Study subjects
Our study included in 508 CHD patients and 510 healthy individuals. The basic information of the cases and controls were shown in Table 1. The average age was 62.17 ± 10.34 years in the cases and 61.12 ± 9.02 years in the controls. There was no significant differences in age, gender, and urea between the cases and controls (p = 0.084, p = 0.964, p = 0.759, respectively). There were significant comparisons in creatinine, uric acid, total-cholesterol, and apolipoprotein AI between the cases and controls (all p < 0.05).
Table 1
Basic characteristics of CHD patients and controls
Characteristics
|
Cases (n = 508)
|
Controls (n = 510)
|
p
|
Age, years (mean ± SD) a
|
62.17 ± 10.34
|
61.12 ± 9.02
|
0.084
|
> 60
|
282 (55.5%)
|
284 (55.7%)
|
|
≤ 60
|
226 (45.5%)
|
226 (44.3%)
|
|
Gender b
|
|
|
0.964
|
Male
|
334 (65.7%)
|
336 (65.9%)
|
|
Female
|
174 (34.3%)
|
174 (34.1%)
|
|
Urea (mmol/l) c
|
462.01 ± 4.50
|
456.63 ± 2.67
|
0.759
|
Creatinine (umol/l) c
|
384.73 ± 3.40
|
456.07 ± 3.50
|
< 0.001
|
Uric acid (umol/l) c
|
431.26 ± 1.08
|
489.10 ± 2.07
|
< 0.001
|
Total-cholesterol (mmol/l) c
|
369.60 ± 1.00
|
548.04 ± 1.05
|
< 0.001
|
Apolipoprotein AI (g/l) c
|
247.13 ± 5.74
|
351.08 ± 0.70
|
< 0.001
|
Smoking status
|
|
|
|
Smoker
|
231 (45.5%)
|
115 (22.5%)
|
|
Nonsmoker
|
186 (36.6%)
|
167 (32.7%)
|
|
Missing
|
91 (17.9%)
|
228 (44.8%)
|
|
Drinking status
|
|
|
|
Drinking
|
52 (10.2%)
|
124 (24.3%)
|
|
Nondrinking
|
306 (60.2%)
|
135 (26.5%)
|
|
Missing
|
150 (29.6%)
|
251 (49.2%)
|
|
Diabetes
|
190 (37.4%)
|
|
|
Non diabetes
|
318 (62.6%)
|
|
|
Hypertension
|
362 (71.3%)
|
|
|
Normal tension
|
146 (28.7%)
|
|
|
pa value was calculated by Student ′s t-test. pb value was calculated by Pearson ′s χ2 test. |
pc Mann-whitney test is used. |
Association analyses between CYP7B1polymorphisms and CHD risk
A total of seven SNPs (rs7836768, rs62519827, rs62519841, rs10808739, rs13276608, rs6472155, rs2980003) in the CYP7B1 gene were successfully detected in our study. The information of each SNP was presented in Table 2. The MAF for rs62519827, rs62519841, rs10808739, and rs13276608 were lower than 0.05, these polymorphisms were deleted in the current study. SNPs including rs7836768, rs6472155, and rs2980003 in the control followed HWE (p > 0.05). We investigated the relationship of CYP7B1 genetic variants and the risk of CHD under five genetic models, and our result showed that there are no significant associations (Table 3).
