This study is the first to ascertain the metabolic profiling of the culture media that supported the propagation of eCB-MSCs using metabolomics. We were not only able to identify the depleted or excreted metabolites in MSCs, but we were also able to identify pathways that were expressed in both the early and late stages of MSCs growth.
We found two metabolites to be significantly different between the early and the late passage of eCB-MSCs culture: AKG and creatine.
AKG levels were significantly increased as the passage number increased; the AKG levels were also much higher in both the early and late passage as compared to the plain culture media. This suggests that cells are overproducing AKG and excreting excess into the media. AKG is also known as oxoglutaric acid, or alpha-ketoglutarate, which is an organic acid, and more specifically a keto acid. AKG has shown to have a key role in multiple cellular and metabolic pathways. This includes its involvement in the Tricarboxylic Acid (TCA) cycle, its effect on cell growth and proliferation, and lastly its antioxidant effects.
The primary role of AKG in cells is its involvement in the eight-step process of the TCA, also known as the Kreb Cycle, or the citric acid cycle. The TCA cycle's primary purpose is to produce NADH and FADH, electron carriers, which go through oxidative phosphorylation to generate ATP (Berg, Tymoczko, & Stryer, 2002). In addition to the TCA cycle, AKG can be generated anaplerotically from glutamate via glutamate dehydrogenase, a process called oxidative deamination (Smith, Li, Stanley, & Smith, 2019; N. Wu et al., 2016). In addition to partaking in energy metabolism, AKG has shown to enhance cell growth and proliferation. For instance, an increased level of AKG in the culture media of fibroblast and chondrocyte cells resulted in an increase in cells’ proliferation rate (Singh, Vishnoi, & Kumar, 2013). One explanation as to how AKG could enhance cell growth and proliferation can be seen from the pancreatic progenitor-like cells, which enhanced the proliferation rate via upregulation of Ten-Eleven Translocation enzymes; however, such results were dose-dependent (Song et al., 2018). Another explanation can be due to the activation of h G-protein coupled receptors through AKG, which ultimately increases cell metabolism and signaling (W. He et al., 2004).
In addition to AKG’s role in energy metabolism and cell proliferation, its antioxidant effects are a vital process in cells. The antioxidant effect of AKG can be categorized in two ways, being direct and indirect effects. For instance, the direct impact of AKG is to react with hydrogen peroxide, which can be produced by oxidative phosphorylation or as a by-product of cellular metabolism, to produce succinate (Lennicke, Rahn, Lichtenfels, Wessjohann, & Seliger, 2015; Long & Halliwell, 2011). Indirectly, AKG has shown to act as a scavenger for ammonia, minimizing cells' exposure to potential accumulated toxic ammonia in the cell culture, consequently enabling cells to proliferate for a more extended period (Singh et al., 2013).
As evident, AKG has a variety of roles that are vital in proper cell growth and proliferation. This study presented that AKG level throughout the long-term culture continuously rose in the spent media, thus suggesting that these levels are also increased in the cells throughout the long-term culture. Therefore, it can be proposed that these cells naturally produce AKG to facilitate the functions stated above; energy production, cellular proliferation, and antioxidant defense. However, we do not know which functions are activated more frequently at the early or late passage of eCB-MSCs. Therefore, further examination must be done in order to produce a concrete answer.
Although our study provides insight into which metabolites play an important role in the long term cell growth of equine CB-MSCs, it is unclear as to which pathway the AKG is being produced or what its main effects are. However, it can be suggested that higher proliferation rate in the early passage combined with a higher production level of AKG could be due to the high demand of cell the cell growth and proliferation. In comparison, the lower proliferation rate in the late passage combined with a much higher level of AKG can suggest that cells may be dealing with some form of toxicity, and thus require more antioxidant effects. In order to be sure, further analysis must be done to verify the suggested results.
The second metabolite that changed significantly during the early and the late passage is creatine, an amino acid. Cells depleted creatine from the media in both the early and late passage; with more depletion occurring in early passage as compared to the later passage. The role of creatine has been extensively studied in muscle and cardiac cells (Chilibeck, Kaviani, Candow, & Zello, 2017; Farshidfar, Pinder, & Myrie, 2017; Gaddi, Galuppo, & Yang, 2017; Zervou, J. Whittington, J. Russell, & A. Lygate, 2015). Creatine is known to be part of the phosphocreatine “shuttle” (transport) system hypothesis, which is a quicker way of producing energy regions under high metabolic demand (Guimarães-Ferreira, 2014; Wyss & Kaddurah-Daouk, 2000). Due to ATP's high level in the mitochondria, high-energy inorganic phosphate is transferred from ATP and is transferred to creatine via an enzyme called creatine kinase. The combination of the phosphate and the creatine creates phosphocreatine and ADP. Then, the phosphocreatine diffuses into the cytoplasm, undergoes a reversal change with the help of creatine kinase, and generates ATP and creatine. The ATP can be used for energy, and the creatine returns to the interior of mitochondria (Guimarães-Ferreira, 2014). Although the shuttle system is a widely known phenomenon, some criticize this hypothesis, suggesting that such a system may not be a one-fit-for-all cell type (Wyss & Kaddurah-Daouk, 2000). This suggests that cells require higher energy levels in both passages, but more so in the early passage, which can be due to the higher growth rate in the early as compared to the late passage.
