Experimental analysis of the differential expression of miRs in glioma cell lines cultured under hypoxic and normoxic conditions.
Hypoxia is an important prognostic contributor for short-term survival in glioma patients[34, 35]. High-throughput whole-genome miR screening was conducted in U251 glioma cells cultured under hypoxic and normoxic conditions using miR microarray chips to investigate hypoxia-induced differences in miR expression. The expression of numerous miRs was significantly upregulated under hypoxic conditions (Fig. 1A). The microarray analysis revealed 84 significantly differentially expressed miRs. Among the 84 miRs, miR-210, which showed the greatest upregulation, has been confirmed to be a hypoxia marker. MiR-588 was one of the ten most upregulated miRs. In the present study, 8 miRs that were highly upregulated under hypoxic conditions (including miR-1207 and miR-597) were examined, among which miR-588 significantly inhibited glioma invasion and migration. In addition, we used a volcano plot to analyze the microarray data and confirmed that miR-588 was significantly upregulated under hypoxic conditions (Fig. 1B). We then examined the transfection efficiencies of NC, miR-588 mimics and an miR-588 inhibitor using RT-qPCR. The expression of miR-588 was not affected in cells transfected with NC. In contrast, transfection of the mimics significantly increased the expression of miR-588, whereas transfection of the inhibitor markedly inhibited the expression of miR-588. Subsequently, RT-qPCR was employed again to examine the expression of miR-588 in U251 and U87MG cells cultured under the normoxic condition and different durations of hypoxia. The expression of miR-588 was obviously upregulated under hypoxic conditions compared to normoxic conditions (Fig. 1D). Moreover, miR-588 expression peaked in glioma cells cultured under hypoxic conditions for approximately 24 h.
NC, miR-588 mimics and the miR-588 inhibitor were used in the present study. NC was the negative control RNA. Transfection of mimics leads to overexpression of relevant RNAs. MiR inhibitors were synthetic single-stranded RNA molecules that inhibited the functions of the corresponding miRs through irreversible binding[36, 37]. In the present study, a miR inhibitor was used to block miR-588 function. U87MG cells were stably transfected with lentiviral vectors expressing NC, miR-588 mimics and the miR-588 inhibitor. The Cell Counting Kit-8 (CCK8) assay was conducted to observe the effects of these molecules on cell viability. No statistical differences in viability emerged between glioma cells transfected with NC, miR-588 mimics and miR-588 inhibitors. Thus, stably transfection with 80 nM mimics and inhibitors significantly regulated endogenous miR-588 expression without affecting cell viability.
The expression of miR-588 is implicated in invasive, migratory and VM-forming abilities of hypoxic glioma cells.
The glioma cell lines U87MG, U251 as well as A172 were stably transfected with NC, miR-588 mimics and miR-588 inhibitors in the current study to examine whether the upregulation or downregulation of miR-588 regulated the hypoxia-induced migration, invasion as well as VM formation of glioma cells. Scratch assays were performed using the A172 and U251 cell lines to examine the effects of miR-588 on glioma cell migration (Fig. 2A, 2B). Several interesting phenomena were observed in the present study. First, cell migration was obviously increased under hypoxic culture conditions. This result was consistent with our expectation. Second, miR-588 obviously suppressed the migration of glioma cells and substantially antagonized the hypoxia-induced migration. The miR-588 knock down glioma cells displayed a significantly increase in migration, and hypoxic culture further promoted cell migration. Both the level of miR-588 expression and the oxygen level in the incubator regulated the migration of glioma cells. Moreover, miR-588 and oxygen exerted mutual regulatory effects.
Transwell assays were performed using the U87MG and A172 cell lines to further evaluate the effect of miR-588 on the migration and invasion of glioma cells (Fig. 2C-F). U87MG cells displayed significantly increased migration through the polycarbonate membrane compared to A172 cells. After repeated experiments, U87MG cells were fixed and stained after 6 h of cultivation in the Transwell chambers, whereas A172 cells were fixed and stained after 20 h of cultivation. Nevertheless, similar results were obtained using the two cell lines. In comparison with control group, miR-588 significantly suppressed the ability of glioma cells to migrate through the membrane, whereas the miR-588 inhibitor markedly enhanced the migratory capability in glioma cells. In addition, hypoxia also significantly promoted the transmembrane migration of glioma cells. Subsequently, we examined the invasion in glioma cells using chambers coated with Matrigel and obtained results similar to the migration assays. Thus, miR-588 significantly suppressed the invasion and migration in glioma cells and simultaneously antagonized the promotion of invasion and migration by hypoxia. Knockdown of miR-588 significantly enhanced the invasion and migration in glioma cells.