Table 2
Allele frequencies among CYP7B1 SNPs
SNP ID
|
Chromosome position
|
Alleles
(minor/major)
|
MAF
|
O (HET)
|
E (HET)
|
p-HWE
|
Case
|
Control
|
rs7836768
|
chr8: 64474910
|
G/A
|
0.413
|
0.396
|
0.514
|
0.478
|
0.115
|
rs62519827
|
chr8: 64569390
|
C/T
|
0.003
|
0.005
|
0.010
|
0.010
|
1.000
|
rs62519841
|
chr8: 64588948
|
A/G
|
0.005
|
0.005
|
0.010
|
0.010
|
1.000
|
rs10808739
|
chr8: 64727703
|
A/G
|
0.029
|
0.042
|
0.084
|
0.081
|
1.000
|
rs13276608
|
chr8: 64769294
|
T/C
|
0.001
|
0.003
|
0.006
|
0.006
|
1.000
|
rs6472155
|
chr8: 64817650
|
G/A
|
0.286
|
0.264
|
0.422
|
0.388
|
0.067
|
rs2980003
|
chr8: 65087728
|
T/C
|
0.357
|
0.346
|
0.452
|
0.452
|
1.000
|
SNP, Single nucleotide polymorphisms; MAF, Minor allele frequency; HWE, Hardy–Weinberg equilibrium; O (HET), Observed heterozygosity; E (HET), Expected heterozygosity; OR, Odds ratio; 95 % CI, 95% confidence intervals. |
pa values were calculated by exact test. |
Table 3
Association of CYP7B1 polymorphisms with CHD risk
SNP ID
|
Model
|
Allele/Genotype
|
Case N
|
Control N
|
OR (95% CI)
|
p
|
rs7836768
|
Allele
|
A
|
595
|
616
|
1
|
|
|
|
G
|
419
|
404
|
1.07 (0.90–1.28)
|
0.431
|
|
Codominant
|
AG
|
239
|
71
|
0.90 (0.69–1.19)
|
0.464
|
|
|
GG
|
90
|
262
|
1.27 (0.87–1.84)
|
0.220
|
|
|
AA
|
178
|
177
|
1
|
|
|
Dominant
|
AG-GG
|
329
|
333
|
0.98 (0.76–1.27)
|
0.878
|
|
Recessive
|
AA-AG
|
417
|
248
|
1
|
|
|
|
GG
|
90
|
262
|
1.34 (0.96–1.89)
|
0.090
|
|
Log-additive
|
–
|
–
|
–
|
1.08 (0.90–1.29)
|
0.427
|
rs6472155
|
Allele
|
A
|
725
|
751
|
1
|
|
|
|
G
|
291
|
269
|
1.12 (0.92–1.36)
|
0.252
|
|
Codominant
|
AG
|
219
|
215
|
1.08 (0.83–1.39)
|
0.575
|
|
|
GG
|
36
|
27
|
1.39 (0.82–2.35)
|
0.226
|
|
|
AA
|
253
|
268
|
1
|
|
|
Dominant
|
AG-GG
|
255
|
242
|
1.11 (0.87–1.42)
|
0.404
|
|
Recessive
|
AA-AG
|
472
|
483
|
1
|
|
|
|
GG
|
36
|
27
|
1.34 (0.80–2.25)
|
0.265
|
|
Log-additive
|
–
|
–
|
–
|
1.12 (0.92–1.38)
|
0.260
|
rs2980003
|
Allele
|
C
|
653
|
666
|
1
|
|
|
|
T
|
363
|
352
|
1.05 (0.88–1.26)
|
0.587
|
|
Codominant
|
TC
|
233
|
230
|
1.05 (0.81–1.37)
|
0.722
|
|
|
TT
|
65
|
61
|
1.09 (0.73–1.63)
|
0.663
|
|
|
CC
|
210
|
218
|
1
|
|
|
Dominant
|
TC-TT
|
298
|
291
|
1.06 (0.82–1.36)
|
0.657
|
|
Recessive
|
CC-TC
|
443
|
448
|
1
|
|
|
|
TT
|
65
|
61
|
1.07 (0.73–1.55)
|
0.738
|
|
Log-additive
|
–
|
–
|
–
|
1.05 (0.87–1.26)
|
0.626
|
CI, confidence interval; OR, odds ratio; SNP: single nucleotide polymorphism; OR, Odds ratio, 95 % CI; 95% confidence intervals. |
p-values were calculated by unconditional logistic regression analysis with adjustment for age and gender. |
p < 0.05 indicates statistical significance. |
The Association Analyses Stratified By Age And Gender
We then determined the effect of CYP7B1 polymorphisms on the risk of CHD stratified by age and gender. Table 4 showed the associations under age-based stratification. We found that rs6472155 is significantly associated with an increased risk of CHD in age > 60 years (allele model: G vs A, OR 1.43, 95 % CI = 1.10–1.86, p = 0.008; co-dominant model: GG vs AA, OR 2.20, 95 % CI = 1.07–4.49, p = 0.031; log-additive: OR 1.39, 95 % CI = 1.06–1.83, p = 0.018). On gender stratification (Table 5), our data indicated that rs6472155 can increase the susceptibility to CHD in women under allele model (G vs A, OR 1.48, 95 % CI = 1.06–2.07, p = 0.022), co-dominant model (GG vs AA, OR 3.17, 95 % CI = 1.19–8.44, p = 0.021), and recessive model (GG vs AA-AG, OR 2.91, 95 % CI = 1.12–7.58, p = 0.029).
