Cell culture. Human colon epithelial cancer cell line Caco-2 were purchased from American Type Culture Collection and maintained in DMEM (Sigma-Aldrich; Merck KGaA) supplemented with 10% FBS (Sigma-Aldrich; Merck KGaA), 1% non-essential amino acids and 1% glutamine. Cells were incubated at 37˚C in a humidified incubator with 5% CO2. Hypoxia was induced by culturing the cells in a modular incubator with an O2 sensor, which allowed the mixing of N2 and air to achieve hypoxic conditions (2% O2 and 5% CO2 balanced with N2) for 12 h. Cells were transferred to normoxia conditions (21% O2 and 5% CO2 balanced with N2) for reoxygenation for 12 h.
II/R mice model. A total of 24 male C57BL/6 mice (age, 6 weeks; weight, 20–22 g; Shanghai Animal Laboratory Center) were maintained at 22 ± 2˚C and 55–60% humidity with 12-h light/dark cycles. Animal experiments were performed in the specific-pathogen-free Animal Laboratory at Renmin Hospital of Wuhan University. All mice were fed adaptively for 1 week with food and water ad libitum. Mice were anesthetized via an intraperitoneal injection of 30 mg/kg pentobarbital. Then, a midline laparotomy was performed. The superior mesenteric artery was identified, separated and clamped. After 45 min of ischemia, the vascular clamp was removed to allow reperfusion. After 0, 4, 8 or 16 h of reperfusion, small intestinal tissues were collected for further evaluation. The mice were divided into the following four groups (n = 6 per group): i) Sham + lentiviral vector (LV)-negative control (NC); ii) sham + LV-anti-miR-129-5p; iii) I/R + LV-NC group; and iv) I/R + LV-anti-miR-129-5p. At the end of reperfusion (4–16 h), a 10-cm segment of the intestine was cut 5 cm away from the ileocecal valve. After the indicated period of reperfusion, mice were sacrificed via cervical dislocation, and the tissue was harvested for further analysis. Filter paper was used to dry the intestinal mucosa, followed by preservation at -80˚C for further analysis.
All animal experiments were performed in accordance with the guidelines described in the Guide for the Care and Use of Laboratory Animals of the National Institutes of Health (24). Animal experiments were approved by Ethics Committee of Renmin Hospital of Wuhan University).
LV infection and plasmid transfection. Lentiviral constructs-empty vector (LV-NC), LV-anti-miR-129-5p and LV-miR-129-5p were obtained from Shanghai GenePharma Co., Ltd. The sequences were as follows: LV-miR-129-5p, 5’-CUUUUUGCGGUCUGGGCUUGC-3’; and LV-anti-miR-129-5p, 5’-GCAAGCCCAGACCGCAAAAAG-3’. Caco-2 cells (2x106/well) were infected with 1x107 lentivirus transducing units with 5 µg/ml polybrene for 24 h at room temperature. After 48 h, cells were harvested for the following study. To stably infect the cells, 2 µg/ml puromycin was added for 3 days. Mice were injected with LV-NC (109 PFU) or LV-anti-miR-129-5p (109 PFU) via the tail vein at 12 h prior to ischemia. For transfection, the SP-D overexpression plasmid pcDNA3.1-SP-D was purchased from Shanghai GenePharma Co., Ltd. Briefly, Caco-2 cells (2x106/well) were seeded into 6-well plates and cultured until they reached 70–80% confluence. Prior to transfection, Lipofectamine® 3000 transfection reagent (Invitrogen; Thermo Fisher Scientific, Inc.), serum-free DMEM and empty pcDNA3.1-NC (1 µg; Shanghai GenePharma Co., Ltd.) or pcDNA3.1-SP-D (1 µg; Shanghai GenePharma Co., Ltd) were mixed and incubated for 30 min at room temperature, and then added to the cells with complete medium containing 10% FBS. After 24 h of transfection at room temperature, cells were harvested for subsequent experiments.
Bioinformatics analysis. starBase (http://starbase.sysu.edu.cn) was used to predict the association between SP-D and miR-129-5p.
Immunofluorescence. Cells were fixed using ice-cold 4% paraformaldehyde for 15 min and then washed with PBS at room temperature. Following fixing, cells were permeabilized using 0.1% Triton X-100 (Sigma-Aldrich; Merck KGaA) at room temperature for 10 min, and blocked using 3% BSA (Sigma-Aldrich; Merck KGaA) for 1 h at room temperature. The cells were incubated with antibodies against zona occludens 1 (ZO-1; cat. no. ab221547) and E-cadherin (cat. no. ab76055) (both 1:200; Abcam) at 4˚C overnight. Subsequently, cells were incubated with the Alexa Fluor 594 secondary antibody (cat. no. ab150080; Abcam) for 1 h at room temperature. DAPI was used to stain the nuclei at room temperature for 15 min. Cells were imaged using a fluorescence microscope (Olympus Corporation; magnification, x200).
