
5'-ACACTCCAGCTGGGGTCCAGTTTTCCCAGG -3'
|
|
Reverse
|
5'-GGTGTCGTGGAGTCG -3'
|
2.6 qRT-PCR
Total RNAs were extracted from BV-2 cells or peri-infarction cortex tissue using a RNAzol RT reagent (MRC, OH, USA), followed by the reverse-transcription to cDNA using a PrimeScript™ RT reagent kit (Takara, Japan) according to the manufacturer’s instructions. The relative level of TUG1 or miR-145a-5p to GAPDH or U6 was quantitatively measured in 2-ΔΔCt method using a TB Green® Premix Ex Taq™ kit (Takara) on ABI 7,500 real-time system (Applied Biosystems, CA, USA). The primer sequences were synthesized by Tsigke (Guangzhou) and are listed in Table 1. All samples were performed at least three parallel reactions.
2.7 Western blot
Proteins were extracted from peri-infarction cortex tissue or cultured cells using RIPA lysis buffer plus 10 µl/mL protease inhibitor (Thermo Fisher Scientific). The protein concentration was quantified using a BCA protein assay kit (Thermo Fisher Scientific). Equivalent amount of proteins from each sample was resolved by SDS-PAGE and transferred to polyvinylidene fluoride membranes. Blots were incubated at 4℃ overnight with the following primary antibodies: TLR4, p-p65, p65, gasdermin D (GSDMD), apoptosis-associated speck-like protein containing CARD (ASC), IL-1β, IL-18, and GAPDH (all 1:1000, Affinity Biosciences, OH, USA); NLRP3 (1:1000, Abcam); casp-1 (1:1000, AdipoGen, Liestal, Switzerland). Antibodies binding to blots were visualized using an HRP-linked secondary antibody kit (1:3000, CST, MA, USA). The relative levels of proteins to GAPDH were measured using ImageJ software.
2.8 ELISA
Blood samples from the ocular vein of mice and cultured supernatant from BV-2 cells in different treatment groups were carefully collected and centrifuged to remove cell debris and concretionary stuff. The concentration of IL-1β and IL-18 in the serum and the cultured supernatant were quantified using specific ELISA kits (Elabscience, Wuhan, China) following the manufacturer’s instructions. A standard curve by using a standard solution was made to normalize the measurement.
2.9 Dual luciferase reporter gene assay
The putative binding sites between miR-145a-5p and TLR4 are predicted by searching an online database (http://www.targetscan.org). The 3’UTRs of both wild type and mutated TLR4 (TLR4 3’-UTR-WT or 3’-UTR-MUT) were constructed by Tsigke (Guangzhou), and separately inserted into the pmirGLO vector (Promega, Madison, USA). The TLR4 3’-UTR-WT or 3’-UTR-MUT vector, as well as miR-145a-5p mimics or mimics NC were co-transfected into BV-2 cells using a lipofectamine 3000 reagent kit (Invitrogen). Transfected cells were harvested 48 hours later and the luciferase activity was detected using a dual-luciferase reporter assay kit (TransGen Biotech, Beijing, China) according to the manufacturer's instructions.
2.10 Statistical analysis
All data were analyzed with GraphPad Prism 8.0 software (GraphPad Inc., CA, USA) in a blinded manner without knowledge of the treatment assignment. Numerical data were presented as the mean ± standard deviation. Student’s t-test or a general linear model with Bonferroni correction for analysis of variance was used to detect any intergroup differences when appropriate. A two-tailed P-value of 0.05 or less inferred statistical significance.