MMP1 mRNA was highly expressed in HNSCC via bioinformatics analyses
Accumulating evidence suggested that MMP1 was highly expressed in most cancers as well as pan-cancer analysis (Figure S1) from GEPIA2[19, 20]. In order to investigate the expression level of MMP1 in tumor specimens of HNSCC patients, we preliminarily evaluated the mRNA expression level of MMP1 by interrogating the public gene expression database including TCGA and GEO. As shown in Fig.1A, TCGA-HNSCC cohort showed that MMP1 mRNA expression was significantly upregulated in HNSCC samples compared to their non-tumor counterparts. Additionally, five independent HNSCC patients’ cohorts from GEO database such as GSE13601, GSE25099, GSE30784, GSE9844X and GSE37991 cohorts were utilized to identify MMP1 mRNA expression. As shown in Fig.1B–F, the abundance of MMP1 mRNA in HNSCC samples was also significantly increased in tumor samples. These figures indicated MMP1 might be involved in the occurrence and development of HNSCC.
MMP1 overexpression was associated with clinical parameters in HNSCC patients
In order to further determine the expression pattern of MMP1 in HNSCC, we next performed immunohistochemical staining on 103 samples of primary HNSCC. The detailed demographic and clinicopathological parameters of these patients were listed in Table 1. In short, 54 males and 49 females were enrolled with an average age of 63.8 years. The follow-up time ranged from 4 to 95 months, with an average of 57.1 months. Until the last follow-up, 54 (52.4%) patients survived with disease-free, 9 (8.7%) patients still alive but with recurrences and/or cervical nodal metastases, 40 (38.9%) patients died due to post-surgical recurrence, metastases or other unrelated diseases. As shown in Fig.2A-F, rare MMP1 staining was observed in most healthy oral mucosa samples and a few HNSCC samples, whereas positive MMP1 cytoplasmic staining was detected in a variety of HNSCC samples. The expression patterns of MMP1 in HNSCC and normal oral epithelium were classified according to immunohistochemical scores. Consequently, MMP1 protein abundance could be categorized into low (40) or high expression (63) in HNSCC samples while negative (6), low (8) or high expression (6) in normal oral epithelial samples, which suggested that MMP1 was abnormally overexpressed in HNSCC (P<0.0001, chi-square test). The relationships between MMP1 expression and clinical parameters of HNSCC patients was shown in Table 1. There were no significant associations between MMP1 expression and gender, age, smoking, alcohol drinking and clinical stage. However, high MMP1 expression positively associated with advanced tumor size, advanced pathological grade and cervical node metastasis and with P-value 0.0097, 0.0006 and 0.0280, respectively.
Table 1
The associations between MMP1 expression and multiple clinicopathological parameters in HNSCC samples.
Clinicopathological parameters
|
Cases
|
MMP1
|
P-values
|
|
Low
|
High
|
|
Gender
Male
Female
|
103
54
49
|
40
23
17
|
63
31
32
|
0.4269
|
Age
≤60
>60
|
43
60
|
18
22
|
25
38
|
0.6829
|
Smoking
No
Yes
|
75
28
|
30
10
|
45
18
|
0.8211
|
Alcohol use
No
Yes
|
61
42
|
20
20
|
41
22
|
0.1526
|
Tumor size
T1-T2
T3-T4
|
69
34
|
33
7
|
36
27
|
0.0097*
|
Pathological Grade
I
II
III
|
66
17
20
|
34
5
1
|
32
12
19
|
0.0006*
|
Cervical node metastasis
N(0)
N(+)
|
71
32
|
33
7
|
38
25
|
0.0280*
|
Clinical stage
I
II
III
IV
|
18
53
20
12
|
8
20
10
2
|
10
33
10
10
|
0.2842
|
* indicate statistical significance with p-values less than 0.05.