U87MG and A172 cell lines were cultured in Matrigel to examine the development of VM[20, 38]. During the experiment, glioma cells first aggregated and extended protrusions, which were then connected to form tubular structures (i.e., VM). The tubular structures collapsed after a certain period. Based on the results, hypoxia accelerated the rate of VM formation and increased the number of tubular structures formed. In comparison with control group, overexpression of miR-588 obviously inhibited the rate of VM formation and decreased the number of tubular structures. In addition, overexpression of miR-588 antagonized the hypoxia-induced VM formation. In contrast, the miR-588 knockdown cells displayed a remarkable increase in VM formation (Fig. 2G, 2H). VM formation was consistent with invasion and migration of the cells. Moreover, miR-588 significantly inhibited the VM-forming ability of glioma cells.
ROBO1 is a key downstream gene in the mechanism by which miR-588 inhibited the invasion, migration and VM-forming abilities of glioma cells.
The key downstream target genes of miR-588 must be identified to clarify the mechanisms by which miR-588 regulates the invasion, migration and VM-forming abilities of glioma cells. We searched for genes that were downstream of miR-588 and associated with invasion and migration of glioma cells using TargetScan, miRDB and miRBase databases. The candidate genes were verified using RT-qPCR. The ROBO1 gene was identified. The three prime untranslated region (3'-UTR) of the ROBO1 gene contains target sites that directly bind miR-588 (Fig. 3A). ROBO1 is a conserved transmembrane receptor protein that is primarily expressed in the nervous system. An analysis of The Cancer Genome Atlas (TCGA) database demonstrated that ROBO1 expression was obviously elevated in glioma tissue in comparison with normal brain, and patients with glioma expressing a high level of ROBO1 experienced significantly shorter survival (Fig. 3C, 3D). Based on these results, ROBO1 promotes the development of gliomas. After transfection with miR-588 mimics and inhibitors for 48 hours, proteins were extracted from glioma cells and Western blot analysis was performed to examine the inhibitory effect of miR-588 at the protein level. Overexpression of miR-588 reduced ROBO1 levels, whereas knockdown of miR-588 increased the levels of the ROBO1 protein (Fig. 3H). Therefore, miR-588 regulated ROBO1 expression and negatively correlated with ROBO1 expression. Luciferase reporter assay was performed for the validation of association between miR-588 and ROBO1. In comparison with control group, luciferase activity was reduced to approximately 61.3% in cells transfected with miR-588, suggesting that the expression of ROBO1 was directly modulated by miR-588 in glioma cells (Fig. 3B).
Western blots also showed that miR-588 overexpression downregulated the expression of matrix metalloproteinase-2 (MMP2) as well as matrix metalloproteinase-9 (MMP9) in U87MG and A172 cell lines (Fig. 3F, 3G). MMP2 is positively correlated with the invasion and migration of glioma cells, while MMP9 is implicated in cell invasion, migration and VM formation. Therefore, the western blot results partially illustrated the mechanisms by which miR-588 inhibited the invasion, migration and VM-forming abilities of glioma cells. No change in the viability of cells stably transfected with the lentiviruses was detected using the CCK8 assay. The stably transfected U87MG cells were then transfected with a small interfering RNA (siRNA) targeting ROBO1. Following siRNA transfection, cellular proteins were extracted. ROBO1 expression was obviously suppressed in cells transfected with the ROBO1 siRNA in comparison with control group, demonstrating that the efficiency of siRNA-mediated knockdown of ROBO1 expression was satisfactory. In addition, the western blot analysis revealed a simultaneous decrease in MMP2 and MMP9 levels after ROBO1 knockdown. The results demonstrated that reduction of ROBO1 expression inhibited the expression of MMP2 and MMP9, thereby affecting the invasive, migratory and VM-forming abilities of glioma cells. The results partially demonstrated the mechanisms by which miR-588 regulated the invasion, migration and VM formation of gliomas.