Reverse transcription-quantitative PCR. Total RNA from the intestinal tissues and Caco-2 cells was extracted using TRIzol® reagent (Invitrogen; Thermo Fisher Scientific, Inc.). RNA was reverse transcribed using a Transcript All-in-one SuperMix qPCR kit (Beijing TransGen Biotech Co., Ltd.) according to the manufacturer’s protocol, using a reaction volume of 20 µl. SP-D mRNA expression and miR-129-5p expression were quantified using a SYBR Real-time PCR kit (Beijing TransGen Biotech Co., Ltd.). The following thermocycling conditions were used for the qPCR: Initial denaturation at 95˚C for 5 min; followed by 40 cycles at 95˚C for 5 sec and 60˚C for 30 sec, using a total reaction volume of 25 µl. PCR amplification was performed on an ABI Prism 7900 detection system (Applied Biosystems; Thermo Fisher Scientific, Inc). PCR primers were synthesized by Shanghai GenePharma Co., Ltd. and the sequences of the primers used are listed in Table I. GAPDH was used as the reference gene for SP-D mRNA, and U6 was used as the reference gene for miR-129-5p. Relative gene expression was quantified using the 2-ΔΔCq method (25).
Western blotting. Total protein was extracted from cells and small intestinal tissues using RIPA lysis buffer (Beyotime Institute of Biotechnology) supplemented with proteinase inhibitors (Beyotime Institute of Biotechnology). The lysate was centrifuged for 20 min at 12,000 x g at -4˚C, the supernatant was collected. The protein concentration was determined using a BCA assay (Beyotime Institute of Biotechnology). A total of 50 µg protein was loaded per well on a 10% SDS-gel, resolved using SDS-PAGE and transferred to PVDF membranes (Cytiva). The membranes were blocked using skimmed milk at room temperature for 1 h, and subsequently incubated with primary antibodies against SP-D (cat. no. ab220422), ZO-1 (cat. no. ab276131), E-cadherin (cat. no. ab40772) and GAPDH (cat. no. ab9484) (all 1:1,000; Abcam) overnight at 4˚C. The membrane was incubated with horseradish-peroxidase-bound secondary antibodies (all 1:2,000; cat. nos. ab20571 and ab205718; Abcam) for 2 h at room temperature. ECL western blotting substrate (Pierce; Thermo Fisher Scientific, Inc.) was used to visualize the signals. Quantity One software (version 4.6.2, Bio-Rad Laboratories, Inc.) was employed to semi-quantify relative protein expression.
Histopathology and immunohistochemistry (IHC). Lung and liver tissue samples obtained from the II/R mouse model were fixed with 4% paraformaldehyde for 24 h at room temperature, paraffin-embedded and cut into 4-µm sections. After rehydration in a decreasing ethanol series, sections were deparaffinized and stained with Harris hematoxylin solution (Beyotime Institute of Biotechnology) for 5 min at 37˚C and eosin for 1 min at 37˚C. The Mikawa’s score (26) was calculated based on the following: i) Alveolar congestion; ii) hemorrhage; iii) infiltration or aggregation of neutrophils in the airspace or vessel wall; and iv) thickness of alveolar wall/hyaline membrane formation. Each feature was scored on a 5-point scale as follows: 0, minimal damage; 1+, mild damage; 2+, moderate damage; 3+, severe damage; and 4+, max. Eckhoff’s scores (27) were evaluated by using an ordinal scale as follows: Grade 0, minimal or no evidence of injury; grade 1, mild injury consisting of cytoplasmic vacuolation and focal nuclear pyknosis; grade 2, moderate to severe injury with extensive nuclear pyknosis, cytoplasmic hypereosinophilia, loss of intercellular borders, and mild to moderate neutrophil infiltration; and grade 3, severe injury with disintegration of hepatic cords, hemorrhage, and severe PMN infiltration.