Table 4
Association between CYP7B1 polymorphisms and CHD risk stratified by age
SNP ID
|
Model
|
Genotype
|
Case
|
Control
|
OR (95% CI)
|
p
|
Case
|
Control
|
OR (95% CI)
|
p
|
> 60 years
|
≤ 60 years
|
rs7836768
|
Allele
|
A
|
326
|
342
|
1
|
|
269
|
274
|
1
|
|
|
|
G
|
238
|
226
|
1.11 (0.87–1.40)
|
0.410
|
181
|
178
|
1.04 (0.79–1.35)
|
0.796
|
|
Codominant
|
AG
|
140
|
156
|
0.91 (0.89–1.32)
|
0.624
|
99
|
106
|
0.92 (0.61–1.39)
|
0.693
|
|
|
GG
|
49
|
35
|
1.52 (0.89–2.58)
|
0.123
|
41
|
36
|
1.13 (0.66–1.93)
|
0.669
|
|
|
AA
|
93
|
93
|
1
|
|
85
|
84
|
1
|
|
|
Dominant
|
AG-GG
|
189
|
191
|
1.02 (0.71–1.45)
|
0.920
|
140
|
142
|
0.97 (0.66–1.43)
|
0.890
|
|
Recessive
|
AA-AG
|
233
|
249
|
1
|
|
184
|
190
|
1
|
|
|
|
GG
|
49
|
35
|
1.61 (1.00-2.59)
|
0.052
|
41
|
36
|
1.18 (0.72–1.93)
|
0519
|
|
Log-additive
|
–
|
–
|
–
|
1.15 (0.90–1.48)
|
0.266
|
–
|
–
|
1.03 (0.80–1.34)
|
0.806
|
rs6472155
|
Allele
|
A
|
388
|
431
|
1
|
|
337
|
320
|
1
|
|
|
|
G
|
176
|
137
|
1.43 (1.10–1.86)
|
0.008
|
115
|
132
|
0.83 (0.62–1.11)
|
0.205
|
|
Codominant
|
AG
|
124
|
111
|
1.31 (0.92–1.86)
|
0.130
|
95
|
104
|
0.82 (0.56–1.19)
|
0.293
|
|
|
GG
|
26
|
13
|
2.20 (1.07–4.49)
|
0.031
|
10
|
14
|
0.64 (0.27–1.50)
|
0.300
|
|
|
AA
|
132
|
160
|
1
|
|
121
|
108
|
1
|
|
|
Dominant
|
AG-GG
|
150
|
124
|
1.40 (1.00-1.95)
|
0.048
|
105
|
118
|
0.79 (0.55–1.15)
|
0.222
|
|
Recessive
|
AA-AG
|
256
|
271
|
1
|
|
216
|
212
|
1
|
|
|
|
GG
|
26
|
13
|
1.94 (0.97–3.90)
|
0.062
|
10
|
14
|
0.70 (0.30–1.61)
|
0.403
|
|
Log-additive
|
–
|
–
|
–
|
1.39 (1.06–1.83)
|
0.018
|
–
|
–
|
0.81 (0.59–1.10)
|
0.180
|
rs2980003
|
Allele
|
C
|
350
|
369
|
1
|
|
303
|
297
|
1
|
|
|
|
T
|
214
|
197
|
1.15 (0.90–1.46)
|
0.273
|
149
|
155
|
0.94 (0.72–1.24)
|
0.673
|
|
Codominant
|
TC
|
126
|
137
|
0.97 (0.68–1.39)
|
0.856
|
107
|
93
|
1.20 (0.81–1.77)
|
0.368
|
|
|
TT
|
44
|
30
|
1.52 (0.89–2.61)
|
0.126
|
21
|
31
|
0.70 (0.38–1.31)
|
0.268
|
|
|
CC
