2.1 Source of clinical specimens
From the month of Jan. 2021 to Jun. 2021, six pairs of the urethral scar and normal urethral tissue were collected in Xiangya Hospital Central South University. Informed consent was obtained from all subjects and their legal guardians.Patients’ baseline information was summarized in Table 1. Before the operation, the materials were local without infection and ulcer and were not treated with drugs or radiotherapy. All specimens were obtained with the consent of patients and their families before operation and confirmed by pathological examination. The procedure used in this research followed the tenets of the Declaration of Helsinki and was approved by Medical Ethics Committee of Xiangya Hospital Central South University.
Table 1
Patient demographics in this study.
Number of subject | Age | Gender | Etiology |
1 | 61 | male | trauma |
2 | 56 | male | trauma |
3 | 71 | male | iatrogenic |
4 | 43 | male | trauma |
5 | 48 | male | trauma |
6 | 52 | male | trauma |
2.2 CircRNA microarray analysis
The circRNA expression profile of the urethral scar and normal urethral tissue was detected using CapitalBio Technology Human CircRNA Array v2 (CapitalBio Technology, China). The total RNA of three urethral scar tissue and three normal urethral tissue were extracted. The purity and concentration of the RNA were determined by a NanoDrop ND-1000 instrument (Thermo Scientific, USA). The extracted RNAs were amplified and reverse transcription into cDNA, then labeled with Cy3-dCTP. After purification, the labeled DNAs were hybridized to a microarray (CapitalBio Technology Human CircRNA Array v2). The circRNAs expression difference and statistical significance P value were calculated by GeneSpring GX software. Cluster analysis and graphical display with Cluster3.0 software. According to the grouping information, the differential comparison is conducted to obtain differential genes. Kyoto encyclopedia of genes and genomes (KEGG) Pathway analysis was performed on the linear mRNA transcripts corresponding to different circRNA, and the miRNA that circRNA might bind to was predicted.
2.3 Primary cell extraction and culture
The urethral scar tissue or normal urethral tissue was repeatedly rinsed in PBS containing antibiotics to remove redundant epithelial tissue. The tissues were divided into small pieces of 5 mm×5 mm in size and dropped the culture medium was onto the tissue to keep it moist. The tissues were put into a centrifuge tube, added 0.25% trypsin digestive juice -EDTA and collagenase, digested in a constant temperature water bath at 37℃ for 4 ~ 5 hours, and shaken once every hour. Filter the suspension with a filter screen, take the filtered suspension for centrifugation, discard the supernatant, add 6 mL of fresh culture solution, and culture in a cell incubator at 37℃ and 5% CO2. The next day, most of the fibroblasts adhered to the wall, the cell culture medium was changed, and the cells were changed every 2 ~ 3 days. Finally, urethral scar fibroblasts and normal urethral fibroblasts were successfully separated and cultured. The α-smooth muscle actin (α-SMA) was selected as a marker of fibroblasts for detection.
2.4 Cell transfection
The small interference RNA (siRNA) specifically targeting circ_0047339 (si-circ_0047339), Lentivirus harboring circ_0047339 (LV-circ_0047339), miR-4691-5p mimic and their corresponding negative controls (si-NC, vector, mimic NC) were obtained from honorgene Company (Changsha, China). According to the manufacturer's protocol, cells were transfected with Lipofectamine 3000 reagent (ThermoFisher, USA)[24].
2.5 Western blot
Total protein was extracted from the collected cells by RIPA lysate (AWB0136, Abiowell) containing protease inhibitor (583794, Jintai Hongda, Beijing, China) and protein phosphatase inhibitor (AWH0650, Abiowell). Then, the protein was transferred to the NC membrane after 10% SDS-PAGE treatment. The membrane was sealed with 5% skim milk (AWB0004, Abiowell) at room temperature for 2 hours. collagen I (COL-1, 1: 10000, 67288-1-Ig, proteintech), α-SMA (1: 6000, 14395-1-AP, proteintech), TSP-1 (1: 1000, 18304-1-AP, proteintech), β-actin (1: 5000, 66009-1-Ig, proteintech) were added. Then, the corresponding secondary antibodies HRP goat anti-mouse IgG (1: 5000, SA00001-1, proteintech) or HRP goat anti-rabbit IgG (1: 6000, SA00001-2, proteintech) were incubated with the membrane at room temperature for 2 hours. The membrane was incubated with SuperECL Plus (AWB0005, abiowell), and then the protein bands were visualized by Chemiluminescence imaging system (Chemiscope 6100, Clinx, China). The relative content of protein is expressed as target protein / β-actin.
2.6 Quantitative reverse transcription PCR (RT-qPCR)
Trizol kit (15596026, Thermo) was adopted to extract the total RNA of cells, and RNA was reverse transcribed into cDNA by reverse transcription kit (CW2569, CW2141, Beijing Kangwei Century). RT-qPCR was carried out under the following reaction conditions using UltraSYBR Mixture (CW2601, Beijing Kangwei Century), cDNA and primers. 95°C 10min, 95°C 15 s, 60℃ 30 s, 40 cycles. GAPDH is the internal control of genes, and U6 is the internal control of miRNAs. The formula is 2−ΔΔCt. The primers used in this study are Table 2.
