GOLPH3 Expression Analysis
The RNA-seq transcriptome data and related clinical information were obtained from The Cancer Genome Atlas (TCGA) database (http://ualcan.path.uab.edu/cgi-bin/TCGAExResultNew2.pl?genenam=GOLPH3&ctype=HNSC). There are 520 HNSCC samples and 44 adjacent normal samples included in this study. Statistical analyses were performed using R software v4.0.3 (R Foundation for Statistical Computing, Vienna, Austria), p* < 0.05, p** < 0.01, p*** < 0.001.
Cell Culture
WUS-HN30 and FaDu cells were cultured in DMEM (Gibicol) supplied with 10% fetal bovine serum (FBS, Gibicol) and 1% penicillin - streptomycin (100 μg/mL) at 37°C in a humidified incubator with 5% CO2.
Real-Time qPCR
Total RNA from cells or tissues was extracted using TRIzol reagent (Invitrogen). Quantitative PCR (qPCR) was applied using SYBR Green PCR Master Mix (Takara Bio) on a Quant Studio 3 (Thermo fisher). Relative expression was calculated by normalization to β-actin. The primers for GOLPH3 were designed by online tool Primer Bank (https://pga.mgh.harvard.edu/cgi-bin/primerbank/new_search2.cgi), and the primer sequences (Primer Bank ID: 14140240a1) are as followed:
Forward primer: TGGTAGAAAAGGGTGTACTGACG,
Reverse primer: TGATGAGACGCTGCTTAATGTTG.
Western Blot Assay
25 μg protein per sample extract were separated by 12 % SDS-PAGE. After transferring to a membrane and blocking, the primary antibodies were incubated overnight at 4 ℃. After incubation with the respective secondary antibodies for 1 h at room temperature, the protein bands were visualized using enhanced chemiluminescence reagents (Millipore). Antibodies used in the experiment included rabbit polyclonal antibody GOLPH3 (ab236296, Abcam), mouse monoclonal antibody α-Tubulin (YM3035, Immunoway) and Goat anti-rabbit/Mouse HRP (HA1001, HA1006, HUABIO).
Colony Formation Assay
About 200 cells per well were seeded and incubated for 14 days. The colonies were fixed using 100% methanol for 10 min at room temperature and stained with 0.1% crystal violet for 20 min at room temperature.
Trans-Well Assay
Migration assessed using Trans-well plate. About 5 × 104 cells were resuspended in 250 μL of serum free medium in the upper chamber (8-μm pore size, Corning) while the lower chambers were filled with 750 μL of complete medium. After incubating for 24 h at incubator, the upper chambers were fixed with 100% methanol for 10 min and stained with 0.1% crystal violet at room temperature. The number of transmembrane cells was calculated under a microscope at three random perspectives (Nikon).
Wound Healing Assay
FaDu cells were seeded into the 6-well plate. After incubation for overnight, the cell density reached 100%. Equal wounds were made by 10 μL tips. The images of wound were obtained under a microscope (Nikon) at 100 × magnification.
Cell Counting Kit-8 (CCK-8) Assay
500 cells per well were seeded into 96-well plates. The viability of cells was determined using a CCK-8 assay (Bimake) everyday by measuring the absorbance at 450 nm (BioTek). The absorbance was normalized to the baseline.
Immunohistochemistry (IHC)
Tissue sample was fixed in 4% neutral formaldehyde solution for 48 hours, then embedded in paraffin, section, dewaxing, and antigen retrieval, and the rest of steps were completed according to the immunohistochemical protocol [26]. The images were collected by light microscope (200 ×, Nikon). Antibodies used in the experiment included rabbit polyclonal antibody GOLPH3 (ab236296, Abcam), Donkey anti rabbit HRP (bs-0295D, BIOSS).
Statistical Analysis
Statistical analysis was performed using SPSS version 16.0 (SPSS Inc., Chicago, IL, USA). The results of data are displayed as the mean ± SD. Student’s t - test was applied to determine the difference in data. All experiments were repeated at least three times. *p < 0.05, **p < 0.01, ***p < 0.001.
Enrichment Analysis and Correlation analysis
The genes that positively correlated with GOLPH3 in HNSC were gathered from UALCAN database (http://ualcan.path.uab.edu/cgi-bin/TCGAExCorrel.pl?genenam=GOLPH3&cancer=HNSC). Enrichment analysis was performed by Metascape online (https://metascape.org/gp/index.html#/reportfinal/t3o8aos2t). p < 0.01 and an enrichment factor > 1.5 indicate statistical significance of the results. Correlation analysis was performed by GEPIA2 online (http://gepia2.cancer-pku.cn/#correlation).