Aberrant overexpression of MMP1 significantly associated with poor prognosis in HNSCC patients
Next, Kaplan-Meier survival analysis was utilized to investigate the correlation between MMP1 expression and patient prognosis. As shown in Fig.3A-B, the outcome of Kaplan-Meier analysis revealed that high expression of MMP1 was related to poor prognosis in overall survival and disease-free survival (log-rank test, P=0.0248, 0.0202). Moreover, the similar conclusion from GSE41613, GSE42743 and TCGA-HNSCC cohort also showed that overexpression of MMP1 had reduced overall survival compared to low MMP1 expression (Log-rank, P=0.031, 0.0526, 0,046, Fig. 3C-D and Figure S2A). However, there was no correlations between MMP1 mRNA expression and disease-free survival in TCGA-HNSCC cohort, when patients were divided into low and high MMP1 expression subgroups using the median of MMP1 mRNA as cutoff (Figure S2B). We further investigated the associations between the abundance of MMP1 mRNA and pathological grade and clinical stage in TCGA-HNSCC. There were also no correlations between MMP1 mRNA expression and clinicopathological parameters (Figure S2C, D). Additionally, we evaluated the prognostic value of MMP1 expression in HNSCC by univariate and multivariate survival analysis. Consistent with Kaplan-Meier survival analysis, univariate regression analysis also showed that MMP1 expression was significantly correlated with patient survival (P=0.023, Table 2). Moreover, multivariate regression analysis demonstrated MMP1 expression was identified as an independent factor of patient survival after adjusting for other demographic and clinicopathological parameters. (P=0.014, Table 2).
Table 2
Univariate and multivariate survival analyses (proportional hazards method) for patients with primary HNSCC.
Variable
|
Univariate survival analysis
|
Multivariate survival analysis
|
|
Hazard ratio
|
95% CI
|
p-value
|
Hazard ratio
|
95% CI
|
p-value
|
Gender (male, female)
|
1.132
|
0.558-2.299
|
0.731
|
1.070
|
0.334-3.423
|
0.909
|
Smoking (No, Yes)
|
1.095
|
0.504-2.378
|
0.819
|
1.389
|
0.469-4.108
|
0.553
|
Alcohol use (No, Yes)
|
0.802
|
0.389-1.654
|
0.550
|
0.648
|
0.205-2.047
|
0.460
|
Age (≤60, >60)
|
1.192
|
0.561-2.535
|
0.648
|
1.588
|
0.730-3.452
|
0.243
|
Tumorsize (T1-T2, T3-T4)
|
0.675
|
0.236-1.931
|
0.463
|
0.575
|
0.199-1.660
|
0.306
|
Pathological grade (I, II-III)
|
1.307
|
0.871-1.961
|
0.196
|
1.206
|
0.779-1.867
|
0.838
|
Cervical nodal metastasis (N0, N+)
|
1.402
|
0.628-3.133
|
0.410
|
1.816
|
0.483-6.832
|
0.377
|
Clinical stage (I-II, III-IV)
|
1.302
|
0.548-4.133
|
0.549
|
1.273
|
0.788-2.198
|
0.641
|
MMP1 expression (low, high)
|
3.306
|
1.163-7.928
|
0.023*
|
3.410
|
1.281-9.082
|
0.014*
|
* indicate statistical significance with p-values less than 0.05.
Increased MMP1 expression in chemical‑induced HNSCC tumorigenesis
Based on our findings that high expression of MMP1 in human HNSCC samples, as shown in Fig.4A, a well-established chemical-induced mouse model was utilized to further explore the expression of MMP1 in the occurrence and development of HNSCC. 4NQO treatment led to multiple lesions of the tongue including epithelial hyperplasia, dysplasia, carcinoma in situ and squamous cell carcinoma, which largely reproduced the multi-stage tumorigenic biological behavior of HNSCC. As shown in Fig.4B-I, immunohistochemical staining of MMP1 in mouse specimens indicated significant cytoplasmic staining in dysplasia, carcinoma in situ and invasive carcinoma, while negative or low staining in normal tongue epithelial. Positive MMP1 cytoplasmic staining was commonly observed in carcinoma (100%, 10/10), hyperplasia (60%, 6/10), and dysplasia/carcinoma in situ (60%, 6/10), but much less in samples with healthy mucosa (20%, 2/10). Moreover, consistent with IHC findings, qRT-PCR results revealed that the mRNA levels of MMP1 in carcinoma in situ/SCC samples were highly upregulated compared with normal tongue samples (Fig. 4J). Above all, our findings demonstrated that MMP1 might be a putative oncogene driving the occurrence and development of HNSCC.
