Cell culture
Primary rat RMECs (catalogue no. RA-6065; Cell Biologics Company, Chicago, IL, USA), stored in liquid nitrogen, were quickly incubated in a 37 °C thermostatic water bath until the cell freezing medium had melted completely. The cells were then transferred to a 15 ml centrifuge tube and centrifuged at 1000 × g for 5 min. The supernatant was discarded, and the cell pellet was resuspended in 10 ml of cell culture growth medium (Complete Rat Endothelial Cell Medium, catalogue no. M1266; Cell Biologics) containing 10% fetal bovine serum (FBS; lot 42F0282K, Gibco, Carlsbad, CA, USA) and 1% streptomycin–penicillin. The resuspended cells were then transferred to a T75 cell culture flask and incubated under 5% CO2 at 37 °C. The cell culture medium was replaced once every 2 days. The RMECs from passages 2–6 were used in the experiments. The cells were stimulated when they were > 70% confluent.
Cell stimulations
Lipopolysaccharide (LPS; Sigma-Aldrich, St. Louis, MO, USA) was first dissolved (1 mg/ml) in phosphate-buffered saline (PBS; HyClone, Logan, UT, USA) and diluted in complete cell culture growth medium to a concentration of 100 ng/ml. Hydrogen peroxide (H2O2) solution (35%; 349887, Sigma-Aldrich) was diluted with complete cell culture growth medium to a concentration of 200 μM. d-Glucose (WF0108, WEIAO, China) was dissolved in complete cell culture growth medium to a concentration of 25 mM. There were 2×105 RMECs that was seeded in 6-well plates and stimulated when they were > 70% confluent. The RMECs were collected after stimulation with one or other of these treatments for 0, 12, or 24 h.
Isolation of mitochondrial DNA and transfection
RMEC mtDNA was isolated with the Mitochondrial DNA Isolation Kit (ab65321, Abcam, Cambridge, MA, USA), according to the manufacturer’s instructions. In brief, RMECs (about 5 × 106) were collected and centrifuged at 600 × g for 5 min at 4°C. The cell pellet was then washed with ice-cold PBS and centrifuged at 600 × g for 5 min at 4 ºC. After the supernatant was discarded, 1 × Cytosol Extraction Buffer was added to resuspend the cells and the mixture was incubated on ice for 10 min. The cells were homogenized in an ice-cold dounce tissue grinder and transferred to a 1.5 ml microcentrifuge tube. After centrifugation at 700 × g for 10 min at 4 °C, the supernatant was transferred to a fresh 1.5 ml tube, and centrifuged at 10,000 × g for 30 min at 4 °C. The supernatant was removed and the pellet resuspended in 1 × Cytosol Extraction Buffer and centrifuged again at 10,000 × g for 30 min at 4 °C. Enzyme Mix (5 μl) was added to the tube, which was incubated in a 50 °C water bath for 60 min before centrifugation in a microcentrifuge at the top speed for 5 min at room temperature. The pellet was mtDNA. After the supernatant was removed, Tris–EDTA (TE) buffer was used to resuspend the mtDNA. The concentration of mtDNA was measured with a NanoDrop 2000 spectrophotometer (Thermo Fisher Scientific, Rockford, IL, USA).
RMECs were transfected with the mtDNA using Attractene Transfection Reagent (Qiagen, 301005), according to the manufacturer’s instructions. Briefly, the cells were incubated under normal growth conditions (37 °C and 5% CO2) and were 70% confluent on the day of transfection. The mtDNA was diluted in TE buffer to a concentration of 0.5 μg/μl and then 2 μl of mtDNA was mixed with growth medium containing no serum or antibiotics to a total volume of 100 μl. Attractene Transfection Reagent (4.5 μl) was added to the Eppendorf tube and the transfection complexes were allowed to form. After the solution was pipetted up and down or vortexed, the tube was centrifuged for a few seconds to make the transfection complexes be at the bottom of the tube. The samples were incubated for 15 min at room temperature to allow the transfection complex formation. The medium was replaced with new complete cell culture medium, and the mixture of mtDNA and Attractene Transfection Reagent was added dropwise onto the cells. The plate was gently swirled to ensure the uniform distribution of the transfection complexes. The cells were incubated under their normal growth conditions and the medium was replaced again after 3 h.
