Abrupt permafrost thaw is known to accelerate greenhouse gas emissions relative to active layer deepening. However, most of its mechanisms have not yet been incorporated in Earth system and global climate models (Kuhn et al., 2018). This is due to the small relative area of the disturbances, despite their biogeochemical significance (Walter Anthony et al., 2018; Heslop et al., 2020; Turetsky et al., 2020). The most frequent and widespread mechanism of abrupt permafrost thaw is thermokarst lake and pond formation (Bouchard et al., 2017; Walter Anthony et al., 2018; Wauthy et al., 2018). These aquatic environments exhibit less than 10,000 m2 and are generally less than 5 m deep (Bégin & Vincent, 2017). Throughout their life span they are biogeochemical hotspots, releasing carbon dioxide (CO2) and methane (CH4) (Vonk et al., 2015; Matveev et al., 2016; Kuhn et al., 2018; Zandt et al., 2020).
Optical satellite, airborne and Unmanned Aircraft Systems (UAS) remote sensing are essential tools to map and understand the dynamics of important constituents of waterbodies; e.g., blue-green algae (cyanobacteria) [BGA], chlorophyll a [Chl], fluorescent dissolved organic matter [fDOM], colored dissolved organic matter [CDOM], dissolved oxygen [DO], total suspended solids [TSS] (Toming et al., 2016; Peterson et al., 2020; Sagan et al., 2020). However, there are many challenges for the remote sensing mapping and optical monitoring of small waterbodies, from spatial resolution to co-registration errors (Pekel et al., 2016; Muster et al., 2019; Olefeldt et al., 2021). In addition, vegetation surrounding waterbodies may cast shadows, causing difficulties for the analyses of the water spectral characteristics.
Ecologically, shadowing limits the amount of incoming visible and ultraviolet radiation, making it an important factor for aquatic ecosystems. The reduction of incident solar radiation may also affect the water thermal regime, stratification, presence, concentration and behavior of certain chemical species, photosynthetic, photochemical and photobiological transformations, aquatic ecosystem structure and productivity, primary production, microbial communities and greenhouse gas fluxes (Magnuson et al., 1997; Vincent, 2009; Przytulska et al., 2016; Williamson et al., 2020).
In optical remote sensing applications, shadows changing at-sensor solar radiance, are mostly considered as noise that should be removed. Shadows cause biases in spectral indexes (e.g., NDVI, Bowen ratio), indicators (e.g., crop productivity) and spectral properties (Stagakis et al., 2012; Aboutalebi et al., 2019). They can also be problematic for image classification, causing loss of information (Mora et al., 2015; Movia et al., 2016; Milas et al., 2017; Al-Najjar et al., 2019). In optical remote sensing of water, shadows can cause false positive detections (Feyisa et al., 2014; Fisher et al., 2016; Pekel et al., 2016; Xie et al., 2016). Distinguishing the small differences between shadows and water, and resolving the effects on spectral reflectance that vary through space and time, remain important challenges (Tian et al., 2017; Guo et al., 2020; Pickens et al., 2020; Yan et al., 2020).
Shadowing problems in remote sensing have been addressed by techniques such as thresholding (Parmes et al., 2017), 3D reconstruction based on 2D objects morphometrics (Zhu et al., 2015), reduction and information recovery (e.g., gamma correction, multisource data fusion) (Movia et al., 2016) and predictive models (Hung et al., 2012). Although the constraints imposed by shadows and potential solutions have received increasing attention in the remote sensing literature, research is still lacking about the effects of shadows on optically contrasting waterbodies (Cordeiro et al., 2021).
Our main goal was to evaluate the effects of vegetation shadowing on permafrost thaw lake water reflectance and its potential impacts on remotely sensed products. We evaluated studied thaw lakes of the boreal forest-tundra transition zone in Nunavik, subarctic Canada. This region provides an ideal model system for assessing and improving remote sensing products for permafrost thaw waters because its thermokarst waterbodies are optically diverse, spanning a wide range of turbidities, dissolved organic carbon concentrations and colors (Watanabe et al. 2011). We assessed the effects of cast shadowing on water spectral properties using UAS data (point clouds and multispectral orthomosaics), showing its importance and efficiency as ground truth for other Earth Observation satellite data. Cast shadowing was analyzed by assessing the area of shady and sunlit pixels throughout the year, and the reflectance bias across the range of watercolors.