3.1 Determination of enzyme activity
The effects of EPN-Bt treatment on antioxidant enzymes (SOD, POD, CAT) and detoxifying enzymes (CarE, GST, AchE) in H. parallela larvae are shown in Fig. 1. Within 3 days of treatment with EPN, Bt, or EPN-Bt combination, the activities of these enzymes were all almost enhanced compared with the water control. In addition, the activities of these enzymes reached the peak on the second day after treatment with EPN-Bt combination, and was significantly higher than that of other treatments (SOD: F = 9.11, df = 3, 8, P = 0.006; POD: F = 10.45, df = 3, 8, P = 0.027; CAT: F = 6.186, df = 3, 8, P = 0.018; CarE: F = 12.74, df = 3, 8, P = 0.002; GST: F = 9.39, df = 3, 8, P = 0.049; AchE: F = 50.91, df = 3, 8, P < 0.001). It was worth noting that the activities of these enzymes were inhibited to varying degrees after treatment with EPN-Bt combination for 4 days.
3.2 Sequence assembly and functional annotation
Eight midgut cDNA libraries of H. parallela larvae exposed to EPN, Bt, EPN-Bt combination and sterile water (CK) at two time-points were sequenced and generated 38,845,132 − 45,527,760 clean raw reads (Table S2). Subsequently, the clean reads from the eight samples were combined to do de novo assembly, resulting in 70,976 Unigenes with a mean length of 771 bp and an N50 of 1,200 bp (Fig. S1a), and 76.5% aligned reads mapped to the clean reads (Fig. S1b). From these Unigenes, a total of 16,016 predicted ORFs was obtained, and the lengths ranged from 297 bp to 2,577 bp, with a mean length of 1,130 and an N50 of 1,557 (Fig. S1c). 27,752 (39.10%) Unigenes were annotated at least in one database, including 5,932 in NT, 27,752 in NR, 10,557 in BLASTP and 15,167 in BLASTX against Uniprot (Fig. S1d).
3.3 Analysis of DEGs and qRT-PCR validation
The DEGs between the EPN-Bt group and Bt groups, EPN groups as well as the CK group were identified using DEseq2. Similar numbers of genes were upregulated or downregulated in (EPN-Bt) 1d-vs-CK 1d comparison, (EPN-Bt) 1d-vs-EPN 1d comparison and (EPN-Bt) 1d-vs-Bt 3d comparison (Fig. 2a). The majority of DEGs (82.58%, 4,428 genes) were downregulated in the (EPN-Bt) 3d-vs-CK 3d comparison, while vast DEGs (61.42%, 2,124 genes) were upregulated in the (EPN-Bt) 3d-vs-EPN 3d comparison. Venn diagrams showed that the co-expressed DEGs for the three groups of (EPN-Bt) 1d-vs-CK 1d/EPN 1d/Bt 3d were 4,263 (15.53%, 662 upregulated and 62.28%, 2,655 downregulated) (Fig. 2b). After treatment with EPN-Bt combination for 3 days, the co-expressed DEGs for the groups of (EPN-Bt) 3d-vs-CK 3d/EPN 3d/Bt 5d were significant reduced, only 1,312 (23.32%, 306 upregulated and 61.28%, 804 downregulated) (Fig. 2c).
Some antioxidants and detoxifying genes were regulated, indicating that they were involved in protecting H. parallela larvae against EPN and Bt infection. The annotations of these genes in transcriptome data are summarized in Table 1. To confirm the reliability of RNA-seq, these eight antioxidant and detoxifying enzyme genes from the (EPN-Bt) 1d-vs-EPN 1d comparison were selected for qRT-PCR validation. The volcano plot for the (EPN-Bt) 1d-vs-EPN 1d comparison is shown in Fig. 2d. The expression levels of the selected eight genes in the (EPN-Bt) 1d group were normalized to the EPN 1d group. The qRT-PCR data showed a positive linear relationship with the RNA-seq (R2 = 0.8429, P = 0.0013 at 95% confidence interval) (Fig. 2e).