Detection of mitochondrial permeability transition pore opening
The opening of the mitochondrial permeability transition pore (MPTP) was detected with the Image-iT™ LIVE Mitochondrial Transition Pore Assay Kit (Invitrogen, I35103), according to the manufacturer’s instructions. RMECs were cultured in a 24-well plate in complete cell growth medium in the presence of LPS (1 mg/mL), H2O2 (200 μM), or high glucose (25 mM) for 24 h. The cells were washed in 1 × Hank’s balanced salt solution (HBSS; Corning). Calcein AM stock solution (1.0 mM), MitoTracker Red CMXRos stock solution (200 µM), and 1.0 mM Hoechst 33342 dye were then combined (1.0 µL of each). Prewarmed (37 °C) HBSS (997 µl) was added to the preparation to produce the labeling solution. A sufficient amount of labeling solution was applied to cover cells adhering to a coverslip. The cells were incubated for 15 min at 37 °C in the dark. A mixture of 1.0 µl of 1.0 M CoCl2 and 999 µl of HBSS was then added and the cells were incubated for another 15 min at 37 °C in the dark. The cells were washed twice with warm HBSS buffer to remove any residual dye and to minimize the background noise, and mounted in warm buffer. The cells were observed under a Leica TCS SP8 WLL confocal microscope with a 63×, 1.35-NA oil-immersion objective. The approximate excitation/emission peaks of calcein after hydrolysis were 494/517 nm, respectively; the approximate excitation/emission peaks of MitoTracker Red CMXRos dye were 579/599 nm, respectively; and the approximate excitation/emission peaks of Hoechst 33342 dye were 350/461 nm, respectively. The calcein, MitoTracker Red CMXRos, and Hoechst 33342 signals were observed with standard filter sets.
Detection of mtDNA and cytosolic DNA with staining
Immunofluorescent double-label staining was used to assess the release of mtDNA into the cytoplasm. After 24 h in the presence of LPS, H2O2, or high glucose, RMECs were washed twice with PBS. MitoTracker Red stock solution (1 mM; MitoTracker™ Red CMXRos - Special Packaging, Invitrogen, M7512) was diluted in growth medium without FBS. The prewarmed (37 °C) staining solution containing MitoTracker Red was added to the cells in a 24-well plate to a final working concentration of 400 nM. The cells were cultured for 15–45 min under standard growth conditions in the dark. Quant-iT™ PicoGreen™ dsDNA Reagent (Invitrogen, P7581) was diluted 200-fold, according the manufacturer’s instructions. After MitoTracker Red staining solution was removed and the cells were washed twice with PBS. An aliquot (1.0 ml) of the aqueous working solution of Quant-iT™ PicoGreen dsDNA Reagent was added to each cell sample, which was incubated for 10 min at 37 °C in the dark. The PicoGreen reagent was discarded and the cells were rinsed with 4¢,6-diamidino-2-phenylindole (DAPI; Sigma-Aldrich) solution for 10 min. After staining was complete, the staining solution was replaced with fresh prewarmed medium or buffer, and the cells were observed with a fluorescence confocal microscope (Leica TCS SP8 WLL). The approximate excitation/emission peaks of MitoTracker Red were 579/599 nm, respectively, and the approximate excitation/emission peaks of Quant-iT™ PicoGreen dsDNA Reagent were 502/523 nm, respectively.
Detection of cytosolic mtDNA with PCR
To detect cytosolic mtDNA with a PCR assay, the cytosol of RMECs was extracted with a Mitochondria Isolation Kit for Cultured Cells (C3601, Beyotime, China), according to the manufacturer’s instructions. Ice-cold PBS was used to wash the RMECs, which were then centrifuged at 600 × g for 5 min at 4 °C. The supernatant was removed and discarded. The pellet was resuspended in Mitochondria Isolation Reagent and incubated for 15 min on ice. The cell suspension was transferred to a dounce tissue grinder and homogenized with 15 passes on ice. The homogenate was transferred to a 1.5 ml microcentrifuge tube, and centrifuged at 600 × g for 10 min at 4 °C. The supernatant was transferred to a fresh 1.5 ml tube and centrifuged at 11,000 × g for 10 min at 4 °C. The cytosolic supernatant was collected. The FlexiGene DNA Kit (no. 51206, Qiagen) was used to isolate the mtDNA from the collected cytoplasm. Buffer FG1 was added to the collected cytoplasm in a 2 ml Eppendorf tube and mixed by pipetting. Buffer FG2 was then added and the tube was inverted three times. The tube was placed in a heating block and incubated at 65 °C for 10 min. Isopropanol (100%) was added and the tube was inverted to induce DNA precipitation. After centrifugation for 3 min at 10,000 × g, the supernatant was discarded and Buffer FG3 was added to dissolve the DNA during incubation for 30 min at 65 °C in a heating block. The mtDNA was detected with quantitative PCR with primers that hybridized to sequences in the gene encoding mitochondrial cytochrome c oxidase 1 (mt-Co1). The nuclear DNA was measured with PCR using primers that hybridized sequences in the 18S rDNA (encoding 18S rRNA). The copy numbers of mtDNA were normalized against the copy numbers of nuclear DNA, and compared between groups. All PCR primers were synthesized by Tsingke Biological Technology (Shanghai, China). The primers for 18S rDNA were 5¢-TAGAGGGACAAGTGGCGTTC-3¢ (forward) and 5¢-CGCTGAGCCAGTCAGTGT-3¢ (reverse). The primers for mt-Co1 were 5¢-GCCCCCGATATGGCGTTT-3¢ (forward) and 5¢-GTTCAACCTGTTCCTGCTCC-3¢ (reverse).