For IHC of SP-D, mouse small intestinal tissue sections were prepared as previously described. Sections were fixed using 4% methanol at 4˚C for 24 h, washed in PBS and treated with antigen retrieval solution (Dako; Agilent Technologies, Inc.) for 20 min at 90˚C. After incubation in 5% BSA (cat. no. SW3015; Beijing Solarbio Science & Technology Co., Ltd.) at 4˚C for 30 min, the sections were incubated with anti-SP-D antibody (cat. no. ab234260; Abcam; 1: 100) overnight at 4˚C. An ABC kit (Biolead) and 3,3’diaminobenzidine substrates were used to develop the SP-D signal. Then, sections were incubated with an HRP-conjugated polyclonal goat anti-rabbit secondary antibody (1:200; cat. no. GB23303; Wuhan Servicebio Technology Co., Ltd.) for 1 h at room temperature. Histopathological and IHC analysis were performed using a light microscope (Olympus Corporation; magnification, x200).
Transepithelial electrical resistance (TEER) assay. An epithelial voltohmmeter (World Precision Instruments) was used to measure the transepithelial electrical resistance (TER) of the filter-grown Caco-2 intestinal monolayers as previously described (28). To form the monolayers, Caco-2 cells were sub-cultured after partial digestion with 0.25% trypsin and 0.9 mM EDTA in PBS free of Ca2+- and Mg2+. Caco-2 monolayers were cultured in DMEM supplemented with 10% FBS, 1% non-essential amino acids and 1% glutamine for 3–4 weeks after seeding at a density of 2x105 cells/well.
A Transwell system was used to perform the TEER experiments. Caco-2 cell monolayers with a TEER > 500 Ω cm2 were used for the assay. The relative TER in the various groups was calculated as a percentage of the control Caco-2 monolayers.
Determination of intestinal permeability in vitro. The permeability of the intestinal barrier in Caco-2 cells was determined based on FITC-dextran 4 (FD-4) fluorescence intensity. Briefly, 1 mg/ml FD-4 was applied to the apical side of the Caco-2 cell monolayer at room temperature for 10 min as described previously in the TEER section. The Caco-2 cell monolayer was subjected to fluorescence analysis, and the fluorescence intensity was measured using an Enspire2300 microplate reader. Serum D-lactic acid was measured using coupled liquid chromatography (Waters Corporation). Liquid chromatography was equipped with a binary solvent delivery pump, an autosampler, a column compartments, a PDA detector and controlled using MassLynx v4.1 software (Waters Corporation). A reverse phase Acquity UPLC BEH C18 column (Waters Corporation; 2.1x100 mm; 1.7 µm) and an Acquity UPLC BEH C18 VanGuard™ pre-column (1.7 µm) from Waters Corporation were used. A total of 1 ml whole blood was collected from the LV-NC mice and LV-anti-miR-129-5p mice to obtain the serum at 6 h after reperfusion via tail vein. D-lactic acid was oxidized using D-lactate dehydrogenase, and the absorbance was measured at a wavelength of 450 nm. Diamine oxidase (DAO) levels were assessed using an ELISA kit (cat. no. CB3349172; Shanghai Lianmai Biological Engineering Co.) according to the manufacturer’s protocol. All the mice were administered 750 mg/kg FD-4 via oral gavage for treatment before testing.
Luciferase reporter assay. The dual-luciferase miRNA Target Expression vector pmirGLO (Promega Corporation) was used to generate luciferase reporter constructs. Luciferase activity was assessed using the dual-Glo Luciferase assay system (Promega Corporation). Briefly, cells (2x106/well) were seeded into 48-well plates for 24 h. Lipofectamine 3000 was used to co-transfect cells with cloned SP-D wild-type (WT) 3’untranslated region (UTR) or SP-D mutant (MUT) 3’UTR (both obtained from Shanghai GeneChem Co., Ltd) and LV-miR-29-5p or LV-anti-miR-129-5p. Then, the mixtures were added to cells and incubated for 24 h at room temperature. Following transfection, the activities of firefly and Renilla luciferase were measured by using a Dual-Luciferase Reporter assay system (Promega Corporation). Relative luciferase activity was determined as the ration of firefly to Renilla luciferase.
Statistical analysis. SPSS version 22.0 (IBM Corp.) was used for statistical analysis. GraphPad Prism version 7 (GraphPad Software, Inc.) was used to generate the graphs. Three independent experiments were performed. Unpaired Student’s t-tests or one-way ANOVA followed by a Tukey’s post hoc test were used to compare differences among groups. A Kruskall-Wallis test followed by a Dunn’s post hoc test was used to evaluate the Mikawa’s and Eckhoff’s scores. P < 0.05 was considered to indicate a statistically significant difference.