Several studies have suggested that undifferentiated MSCs utilize a mixture of glycolysis and oxidative phosphorylation in order to produce the required energy for the cells (Barilani et al., 2019; C.-T. Chen, Shih, Kuo, Lee, & Wei, 2008; Hu et al., 2016). In particular, glycolysis contributes to more than 97% of ATP production; in comparison, oxidative phosphorylation contributes less than 3% of ATP production (Fillmore et al., 2015). This could be because glycolysis is much faster than oxidative phosphorylation (Jose, Bellance, & Rossignol, 2011). By observing the metabolite levels, the creatine level was shown to continuously decrease in the spent media, suggesting that these cells are utilizing creatine. From the metabolomic analysis and the enrichment analysis, we can suspect that eCB-MSCs do use both glycolysis in addition to oxidative phosphorylation. However, we suggest for the first time that creatine may play a role in ATP production in cultured eCB-MSCs. Whether creatine is needed for more efficient energy production via the shuttle system or another function is not clear, and further inspection is necessary.
Following the metabolomic results, during the early passage, the enrichment analysis provided seven significant pathways that were significantly active, whereas the late passage had 15 pathways. When looking at the early passage, we found that the significant-top pathway is purine metabolism. This pathway maintains adenosine and guanine cellular levels via synthesis and degradation of purine nucleotide (J. Yin et al., 2018). The synthesis of purine nucleotide in mammalian cells can be either via a complementary salvage pathway or the de novo biosynthetic pathway. However, the complementary salvage pathway generally accounts for most cellular purine needs. The de novo biosynthetic pathway provides an additional force when there is a high requirement for purine nucleotides (J. Yin et al., 2018). In the degradation process, the purines undergo several catabolic reactions to produce xanthine and, ultimately, uric acid (Moffatt & Ashihara, 2002; J. Yin et al., 2018). Comparing the expression level of the purine metabolism pathway from the early passage to the late passage, we found that this pathway was not significant in the late passage; it was the 50th pathway expressed. This is not surprising, as several studies have suggested that cells at an early passage tend to proliferate faster, requiring greater DNA synthesis, and this rate tends to decrease as the passage number increases (Kwist et al. 2016; Neumann et al. 2010; Yang et al. 2018). Such phenomena can be referred to as the replicative senescence, where cells undergo three stages of proliferation, including an initial vigorous proliferation, declining proliferation followed with quiescence, or no proliferation (Peterson, Tachiki, & Yamaguchi, 2004).
In contrast, the first highly expressed pathway in the late passage is the metabolism of amino acids arginine and proline from glutamate. Under normal conditions, the production of arginine endogenously is sufficient for the cell’s needs. However, under metabolomic stress, organ maturation and development of exogenous sources may be needed (Luiking & Deutz, 2007). Although arginine was not significant in the presented data analysis, we found a decrease in arginine levels in the spent media in both the early and the late passage of eCB-MSCs. This suggests that these cells took arginine up from the expansion media. The effect of arginine has been shown to be cell type-dependent (Greene et al., 2013; J. Y. Kim et al., 2011, Albina, Cui, Mateo, & Reichner, 1993; Okazaki et al., 1997). In MSCs, arginine has been shown to increase cell proliferation (Huh et al., 2014). In addition to enhancing cell proliferation, arginine degradation plays a vital role as an intermediate of the urea cycle to eliminate nitrogenous waste. When needed, arginine can also convert back to glutamate and, subsequently AKG for the TCA cycle (Albaugh & Barbul, 2017). Similarly, proline can convert to AKG and enter the TCA cycle and convert to ornithine to enter the urea cycle (Pandhare, Donald, Cooper, & Phang, 2009). In mammalian cells, under stressed conditions, proline biosynthesis is upregulated (Krishnan, Dickman, & Becker, 2008; Meena et al., 2019). It has been suggested that this upregulation is to combat the cellular stress via either directly scavenging for reactive oxygen species (ROS), activating glutathione synthesis, or invoking signaling pathways that upregulate the cellular antioxidant defenses (Krishnan et al., 2008). In this study, although not significant, the cells continuously excreted proline. This could either be used for energy production via the TCA cycle (ultimately oxidative phosphorylation) or as an antioxidant defense mechanism.
Although pyruvaldehyde (also known as methylglyoxal) degeneration is the second expressed pathway in the late passage of eCB-MSCs, it is a critical pathway that must be covered in this paper. Methylglyoxal is a by-product of glycolysis, lipid, and protein metabolism. It has been shown to have a toxic role in cells, as it enhances ROS formation, DNA damage, cell apoptosis, and senescence (Allaman, Bélanger, & Magistretti, 2015; H. Li, Zheng, Chen, Liu, & Zhang, 2019; Okado et al., 1996). In order to avoid the toxic effect of methylglyoxal, cells have natural degradation mechanisms such as glyoxalase, aldose reductase, aldehyde dehydrogenase, and carbonyl reductase, with the glyoxalase system being the central detoxifying system for eliminating methylglyoxal (Allaman et al., 2015). Although the enrichment analysis provides us with an insight into the activation of the pyruvaldehyde degeneration pathway, it is not clear which specific mechanism is being activated. Therefore, this suggests that the level of methylglyoxal is much higher in the later passage, and thus may be a factor in ROS formation, DNA damage and/or cell apoptosis and senescence. Unfortunately, the levels of methylglyoxal in the metabolomic analysis were not present, and thus further analysis must be done. However, from this we can suggest that cells in the later passage are combating some form of toxicity, and its secondary effects may be the trigger for higher production of AKG in the later passage of the cells. In summary, methylglyoxal is correlated to oxidative stress and has already been shown to be a promising biomarker in measuring the stress level in plant cells and being a reliable biomarker for tumor growth (Angeloni, Zambonin, & Hrelia, 2014; Irigaray & Belpomme, 2020; Kaur, Singla-Pareek, & Sopory, 2014).