|
112
|
116
|
1
|
|
98
|
102
|
1
|
|
|
Dominant
|
TC-TT
|
170
|
167
|
1.07 (0.76–1.50)
|
0.708
|
128
|
124
|
1.08 (0.74–1.56)
|
0.705
|
|
Recessive
|
CC-TC
|
238
|
253
|
1
|
|
205
|
195
|
1
|
|
|
|
TT
|
44
|
30
|
1.55 (0.94–2.57)
|
0.087
|
21
|
31
|
0.64 (0.36–1.16)
|
0.142
|
|
Log-additive
|
–
|
–
|
–
|
1.15 (0.90–1.48)
|
0.261
|
–
|
–
|
0.94 (0.72–1.24)
|
0.574
|
OR, Odds ratio, 95 % CI; 95% confidence intervals. |
p values were calculated by logistic regression adjusted by age and gender. |
p < 0.05 indicates statistical significance. |
Table 5
Association between CYP7B1 polymorphisms and CHD risk stratified by gender
SNP ID
|
Model
|
Genotype
|
Case
|
Control
|
OR (95% CI)
|
p
|
Case
|
Control
|
OR (95% CI)
|
p
|
Women
|
Men
|
rs7836768
|
Allele
|
A
|
205
|
223
|
1
|
|
390
|
393
|
1
|
|
|
|
G
|
141
|
125
|
1.23 (0.90–1.67)
|
0.191
|
278
|
279
|
1.00 (0.81–1.25)
|
0.971
|
|
Codominant
|
AG
|
89
|
95
|
1.00 (0.63–1.59)
|
0.989
|
150
|
167
|
/
|
/
|
|
|
GG
|
26
|
15
|
1.87 (0.90–3.89)
|
0.096
|
64
|
56
|
1.08 (0.69–1.68)
|
0.734
|
|
|
AA
|
58
|
64
|
1
|
|
120
|
113
|
1
|
|
|
Dominant
|
AG-GG
|
115
|
110
|
1.12 (0.72–1.75)
|
0.616
|
214
|
223
|
0.90 (0.66–1.24)
|
0.537
|
|
Recessive
|
AA-AG
|
147
|
159
|
1
|
|
270
|
280
|
1
|
|
|
|
GG
|
26
|
15
|
1.86 (0.94–3.67)
|
0.073
|
64
|
56
|
1.19 (0.80–1.77)
|
0.392
|
|
Log-additive
|
–
|
–
|
–
|
1.24 (0.89–1.73)
|
0.201
|
–
|
–
|
1.01 (0.81–1.25)
|
0.961
|
rs6472155
|
Allele
|
A
|
239
|
266
|
1
|
|
486
|
485
|
1
|
|
|
|
G
|
109
|
82
|
1.48 (1.06–2.07)
|
0.022
|
182
|
187
|
0.97 (0.76–1.23)
|
0.812
|
|
Codominant
|
AG
|
73
|
70
|
1.21 (0.78–1.89)
|
0.393
|
146
|
145
|
/
|
/
|
|
|
GG
|
18
|
6
|
3.17 (1.19–8.44)
|
0.021
|
18
|
21
|
1.37 (0.83–2.26)
|
0.652
|
|
|
AA
|
83
|
98
|
1
|
|
170
|
170
|
1
|
|
|
Dominant
|
AG-GG
|
91
|
76
|
1.37 (0.89–2.10)
|
0.148
|
164
|
166
|
0.99 (0.73–1.34)
|
0.937
|
|
Recessive
|
AA-AG
|
156
|
168
|
1
|
|
316
|
315
|
1
|
|
|
|
GG
|
18
