Sample collection
One hundred sixty-three patients with signs of abdominal pain or burning, nausea, vomiting, frequent burping, bloating, and weight loss with an average age of 51.5 years (ranged from 20 to 83) had undergone endoscopic investigations at Beheshti Hospital in Kashan, Iran, from May 2019 to November 2020. Patients, who received antibiotic therapy three months before endoscopy, including PPI, non-steroidal anti-inflammatory drugs, and clarithromycin, were excluded from the study. Written informed consent was obtained from the patients. In sum, 163 patients, 119 (73%) cases presented with non-ulcer dyspepsia and 44 (27%) cases with peptic ulcer diseases (including four peptic ulcers, five duodenal ulcers, and thirty-five cases with both gastritis and peptic ulcers.
H. Pylori Culture
Gastric biopsy specimens are transferred to the microbiology laboratory in two pieces, one in the Stuart transport medium and the other in the rapid urea medium. The biopsy sample was cultured on Brucella agar enriched with 10% horse serum and 5mg/l trimethoprim, 10 mg/l vancomycin, 5 mg/l amphotericin B, 5 mg/ml in cefsulodin (H. pylori selective supplement SR147) (OXOID, USA). The cultured plates were incubated at 37˚C under microaerophilic conditions (5% O2, 10% CO2, and 85% N2) for 5 to 7 days to obtain a single colony. H. Pylori are detected using gram staining, urease test, catalase test, and oxidase test.
Silver Nanoparticle characterization
Silver Nanoparticle (Ag-NP) with an approximate size of 5 to 8 nm purchased in solution from Pishgaman Iranian Nanomaterials Company, Mashhad, Iran. True density was 10.9 g/cm3. The purity of Ag-NP was 99.99%. Also, the color of Ag-np was black, and Morphology was spherical. Specific surface area (SSA) was ~25-42 m2/g. Figure 1 shows the size distribution report by the intensity measured by Zetasizer Version 6.00 from Malvern Instruments Ltd. Figure 2 illustrated a micrograph of silver nanoparticles obtained by transmission electron microscopy. The XRD pattern of silver nanoparticles showed in Figure 3.
Antimicrobial susceptibility tests
E-test
The pattern of sensitivity and resistance to clarithromycin is determined by the E-test method on enriched Muller Hinton Agar medium with 10% horse serum. The H. pylori culture is prepared with turbidity equivalent to 3 McFarland standard, and after inoculation on the medium, the E-test strips (LIOFIL CHEM, Italy) are placed on the surface of the cultured medium. The plates were incubated at a temperature of 37˚C for 72 hours under microaerophilic conditions. After the incubation period, MIC was determined by the oval aura formed around the strip. If the MIC was ≤1µg/ml, the isolate was sensitive to clarithromycin, and if ≥1µg/ml, the isolate was resistant to clarithromycin (10, 11).
Determination of MIC of silver nanoparticle (Ag-Np)
Determination of MIC was carried out in 96-well microtitre plates using a standard twofold broth microdilution method of the antibacterial agents in Mueller–Hinton broth following Clinical and Laboratory Standards Institute (CLSI) guidelines (11). Broth microdilution was performed in Mueller–Hinton broth supplemented with 5% horse serum. Twofold dilutions of silver nanoparticles ranging from 3.90 to 2000 µg/ml were used. The standardized inoculum was diluted to achieve a final inoculum concentration of approximately 5*105 CFU per well. Each test was performed in triplicate. The microtiter plates were incubated at 37°C under microaerophilic conditions. MICs were read after 72 h of incubation. The MIC was defined as the lowest concentration of silver nanoparticles inhibiting visible growth (11, 12).
Combination assay
Standard powder forms of Clarithromycin (C9742 Sigma-Aldrich Inc., Germany) were stored at 2 to 8°C until use. The stock solutions and serial twofold dilutions of each drug to at least double the MIC were prepared. The MICs of Clarithromycin and silver nanoparticles alone or in combination were determined by broth microdilution method in a 96-well plate by CLSI standards using MH broth supplemented with 5% horse serum. For the double treatment, a 2D checkerboard with twofold dilutions was used to test the different combinations. The checkerboard method was adjusted by twofold dilutions of Ag-Np and clarithromycin for combination treatment. Growth control wells containing the medium were included in each plate. Each test was performed in triplicate. The index of fractional inhibitory concentration (FICs) was calculated as follows: (13, 14)
FIC of Clarithromycin: MIC clarithromycin in combination/ MIC clarithromycin alone
FIC of Ag-Np: MIC Ag-Np in combination/ MIC Ag-Np alone
FICi is calculated as the sum of each FIC and is interpreted as follows:
FICi <0.5, synergy; 0.5 ≤ FICi<1, partial synergy; FICi=1, additive; 2≤FICi<4, indifferent; FICi>4, antagonism
Statistical analysis
The statistical analysis of data was conducted using SPSS software version 16 (SPSS, Inc.). Kolmogorov–Smirnov test was used for all analyzes. Tests such as Chi-square, T-Test, Fischer Exact Test, and Mann Whitney were used for comparison. The p-Values < 0.05 were considered statistically significant.