Western blotting analysis
Each sample was collected and suspended in lysis buffer (Cell Signaling Technology, Beverly, MA, USA). The mixture was centrifuged at 10,000 × g for 15 min. The BCA Protein Assay Kit (Beyotime, Shanghai, China) was used to determine the protein concentrations. Cytoplasmic Extraction Reagents (Thermo Fisher Scientific) were used to separate the nuclear proteins and cytoplasmic proteins. The proteins were separated with SDS-PAGE and transferred to polyvinylidene difluoride membranes (Millipore, Billerica, MA, USA). The membranes were blocked with 5% bovine serum albumin for 1 h and incubated with the primary antibody overnight. The antibodies used for this assay were: anti-cGAS antibody (ab179785, Abcam), anti-ICAM1 [1A29] antibody (ab171123, Abcam), anti-TBK1/NAK (D1B4) rabbit mAb (#3504, Cell Signaling Technology), anti-phospho-TBK1/NAK (Ser172) (D52C2) XP® rabbit mAb (#5483, Cell Signaling Technology), anti-IRF3 (D83B9) rabbit mAb (#4302, Cell Signaling Technology), anti-phospho-IRF3 (Ser396) (D6O1M) rabbit mAb (#29047, Cell Signaling Technology), anti-NF-κB P65 (D14E12) XP rabbit mAb (#8242, Cell Signaling Technology), anti-phospho-NF-κB P65 (Ser536) (93H1) rabbit mAb (#3033, Cell Signaling Technology), anti-STING (D1V5L) Rabbit mAb (#50494, Cell Signaling Technology), anti-Interferon beta antibody (ab140211,abcam), anti-β actin antibody (ab8227, Abcam), anti-lamin B1 antibody (a nuclear envelope marker; ab16048, Abcam), and horseradish-peroxidase-conjugated goat anti-rabbit IgG H&L (ab205718, Abcam). After the membranes were washed three times with 1 × TBS–Tween buffer, they were incubated with the secondary antibody for 1 h at room temperature. Pierce ECL Western Blotting Substrate (Thermo Fisher Scientific) and a Kodak Digital Imaging System (Kodak, Rochester, NY, USA) were used to visualize and quantify the immunoblots.
Immunofluorescence
Coverslips were placed in 24-well plates before they were seeded with 5×104 cells. After stimulation, the RMECs were washed twice with PBS and fixed with 4% paraformaldehyde for 10 min. The cells were washed again and the cultures incubated with blocking buffer containing 0.3% Triton X-100 and 5% goat serum for 1 h at 37 °C. They were then incubated overnight at 4 °C with the primary antibody (anti-TMEM173/STING antibody, diluted 1:50; cat 19851-1-AP, Proteintech) and co-stained with ER, ERGIC and Golgi maker respectively (Calnexin Monoclonal Antibody (GT1563), diluted 1:100; cat MA5-31501, Invitrogen, LMAN1 Monoclonal Antibody (OTI1A8), diluted 1:100; cat MA5-25345, Invitrogen, Purified Mouse Anti-GM130, diluted 1:100; cat 610822, BD bioscience). After the RMECs were rinsed with PBS, they were incubated with the secondary antibody (Alexa-Fluor®-488-conjugated goat anti-rabbit IgG H&L, diluted 1:1000; ab150077, Abcam, Alexa-Fluor®-555-conjugated goat anti-mouse IgG H&L, diluted 1:1000; ab150114, Abcam) for 60 min at room temperature and counterstained with DAPI (Sigma-Aldrich) for another 10 min. The cells were washed twice with PBS and observed with a laser confocal microscope (Leica Microsystems).
Real-time PCR
RMECs were treated as described above and the total RNA was isolated with TRIzol Reagent (Invitrogen). The mRNA was reverse transcribed into cDNA with the PrimeScript RT reagent Kit (Takara, Shiga, Japan), according to the manufacturer’s protocol. The LightCycler 480 II real-time PCR instrument (Roche, Basel, Switzerland) was used to perform real-time PCR in 10 μl reaction mixtures containing 0.2 μl of the forward primer, 0.2 μl of the reverse primer, 1 μl of cDNA, 5 μl of 23 LightCycler 480 SYBR Green I Master Mix (Roche), and 3. 6 μl of nuclease-free water. The thermal cycling parameters were 95 °C for 10 min, followed by 40 cycles of 95 °C for 10 s and 60 °C for 30 s. The mRNA levels were normalized to those of ACTB mRNA and calculated with the 2−ΔΔCt method. All PCR primers were synthesized by Tsingke Biological Technology (Shanghai, China). The primers are shown in Table S1.
Statistical analysis
All statistical analyses were performed with SPSS for Windows version 17.0 (SPSS, Inc., Chicago, IL, USA). Data are presented as means ± standard deviations. Representative images of all assays are shown, and the quantitative results are the means of three independent experiments. Differences between two groups were compared with the Mann–Whitney U test. To compare differences among three or more groups, the Kruskal–Wallis test was used in this study. Values of P < 0.05 were considered statistically significant.