|
6
|
2.91 (1.12–7.58)
|
0.029
|
18
|
21
|
0.86 (0.45–1.64)
|
0.637
|
|
Log-additive
|
–
|
–
|
–
|
1.45 (1.02–2.06)
|
0.037
|
–
|
–
|
0.97 (0.75–1.25)
|
0.803
|
rs2980003
|
Allele
|
C
|
225
|
215
|
1
|
|
428
|
451
|
1
|
|
|
|
T
|
123
|
133
|
0.88 (0.65–1.20)
|
0.432
|
240
|
219
|
1.16 (0.92–1.45)
|
0.212
|
|
Codominant
|
TC
|
81
|
81
|
0.92 (0.58–1.46)
|
0.732
|
152
|
149
|
/
|
/
|
|
|
TT
|
21
|
26
|
0.73 (0.37–1.43)
|
0.362
|
44
|
35
|
1.37 (0.83–2.26)
|
0.220
|
|
|
CC
|
72
|
67
|
1
|
|
138
|
151
|
1
|
|
|
Dominant
|
TC-TT
|
102
|
107
|
0.88 (0.57–1.35)
|
0.551
|
196
|
184
|
1.16 (0.86–1.58)
|
0.334
|
|
Recessive
|
CC-TC
|
153
|
148
|
1
|
|
290
|
300
|
1
|
|
|
|
TT
|
21
|
26
|
0.76 (0.41–1.43)
|
0.398
|
44
|
35
|
1.29 (0.81–2.08)
|
0.286
|
|
Log-additive
|
–
|
–
|
–
|
0.87 (0.64–1.19)
|
0.394
|
–
|
–
|
1.15 (0.92–1.45)
|
0.220
|
OR, Odds ratio, 95 % CI; 95% confidence intervals. |
p values were calculated by logistic regression adjusted by age and gender. |
p < 0.05 indicates statistical significance. |
CYP7B1 polymorphisms related to CHD susceptibility under smoking, drinking, and diabetes status subgroups
We also detected the associations stratified by smoking, drinking, and diabetes status. As was shown in Table 6, rs2980003 polymorphism has a lower risk of CHD in drinkers under allele model (T vs C, OR 0.57, 95 % CI = 0.35–0.95, p = 0.031), co-dominant model (TC vs CC, OR 0.48, 95 % CI = 0.23–0.97, p = 0.042), dominant model (TC-TT vs CC, OR 0.47, 95 % CI = 0.24–0.91, p = 0.025), and log-additive model (OR 0.59, 95 % CI = 0.36–0.98, p = 0.041). In non-drinkers, we observed that rs6472155 significantly increased a risk of CHD (co-dominant model: GG vs AA, OR 3.16, 95 % CI = 1.05–9.48, p = 0.040; log-additive model: OR 3.43, 95 % CI = 1.16–10.09, p = 0.025). We further evaluated the relationship of polymorphisms with and without diabetes in CHD patients, no significant association were found (Table 7).