The invasive, migratory and VM-forming abilities of glioma cells were decreased after ROBO1 knockdown.
U87MG glioma cells stably transfected with NC, miR-588 mimics or the miR-588 inhibitor were further transfected with the ROBO1 siRNA to verify the effects of ROBO1 on glioma cell invasion, migration and VM. After transfection, the cells were subjected to scratch, Transwell and VM assays. Cells displaying normal ROBO1 expression served as the control group. In comparison with control group, the migration of glioma cells in the scratch assay was significantly reduced after ROBO1 knockdown. Cells stably transfected with miR-588 mimics displayed the lowest migration after ROBO1 knockdown. Cells stably transfected with the miR-588 inhibitor in which ROBO1 expression was knocked down exhibited similar migration to NC-transfected cells, which was obviously suppressed in comparison with the control group without normal ROBO1 expression (Fig. 4A).
The similar findings were observed in the subsequent Transwell assay (Fig. 4B, 4C). Normally, knockdown of ROBO1 expression significantly suppressed the migration of glioma cells. In addition, the results from the invasion assay were in accordance with the findings of migration assay. ROBO1 knockdown also inhibited the invasion of glioma cells. Based on these results, ROBO1 significantly increased the invasion and migration of glioma cells, while ROBO1 knockdown enhanced the ability of miR-588 to inhibit glioma cell invasion and migration. ROBO1 served as a downstream target of miR-588. Moreover, miR-588 exerted its cancer-suppressing effect by inhibiting ROBO1 expression.
A VM formation assay was conducted using glioma cells transfected with the ROBO1 siRNA to clarify the effect of ROBO1 in development of VM in glioma cells. Compared with control group, ROBO1 knockdown cells exhibited a delay in VM formation. In addition, knockdown of ROBO1 expression markedly reduced the number of tubular structures formed (Fig. 4D). Thus, the VM-forming capacity of glioma cells was markedly reduced by ROBO1 knockdown. We concluded that ROBO1 also plays a vital function in the formation of VM structures of glioma cells. The above results in accordance with the findings of invasion and migration assays.
ROBO1 expression in glioma tissues positively correlated with VM formation.
Normal brain tissue specimens and specimens of various grades of glioma tissues (WHO grades II-IV) were collected. Subsequently, ROBO1 immunohistochemistry, CD31 immunohistochemistry and periodic acid–Schiff (PAS) staining were performed to examine the differences in ROBO1 expression and VM formation among various grades of glioma tissues and to determine the potential correlation between ROBO1 expression and VM formation. ROBO1 expression gradually increased as the glioma grade increased (Fig. 5A). At the same time, VM formation increased. Therefore, a positive correlation was identified between ROBO1 expression and VM formation.
Mir-588 Counteracts The Hypoxia-induced Pro-invasive Effects In Vivo
To analyze the impact of miR-588 on hypoxia-induced invasion in vivo, we transplanted lentiviral vector-transfected U87MG cells into the brain of nude mice. We detected and recorded intracranial tumor size by bioluminescence imaging. The results demonstrated that miR-588 knockdown tumors were significantly more aggressive, while miR-588 overexpression strongly reduced the extent of gliomas (Fig. 5B, 5C). Hematoxylin and eosin (HE) staining suggested the extremely aggressive status in association with marked increase in tumor growth of the miR-588 knock down xenografted glioma relative to the NC group (Fig. 5D). Overexpression of miR-588 leads to remarkable inhibition of glioma cell invasion and proliferation. IHC staining demonstrated the negative correlation between the miR-588 and ROBO1 expression. The result revealed that ROBO1 was barely detectable in normal brain, but was potently upregulated in the xenograft tumors with miR-588 knock down (Fig. 5E). Meanwhile, we discovered that MMP2 and MMP9 levels increased in the miR-588 knock down tumors. Therefore, miR-588 deficiency definitely facilitated overall invasive ability of glioma cells in the mouse model. The above results are compatible with the unfavorable prognosis of clinical survival in glioma patients exhibiting low miR-588 levels.