Mice. Sstem1(P2A−iCre−T2A−mCherry)Mirn and Cckem1(iCre−T2A−mCherry−P2A)Mirn mouse lines were generated in this study. Additional strains used were obtained from the Jackson Laboratories: C57Bl/6J (stock number 000664), B6.Cg-Gt(ROSA)26Sortm6(CAG−ZsGreen1)Hze/J (stock number 007906) (common name Ai6 or Ai6(RCL-ZsGreen) and B6.Cg-Gt(ROSA)26Sortm14(CAG−tdTomato)Hze/J (common name Ai14)39. Mice were bred and group-housed in the pathogen-free animal facility at the University of Nebraska Medical Center (Omaha, NE). Mice were housed in individually ventilated cages that are changed once every two weeks within a laminar flow workstation using micro-isolator technique with ClidoxR-S sterilant. All caging, bedding (cob), and nesting materials were autoclaved prior to use. Water is R/O filtered, chlorinated, and supplied by the HydropacR system. Water and food (Teklad LM-485 Mouse/Rat autoclaved Diet 7012 or Teklad Global 19% Protein Extruded Rodent Diet) were provided ad libitum during the 12-h light/dark cycle. Crinkle paper and social housing were provided in every cage as an environmental enrichment.
Ethical statement. All experimental procedures were approved by the University of Nebraska Medical Center’s Institutional Animal Care and Use Committee and the guidelines for proper animal use and care were strictly followed according to the Guide for the Care and Use of Laboratory animals of the National Institute of Health.
CRISPR reagents, mice generation, and genotyping. Knock-in mice were generated using the Easi-CRISPR method 35, 36. Knock-in models containing new sequences of up to 2kb can be created using Easi-CRISPR with high efficiency57-60. The Easi-CRISPR approach utilizes three components: guide RNA, Cas9 protein to create a dsDNA break in the genome, and a long ssDNA donor to serve as a template to repair the dsDNA break. CRISPR guide RNAs were designed using CRISPOR61, Two-part guide (crRNA and tracrRNA) and Cas9 proteins were purchased from Alt-RTM CRISPR guide RNAs, Integrated DNA Technologies, Inc. (IDT)62, Coralville, IA, USA), long ssDNA donors were obtained from Azenta Life Sciences NJ, USA. CRISPR RiboNucleoProtein (RNP) complexes were microinjected into one cell staged zygotes isolated from super-ovulated C57Bl/6J females (Jackson laboratories stock number 000664). The mouse knock-in protocols that include isolation and microinjection of zygotes, their implantation into pseudo-pregnant mice followed by genotyping of founder offspring were as described previously35, 63. Genomic DNAs from the liveborn offspring were extracted from tail biopsies for genotyping PCRs. Genotyping strategies, primer sequences, and the expected amplicon sizes are shown in Figures 1 and 2. The knock-in regions, including the homology arms, were sequenced using multiple overlapping PCR fragments. Heterozygous founder mice were bred back to the parental strain to establish germ line transmission. Further heterozygous breeding was used to generate mice used for a homozygous colony to breed with the Ai6 and Ai14 reporter strains to generate experimental mice for final analysis. The Sst-Cre knock-in mice were generated in 2018 and transferred to our laboratory in February 2019 and we have bred these mice for 8 generations. The Cck-Cre knock-in mice were generated in 2019 and transferred to our laboratory in February 2020 and we have bread them for 4 generations. Each generation was genotyped and expression of mCherry-Cre verified with anti-mCherry antibody using IHC in brain sections in both male and female mice (n>4M + n>4F).