Table 2
Gene | Sequences (5'-3') |
hsa_circ_0005413 | forward: GGACCTCTTTCAATGACAACGC |
| reverse: CCATCTGTTGCCAAACCACT |
hsa_circ_0006912 | forward: AGCCTACTGCAAATCCAAACAC |
| reverse: CAGGTTTCTTGCCTCTTGGTT |
hsa_circ_0019957 | forward: AAAACATGCCCCAGAGTCCT |
| reverse: ACACTTGCCGATCGACTCCC |
hsa_circ_0021726 | forward: GGACCTCTTTCAATGACAACGC |
| reverse: CATCATCAATGCCTGATCCAGA |
hsa_circ_0021731 | forward: TTCAACCCAATCTCACACCCC |
| reverse: GGTGCCATTTCTGTCTACATGC |
hsa_circ_0047338 | forward: TTATCCCAGTTCCTGATGGCT |
| reverse: TCCCACTCCAGAGATTCGGTA |
hsa_circ_0047339 | forward: CCATGAGAACAAGGCATTCCAC |
| reverse: CTCCCGGTCGACTATAGCTG |
hsa_circ_0047343 | forward: TAACAGCCAATGGAGCCGAT |
| reverse: TGTTCTAGCGGAGACAACCAC |
hsa_circ_0093740 | forward: CACTTATCAAGCTGCCATACCTG |
| reverse: GGTCCTCCAGCAGTCCCTT |
TSP-1 | forward: AAACACTGAAGCACACGCAAC |
| reverse: GACAGCTCCTCCCTCATCCAC |
hsa-let-7b-5p | forward: ACAGCAGGCACAGACAGGCAGT |
| reverse: GCTGTCAACGATACGCTACGTAA |
hsa-miR-4691-5p | forward: ACAGCAGGCACAGACAGGCAGT |
| reverse: GCTGTCAACGATACGCTACGTAA |
hsa-miR-550b-2-5p | forward: ACAGCAGGCACAGACAGGCAGT |
| reverse: GCTGTCAACGATACGCTACGTAA |
hsa-miR-766-5p | forward: ACAGCAGGCACAGACAGGCAGT |
| reverse: GCTGTCAACGATACGCTACGTAA |
GAPDH | forward: ACAGCCTCAAGATCATCAGC |
| reverse: GGTCATGAGTCCTTCCACGAT |
U6 | forward: CTCGCTTCGGCAGCACA |
| reverse: AACGCTTCACGAATTTGCGT |
2.7 Immunofluorescence (IF) analysis
COL-1 and α-SMA expressions were measured by IF analysis. Simply put, the cell slides were fixed with 4% paraformaldehyde for 30 minutes, washed with PBS 3 times and blocked with 5% BSA at 37°C for 60 minutes. The slides were incubated with the first antibody (COL-1 (1: 50, 67288-1-IG, proteintech), α-SMA (1: 50, AB7817, abcam)) at 4℃ overnight. Then, the CoraLite594-conjugated Goat Anti-Mouse IgG (H + L) ( 1:200SA00013-3, proteintech) antibody was incubated with the slides at 37℃ for 90 min. DAPI working solution was stained at 37℃ for 10 min. The results were observed under a microscope (BA210T, Motic).
2.8 Cell Counting Kit-8 (CCK-8) assay
According to the manufacturer's instructions, the CCK-8 kit (NU679, DOJINDO) was used to detect cell viability. The cells were inoculated into a 96-well plate (1× 104/well) and attached to the wall in a 5% CO2 incubator at 37℃ for 24 hours. According to the demand, the cells were divided into groups. Each group was provided with 6 compound holes 24 hours after taking out the 96-well plate, observing it under a microscope, adding CCK-8 reagent and incubating for 2 hours. A microplate analyzer was utilized to detect the absorbance (OD) value at 450 nm, and the results were recorded.
2.9 5-Ethynyl-2′-deoxyuridine (EDU) assay
According to the manufacturer's instructions, cell proliferation was caught by the EDU assay kit (Guangzhou RiboBio). The cells were inoculated into 96-well plates (1×104/ well) and incubated with 4% paraformaldehyde at room temperature for 30 minutes. Then, the cells were treated with 100 µL of 1 × Apollo® staining reaction solution for 30 min. Next, 100 µL Hoechst 33342 reaction solution was added to each well and incubated for 30 minutes. Immediately after dyeing, we used a microscope (DSZ2000X, Beijing Cnmicro instrumentco., Ltd) to observe and take pictures.
2.10 Dual-luciferase reporter assay
According to the manufacturer's instructions, circ_0047339 wide type (WT) or circ_0047339 mutant (MUT) or TSP-1-3' UTR WT or TSP-1-3' UTR MUT, and miR-4691-5p mimic or NC mimic were co-transfected in 293A cells (HonorGene, Changsha) with Lipofectamine 300 transfection reagent (Invitrogen). The cells were digested with trypsin, centrifuged and discarded the supernatant. The luciferase activity was measured using a Dual-luciferase assay kit (E1910, Promega, USA).
2.11 Statistics
Statistical analyses were conducted using GraphPad Prism 9 software (GraphPad Software, Inc., USA). Each experiment was conducted at least three times. Statistical analysis among more than two groups and between two groups was performed using ANOVA and Student's t-test. Data are presented as means ± standard deviations. P-value < 0.05 was considered significant.