Table 1
The annotations of genes related to antioxidant and detoxification
Unigene ID
|
Description
|
Log2Fold Change
|
(EPN-Bt) 1d-vs-
|
(EPN-Bt) 3d-vs-
|
CK 1d
|
Bt 3d
|
EPN 1d
|
CK 3d
|
Bt 5d
|
EPN 3d
|
TRINITY_DN14704_c0_g1
|
Superoxide dismutase (SOD)
|
2.88
|
=
|
4.32
|
2.25
|
=
|
8.30
|
TRINITY_DN18932_c2_g1
|
Peroxidase (POD)
|
10.39
|
5.73
|
11.60
|
6.30
|
=
|
=
|
TRINITY_DN9842_c0_g1
|
Catalase (CAT)
|
1.85
|
=
|
2.01
|
1.64
|
=
|
=
|
TRINITY_DN17760_c6_g1
|
Acetylcholinesterase (AchE)
|
-2.94
|
=
|
1.21
|
-1.59
|
2.56
|
=
|
TRINITY_DN8208_c0_g1
|
Cytochrome P-450 (P-450)
|
8.64
|
10.57
|
11.83
|
1.89
|
8.04
|
=
|
TRINITY_DN16841_c1_g1
|
Carboxylesterase (CarE)
|
4.11
|
=
|
4.74
|
-2.55
|
=
|
=
|
TRINITY_DN10439_c1_g1
|
Glutathione S-transferase 1 (GST1)
|
1.54
|
=
|
4.10
|
1.05
|
=
|
2.37
|
TRINITY_DN14506_c0_g4
|
Glutathione S-transferase 2 (GST2)
|
4.40
|
=
|
3.47
|
4.99
|
4.14
|
=
|
3.4 GO analysis and KEGG pathways
To explore the potential functions of these DEGs, GO terms were used to classify the functions of the H. parallela DEGs. (Fig. S2). In this case, the totals of 5,817, 5,698, 5,679, 6,440, 6,528 and 6,369 DEGs respectively for the comparisons of the (EPN-Bt) 1d-vs-CK 1d, (EPN-Bt) 1d-vs-EPN 1d, (EPN-Bt) 1d-vs-Bt 3d, (EPN-Bt) 3d-vs-CK 3d, (EPN-Bt) 3d-vs-EPN 3d and (EPN-Bt) 3d-vs-Bt 5d were annotated in 56 GO terms. Genes related to cell parts, cellular process, binding and metabolic process were dominant. The top ten most significantly enriched pathways for each comparison are shown in Table S3. The enriched pathways were almost consistent and mainly included the lysine degradation, huntington disease, signalling pathways regulating pluripotency of stem cells.
3.5 Spatiotemporal analysis of antioxidant and detoxifying enzyme genes
To better understand the functions of these eight antioxidant and detoxifying enzyme genes, their relative expressions in different developmental stages and tissues were further determine by qRT-PCR (Fig. 3). These eight antioxidant and detoxifying enzyme genes ubiquitously expressed in all stages and tissues. Stage distribution analysis showed that SOD, CAT, AchE, P-450, CarE and GST1 were mainly expressed in the second instar larvae (SOD: F = 11.05, df = 3, 8, P = 0.003; CAT: F = 10.15, df = 3, 8, P = 0.004; AchE: F = 18.02, df = 3, 8, P < 0.001; P-450: F = 15.57, df = 3, 8, P = 0.001; CarE: F = 11.38, df = 3, 8, P = 0.003; GST1: F = 23.14, df = 3, 8, P < 0.001), while POD and GST2 were dominantly expressed in the third instar larvae (POD: F = 5.96, df = 3, 8, P = 0.019; GST2: F = 100.23, df = 3, 8, P < 0.001) (Fig. 3a). Tissue distribution analysis showed that SOD, CAT, P-450, CarE and GST2 possessed the higher abundance in the midgut (SOD: F = 4.15, df = 3, 8, P = 0.048; CAT: F = 24.90, df = 3, 8, P < 0.001; P-450: F = 46.18, df = 3, 8, P < 0.001; CarE: F = 64.58, df = 3, 8, P < 0.001; GST2: F = 17.74, df = 3, 8, P = 0.001), while POD possessed the higher abundance in hemolymph (F = 10.82, df = 3, 8, P = 0.001), AchE in malpighian tube (F = 43.32, df = 3, 8, P < 0.001), GST1 in the fat body (F = 5.50, df = 3, 8, P = 0.024) (Fig. 3b).