MMP1 depletion inhibited cell proliferation, migration/invasion and promoted apoptosis in HNSCC
The above experiments have demonstrated the tumor promoting effect of MMP1, we next aimed to elucidate its oncogenic roles by siRNA-mediated loss of function approach during HNSCC initiation and progression. We first detected the expression of MMP1 in a group of HNSCC cell lines and found that MMP1 protein abundance was highly overexpressed in all HNSCC cell lines compared with HOK cells (Fig.5A). We next selected Cal27 and Fadu cells for siRNA-mediated knockdown experiments owing to relatively higher MMP1 protein in them. By introducing two independent siRNAs targeting human MMP1 into Cal27 and Fadu cells, the subsequent changes of MMP1 expression and cell phenotype were monitored. As shown in Fig.5B, after siRNA transfection, MMP1 protein expression was significantly decreased in Cal27 and Fadu cells. Then we utilized these transfected cells for phenotypic experiments. CCK-8 viability assay and colony formation assay indicated significantly lower proliferation rate in Cal27 and Fadu cells following MMP1-siRNA transfection (Fig.5C-E). In addition, cytometric assay showed that the proportions of apoptotic cells in siMMP1-transfected cells were significantly increased from 1.3% to 5.0/8.3% in Cal27, from 2.6% to 20.8/41.3% in Fadu, respectively (Fig.5F, G). Both wound healing and transwell invasion assays demonstrated the migratory and invasive abilities of cells following MMP1 knockdown were significantly reduced (Fig.5F-I). In line with these findings, western blot and qRT-PCR results indicated the protein and mRNA expression of EMT/metastasis-associated marker Vimentin, N-cadherin and Snail were down-regulated concomitant with E-cadherin up-regulated following MMP1 knockdown (Fig. 5K-M). Finally, we generated generic EMT signature to score the EMT status of these samples from TCGA-HNSCC cohort, which was a useful tool for objective, systematic investigation of EMT roles and dynamics in cancer progression, treatment response, and survival [21]. Consistent with above findings, our results from this scoring system revealed that MMP1 expression was significantly associated with EMT score in TCGA-HNSCC (R=0.322, P<0.0001, Fig.5N). These results suggested that MMP1 knockdown inhibited cell proliferation, migration/invasion and activates apoptosis in HNSCC by EMT.
Functional enrichment analysis of the differentially expressed genes (DEGs) correlated to MMP1
Next, we utilized functional enrichment analysis to complement the in vitro loss-of-function experiment in exploring MMP1 pro-tumorigenic functions. Firstly, we screened 26526 negative and 10403 positive genes correlated to MMP1 from TCGA-HNSCC on GEPIA 2. (Figure S3A). Then, we performed GO and KEGG analysis on these genes. The data suggests that MMP1 correlated genes enriched in numerous cancer related biofunction and pathways such as wound healing, cell-substrate adhesion, cell-matrix adhesion, PI3K-Akt signaling pathway, human papillomavirus infection, focal adhesion, MAPK signaling pathway and proteoglycans in cancer, indicating MMP1 played a pro-tumorigenic role by these pathways (Figure S3B, C). We further divided the expression of MMP1 into high-expression group and low-expression group (median as cutoff) by the method of bipartition in TCGA-HNSCC data. Then, we utilized bioinformatics analysis to recognize the nominee genes that might be correlated with high/low group of MMP1 (Figure S3D-S3F). Consistent with above findings, GO and KEGG analysis for the correlated genes associated with high group of MMP1 were significantly enriched in wound healing, cell-substrate adhesion, cell-matrix adhesion, PI3K-Akt signaling pathway, human papillomavirus infection, focal adhesion and proteoglycans in cancer (Fig. 6A, C). Additionally, KEGG and GO analysis showed the correlated genes associated with low group of MMP1 were related to cell cycle and metabolism (Fig. 6B, D). Finally, we analyzed the differentially expressed genes (DEGs) between two groups using GSEA analysis. The results revealed that DEGs between two groups were significantly enriched in EMT pathway (Fig. 6E), epidermal cell differentiation (Fig. 6F), focal adhesion (Fig. 6G) and p53 signaling pathway (Fig. 6H). Above all, combined with cell assay in vitro and bioinformatics results extremely support the idea that MMP1 is an oncogene promoting cell migration and invasion by EMT in HNSCC.