Immunohistochemistry. Mice were anesthetized with isoflurane and transcardially perfused with saline followed by 4% paraformaldehyde. Brains were harvested and postfixed in 4% paraformaldehyde overnight at 4°C. After fixation brains were incubated in 10%, 20%, and 30% sucrose, 24 hours at 4°C in each solution. Next, brains were frozen and cut on cryostat as 50 µm coronal sections for P0 and 35µm for other animal ages. Floating sections were collected and either processed for immunohistochemistry or mounted on glass slides. To aid in visualizing brain structures, nuclei were counterstained with Hoechst dye (0.5 μg/mL final concentration, Thermo Fisher Scientific, Waltham, MA). The primary antibodies used include anti-mCherry (Cell signaling, cat. no: 43590, host: rabbit, dilution used: 1:500), anti-SST (Genetex, cat. no: GTX71935, host: mouse, dilution used: 1:500), anti-CCK (Immuno Star, cat. no: 20078, host: rabbit, dilution used: 1:500). The secondary antibodies include donkey-anti-rabbit CY3 (Jackson Immuno Research, cat.no: 711-165-152, dilution used: 1:500), donkey-anti-rabbit Alexa Fluor 488 (Jackson Immuno Research, cat. no: 711-485-152, dilution used: 1:500) and donkey-anti-mouse 488 Alexa Fluor 488 (Jackson Immuno Research, cat. no: 715-547-003, dilution used: 1:500). Slides were imaged on a Nikon Eclipse FM inverted confocal laser-scanning microscope. Images were acquired using a 40x (1.4 oil Plan APO OFN25 DIC, 0.17 WD, 0.13) oil objective and LU-NV laser unit measuring wavelengths: 405 nm, 488 nm, and 561 nm. One set of sections was imaged with ImageXpress Pico instrument using 4x, 10x, or 20x objectives. Control staining examples are shown in Supplemental Figure 3. The IHC analysis of Sst-Cre and Cck-Cre mice was observational, and it included comparison of observed spatial staining within all brain regions in our mouse models with the SST and CCK staining in C57Bl adult mice in the Allen Brain Atlas. Every Sst-Cre and Cck-Cre mouse had consistent expression across all brain regions and across different mouse generations. For the analysis of Sst-Cre and Cck-Cre at least 4 females and 4 males were analyzed with anti-mCherry, anti-Sst and anti-Cck antibodies over the period of two years. For figure generation in the manuscript, one litter was used for P0, P7 and P14 and four adults (2 female plus 2 males) from each Sst-Cre x ZsGreen1 and Cck-Cre x ZsGreen1 breedings. SstCre/+ : RosaZsGreen1/+ 1 litter with 8 pups (4F+4M) P0; 1 litter with 6 pups (2F+4M) P7; 1 litter with 8 pups (3F+5M) P14; adult 2F+2M. CckCre/+ : RosaZsGreen1/+1 litter with 8 pups (4F+4M) P0; 1 litter with 3 pups (2F+1M) P7; 1 litter with 3 pups (2F+1M) P14; adult 2F+2M.
Primary neuronal cultures. Primary cortical neuronal cultures were prepared from E14 mouse embryos as previously described64. Briefly, the brain was placed in pre-chilled HBSS solution (without Ca2+ or Mg2+), and two cortices were dissected and cut with scissors into small tissue pieces of similar sizes and transferred to Trypsin/EDTA (0.25%) for 15 min at 37°C. Trypsin was inactivated by adding Trypsin Inhibitor (Sigma T6522) for 5 min. After incubation, the solutions were removed, and the tissue resuspended in Neurobasal medium with B-27 supplement (Gibco #17504-044) and triturated with a fire-polished Pasteur pipette. The cells were pelleted by centrifugation for 10 min at 90 g. The cell pellet was resuspended in Neurobasal medium with B-27 supplement and the cells counted. The cells were plated on poly-D-lysine coated 96-well plates at 70,000 cells/well. The growth medium was Neurobasal medium with B-27 supplement, and Glutamax. Cells were incubated at 37°C, 5% CO2 for up to 10 days. At the endpoint of the incubation, cultures were either imaged live or fixed with 4% PFA. In some experiment, 10 μL of diluted Hoechst dye was added to the wells in the 96-well plate to visualize the nuclei. The cells were imaged using an ImageXpress Pico at 4x, 10x or 20x magnification or EVOS microscope. Primary neuronal cultures were prepared from three independent Sst-Cre X ZsGreen1 Reporter breeding and from two independent Cck-Cre x ZsGreen1 Reporter breeding and from one Cck-Cre x dtTomato Reporter breeding. Cortical cells were pooled from the whole embryonic litter, thus the embryonic neuronal cultures contained mix of neurons derived from unknown number of males and females. Multiple 96-well plates were prepared every time and one plate was taken for analysis at 3, 6 or 9 days to confirm that endogenous ZsGreen1 or dtTomato were present in neuronal cultures for the whole duration of the experiment.