3.6 RNAi, and enzyme activity and susceptibility changes after RNAi
Double-stranded RNA of CAT, CarE, and GST1 was injected into the hemocoel of H. parallela second instar larvae, respectively. The RNAi efficiency at 24, 48, and 72 h after injection was determined by qRT-PCR (Fig. S3; Fig. 4a). The results revealed that the significant knockdown was achieved at 24 h after dsRNA injection, and the knockdown efficiency could maintain for at least 72 h (Fig. S3). The expression difference between the control groups (dsGFP-injected and water-injected, P > 0.05) was not significant after injecting the corresponding dsRNA for 24 hours (Fig. 4A). In addition, the expression of CAT, CarE, and GST1 was significantly depressed by 99.17%, 93.06%, and 96.81%, respectively, compared with water injection (P < 0.001).
Twenty-four hours after the corresponding dsRNA injection, the enzyme activities of CAT, CarE, and GST were significantly depressed by 30.29%, 68.80%, and 34.63%, respectively, compared to the water-injected grubs (P < 0.01), and no significant difference was detected between the two controls (P > 0.05) (Fig. 4b). The larval susceptibility was subsequently investigated after silencing CAT, CarE, and GST1, respectively (Fig. 4c). Twenty-four hours after injection, the grubs were exposed to EPN for 1 day, Bt for 3 days, and EPN-Bt combination for 1 day incorporated diets. While dsGFP did not show significant differences to water control (P > 0.05), the grubs injected with dsRNA exhibited higher mortality than the water control. Silencing of CarE resulted in a significant increase in grub mortality. The mortality was increased by 21.41% (EPN 1d, P < 0.05), 20.37% (Bt 3d, P < 0.05), and 46.30% (EPN-Bt 1d, P < 0.01), respectively, compared with water control. In addition, silencing of GST1 also significantly increased grub mortality by 42.59% (EPN-Bt 1d, P < 0.01).
3.7 PI3K/Akt/CncC signalling pathway regulates the expression of CarE
The annotations of PI3K, Akt, CncC, and Keap1 are summarized in Table S4. Through sequence alignment and phylogenetic tree analysis, the key genes of PI3K/Akt and CncC/Keap1 pathway of H. parallela were successfully identified (Fig. S4). The relative expression of PI3K, Akt, CncC, Keap1, and CarE at the mRNA level was significantly upregulated by 170.67%, 21.77%, 367.15%, 262.85%, and 85.66% (P < 0.05), respectively, after exposure to EPN-Bt combination for 1 day compared to the water-injected control group (Fig. 5a). However, the relative expression of these genes was significantly downregulated by 92.32%, 87.08%, 96.25%, 56.93%, and 52.01% (P < 0.05), respectively, after exposure for 3 days (Fig. 5b). Twenty-four hours after dsPI3K injection, the relative expression of PI3K was significantly depressed by 60.25% compared with water control (P < 0.05) (Fig. S5). Meanwhile, Akt, CncC, and CarE at the mRNA level were significantly downregulated by 87.08%, 36.18%, and 42.65% (P < 0.05), respectively. Besides, dsPI3K injection had no significant effect on Keap1 expression (P > 0.05) (Fig. 5c). In addition, the activity of CarE was significantly depressed by 46.18% in comparison to the water-injected grubs after silencing of PI3K for 24 h (P < 0.05) (Fig. 5d).
3.8 PI3K silencing affects H. parallela larvae survival and symbiotic bacteria multiplication
Results showed that silencing of PI3K rendered grubs more susceptible to EPN, Bt, and EPN-Bt combination than water-injected control, and there was no significant difference between the two control groups (dsGFP-injected and water-injected, P > 0.05) (Fig. 6a). Furthermore, silencing of PI3K resulted in a significant increase in the number of symbiotic bacteria in the hemolymph of grubs when subjected to EPN and EPN-Bt combination for 1 day (Fig. 6b). The number of symbiotic bacteria between the two control groups (dsGFP-injected and water-injected) was not significant (P > 0.05).