Table 6
CYP7B1 polymorphisms related to CHD risk stratified by smoking and drinking status
SNP ID
|
Model
|
Genotype
|
Smoking
|
Non-smoking
|
Drinking
|
Non-drinking
|
OR (95% CI)
|
p
|
OR (95% CI)
|
p
|
OR (95% CI)
|
p
|
OR (95% CI)
|
p
|
rs7836768
|
Allele
|
A
|
1
|
|
1
|
|
1
|
|
1
|
|
|
|
G
|
0.89 (0.65–1.23)
|
0.485
|
1.19 (0.87–1.61)
|
0.275
|
1.07 (0.68–1.71)
|
0.763
|
1.25 (0.93–1.68)
|
0.139
|
|
Codominant
|
AG
|
0.84 (0.50–1.40)
|
0.495
|
0.96 (0.60–1.54)
|
0.881
|
0.65 (0.31–1.36)
|
0.250
|
1.18 (0.75–1.85)
|
0.465
|
|
|
GG
|
0.83 (0.45–1.56)
|
0.565
|
1.51 (0.76–2.99)
|
0.236
|
1.31 (0.54–3.16)
|
0.546
|
1.71 (0.88–3.29)
|
0.111
|
|
|
AA
|
1
|
|
1
|
|
1
|
|
1
|
|
|
Dominant
|
AG-GG
|
0.84 (0.52–1.35)
|
0.461
|
1.07 (0.68–1.66)
|
0.781
|
0.81 (0.41–1.60)
|
0.550
|
1.29 (0.84–1.98)
|
0.247
|
|
Recessive
|
AA-AG
|
1
|
|
1
|
|
1
|
|
1
|
|
|
|
GG
|
0.92 (0.53–1.60)
|
0.774
|
1.07 (0.68–1.66)
|
0.781
|
1.66 (0.75–3.66)
|
0.209
|
1.55 (0.85–2.84)
|
0.156
|
|
Log-additive
|
–
|
0.90 (0.67–1.23)
|
0.522
|
1.16 (0.84–1.59)
|
0.370
|
1.07 (0.68–1.68)
|
0.769
|
1.27 (0.94–1.73)
|
0.119
|
rs6472155
|
Allele
|
A
|
1
|
|
1
|
|
1
|
|
1
|
|
|
|
G
|
0.83 (0.59–1.18)
|
0.294
|
1.27 (0.90–1.77)
|
0.171
|
0.99 (0.59–1.66)
|
0.961
|
1.15 (0.83–1.59)
|
0.387
|
|
Codominant
|
AG
|
0.92 (0.57–1.47)
|
0.724
|
0.93 (0.59–1.44)
|
0.735
|
1.36 (0.70–2.64)
|
0.371
|
0.84 (0.56–1.29)
|
0.425
|
|
|
GG
|
0.55 (0.23–1.31)
|
0.175
|
2.68 (0.93–7.71)
|
0.068
|
0.26 (0.03–2.21)
|
0.220
|
3.16 (1.05–9.48)
|
0.040
|
|
|
AA
|
1
|
|
1
|
|
1
|
|
1
|
|
|
Dominant
|
AG-GG
|
0.85 (0.54–1.33)
|
0.481
|
1.05 (0.68–1.60)
|
0.841
|
1.18 (0.61–2.26)
|
0.625
|
0.98 (0.65–1.47)
|
0.907
|
|
Recessive
|
AA-AG
|
1
|
|
1
|
|
1
|
|
1
|
|
|
|
GG
|
0.57 (0.25–1.32)
|
0.190
|
2.77 (0.98–7.83)
|
0.055
|
0.23 (0.03–1.18)
|
0.170
|
3.43 (1.16–10.09)
|
0.025
|
|
Log-additive
|
–
|
0.82 (0.57–1.17)
|
0.268
|
1.19 (0.83–1.69)
|
0.346
|
0.95 (0.55–1.64)
|
0.863
|
1.16 (0.83–1.63)
|
0.376
|
rs2980003
|
Allele
|
C
|
1
|
|
1
|
|
1
|
|
1
|
|
|
|
T
|
0.97 (0.70–1.36)
|
0.879
|
1.04 (0.77–1.41)
|
0.795
|
0.57 (0.35–0.95)
|
0.031
|
0.96 (0.72–1.30)
|
0.810
|
|
Codominant
|
TC
|
1.07 (0.66–1.72)
|
0.790
|
1.06 (0.67–1.69)
|
0.805
|
0.48 (0.23–0.97)
|
0.042
|
0.98 (0.63–1.53)
|
0.927
|
|
|
TT
|
0.86 (0.41–1.79)
|
0.682
|
1.03 (0.54–1.96)
|
0.928
|
0.44 (0.15–1.32)
|
0.143
|
0.93 (0.49–1.53)
|
0.833
|
|
|
CC
|
1
|
|
1
|
|
1
|
|
1
|
|
|
Dominant
|
TC-TT
|
1.02 (0.65–1.60)
|
0.933
|
1.05 (0.68–1.63)
|
0.818
|
0.47 (0.24–0.91)
|
0.025
|
0.97 (0.64–1.48)
|
0.882
|
|
Recessive
|
CC-TC
|
1
|
|
1
|
|
1
|
|
1
|
|
|
|
TT
|
0.83 (0.41–1.68)
|
0.603
|
1.00 (0.55–1.81)
|
0.995
|
0.61 (0.21–1.75)
|
0.359
|
0.94 (0.52–1.71)
|
0.849
|
|
Log-additive
|
–
|
0.97 (0.69–1.36)
|
0.857
|
1.03 (0.75–1.39)
|
0.875
|
0.59 (0.36–0.98)
|
0.041
|
0.97 (0.72–1.31)
|
0.840
|
OR, Odds ratio, 95 % CI; 95% confidence intervals. |
p values were calculated by logistic regression adjusted by age and gender. |
p < 0.05 indicates statistical significance. |
Table 7
Association of CYP7B1 polymorphisms in CHD patients with and without diabetes
SNP ID
|
Model
|
Genotype
|
With diabetes
|
Without diabetes
|
OR (95% CI)
|
p
|
rs7836768
|
Allele
|
A
|
185
|
410
|
1
|
|
|
|
G
|
105
|
314
|
0.74 (0.56–0.98)
|
0.036
|
|
Codominant
|
AG
|
65
|
174
|
0.73 (0.48–1.12)
|
0.153
|
|
|
GG
|
20
|
70
|
0.56 (0.31–1.02)
|
0.057
|
|
|
AA
|
60
|
118
|
1
|
|
|
Dominant
|
AG-GG
|
85
|
244
|
0.69 (0.46–1.02)
|
0.063
|
|
Recessive
|
AA-AG
|
125
|
292
|
1
|
|
|
|
GG
|
20
|
70
|
0.67 (0.39–1.15)
|
0.147
|
|
Log-additive
|
–
|
–
|
–
|
0.75 (0.57–0.99)
|
0.042
|
rs6472155
|
Allele
|
A
|
214
|
511
|
1
|
|
|
|
G
|
78
|
213
|
0.87 (0.64–1.19)
|
0.388
|
|
Codominant
|
AG
|
54
|
165
|
0.77 (0.51–1.17)
|
0.226
|
|
|
GG
|
12
|
24
|
1.02 (0.56–1.86)
|
0.949
|
|
|
AA
|
80
|
173
|
1
|
|
|
Dominant
|
AG-GG
|
66
|
189
|
0.73 (0.50–1.08)
|
0.118
|
|
Recessive
|
AA-AG
|
134
|
338
|
1
|
|
|
|
GG
|
12
|
24
|
1.16 (0.56–2.42)
|
0.685
|
|
Log-additive
|
–
|
–
|
–
|
0.84 (0.61–1.15)
|
0.276
|
rs2980003
|
Allele
|
C
|
190
|
463
|
1
|
|
|
|
T
|
102
|
261
|
0.95 (0.72–1.27)
|
0.736
|
|
Codominant
|
TC
|
60
|
173
|
0.77 (0.51–1.17)
|
0.226
|
|
|
TT
|
21
|
44
|
1.02 (0.56–1.86)
|
0.949
|
|
|
CC
|
65
|
145
|
1
|
|
|
Dominant
|
TC-TT
|
81
|
217
|
0.82 (0.56–1.22)
|
0.332
|
|
Recessive
|
CC-TC
|
125
|
318
|
1
|
|
|
|
TT
|
21
|
44
|
1.16 (0.66–2.04)
|
0.600
|
|
Log-additive
|
–
|
–
|
–
|
0.94 (0.70–1.25)
|
0.657
|
OR, Odds ratio, 95 % CI; 95% confidence intervals. |
p values were calculated by logistic regression adjusted by age and gender. |
p < 0.05 indicates statistical significance. |
Effect Of SNP-SNP Interactions On CHD Susceptibility
MDR analyses were performed to determine the influence of SNP-SNP interactions. Our results were summarized in Table 8, the combinations of rs7836768, rs6472155, and rs2980003 are the best three-locus model to predict CHD (testing accuracy = 0.4764, CVC = 10/10, p = 0.002). The two-locus model included rs7836768 and rs6472155 (testing accuracy = 0.5079, CVC = 8/10, p = 0.021). Interestingly, the diagram analysis revealed that rs7836768 and rs10808739 had strong interactions (Fig. 1).
Table 8
The analysis of SNP-SNP interaction models using MDR method
Model
|
Training Bal. Acc.
|
Testing Bal. Acc.
|
CVC
|
OR (95% CI)
|
p
|
rs7836768
|
0.5236
|
0.4931
|
9/10
|
1.19 (0.93–1.52)
|
0.167
|
rs7836768,rs6472155
|
0.5336
|
0.5079
|
8/10
|
1.39 (1.05–1.83)
|
0.021
|
rs7836768,rs6472155,rs2980003
|
0.5454
|
0.4764
|
10/10
|
1.59 (1.19–2.13)
|
0.002
|
Bal. Acc., Balanced accuracy; CVC, Cross-validation consistently. |
p values were calculated by χ2 test. p < 0.05 indicates statistical significance. |
The Association Between SNP Genotypes And Clinical Indicators
Finally, we studied the possible association of SNP with clinical indicators in CHD patients. As was showed in Table 9, the AG genotype (289.796 ± 84.427 umol/l) and GG genotype (296.096 ± 68.438 umol/l) of rs6472155 polymorphism were lower uric acid level than AA genotype (310.364 ± 86.950 umol/l) (p = 0.034).
Table 9
Comparisons between clinical characteristics and SNP genotypes
SNP
|
Urea (mmol/l)
|
Creatinine (umol/l)
|
Uric acid (umol/l)
|
Total-cholesterol (mmol/l)
|
Apolipoprotein AI (g/l)
|
rs7836768
|
|
|
|
|
|
AA
|
5.167 ± 1.422
|
2.350 ± 0.841
|
302.857 ± 82.083
|
4.024 ± 0.999
|
1.185 ± 0.225
|
AG
|
5.210 ± 1.592
|
2.370 ± 0.867
|
297.444 ± 87.826
|
4.066 ± 1.068
|
1.170 ± 0.238
|
GG
|
5.178 ± 1.556
|
2.430 ± 0.785
|
304.943 ± 84.697
|
4.186 ± 1.091
|
1.149 ± 0.255
|
p
|
0.958
|
0.761
|
0.718
|
0.501
|
0.518
|
rs6472155
|
|
|
|
|
|
AA
|
5.209 ± 1.543
|
2.340 ± 0.825
|
310.364 ± 86.950
|
4.039 ± 1.083
|
1.179 ± 0.236
|
AG
|
5.160 ± 1.493
|
2.410 ± 0.888
|
289.796 ± 84.427
|
4.125 ± 1.011
|
1.162 ± 0.230
|
GG
|
5.186 ± 1.615
|
2.420 ± 0.753
|
296.096 ± 68.438
|
4.055 ± 1.045
|
1.165 ± 0.279
|
p
|
0.942
|
0.636
|
0.034
|
0.684
|
0.737
|
rs2980003
|
|
|
|
|
|
TT
|
5.042 ± 1.387
|
2.300 ± 0.909
|
290.025 ± 86.984
|
3.885 ± 1.011
|
1.126 ± 0.223
|
CT
|
5.285 ± 1.599
|
2.370 ± 0.861
|
302.334 ± 81.741
|
4.075 ± 1.082
|
1.176 ± 0.224
|
CC
|
5.117 ± 1.474
|
2.410 ± 0.810
|
301.934 ± 88.426
|
4.142 ± 1.020
|
1.180 ± 0.254
|
p
|
0.384
|
0.639
|
0.569
|
0.239
|
0.261
|
p values were calculated by Kruskal-Wallis H test. |
p < 0.05 indicates statistical significance. |