1 SCN5A correlation analysis and GO, KEGG analysis
Our previous studies have shown that the expression of SCN5A in TNBC patients is significantly higher than that in other types of breast cancer. And the literature shows that SCN5A is related to the proliferation, migration, and invasion of breast cancer cells. Therefore, in order to find the diagnosis and treatment targets of breast cancer, explore the differentially expressed genes related to SCN5A, analyze the RNA expression of the transcriptome of breast cancer patients in the TCGA database, and screen for differences expressed genes in breast cancer tissues and normal breast tissues.
The breast cancer related data were downloaded from the TCGA database, and the genes differentially expressed in breast cancer tissue and normal breast tissue and related to SCN5A were screened for GO and KEGG analysis (Fig. 2, Table 1). 8 related signal pathways were enriched through KEGG analysis, including the signal pathways related to cell proliferation, Cell Cycle pathway, G1 to S cell cycle pathway, FAK/PI3K/AKT/mTOR pathway, and MAPK pathway, TGF-β, Ras and pathways related to cell migration and invasion include EMT, Integrin, TGF-β pathway, FAK/PI3K/AKT/mTOR pathway, and MAPK pathway.
Table 1
The signaling pathway related genes
| Signaling Pathway(n = the number of genes) |
Proliferation related | G1 to S cell cycle control (n = 21) | Cell Cycle (n = 32) | FAK/PI3K/AKT/mTOR (n = 44) |
MAPK (n = 27) | TGF-β (n = 26) | Ras (n = 24) |
Migration and invasion related | EMT (n = 24) | Integrin pathway (n = 19) | TGF-β (n = 26) |
FAK/PI3K/AKT/mTOR (n = 44) | MAPK (n = 27) | |
2 SCN5A differentially expressed in breast cancer cells.
In order to analyze the expression of SCN5A in breast cancer cells, the RNA expression data ofbreast cancer cells was downloaded based on the CCLE database. The results showed that there was no significant difference in the mRNA expression of SCN5A in Luminal A-type, Luminal B-type, and Her-2-type cells. The mRNA expression of SCN5A in TNBC-type cells was higher than that in Her-2-type cells, but there was no statistical difference between TNBC type cells and the other two types of cells (Fig. 3A). From the downloaded data, the data of three breast cancer cells used in our laboratory were screened, and the mRNA expression of SCN5A in these three cells was analyzed (Fig. 3B). The mRNA expression of SCN5A in MDA-MB-231 cells was significantly higher than that in MCF-7 and SK-BR-3 cells.
Further analyzed the expression of NaV1.5 encoded by SCN5A in MDA-MB-231, MCF-7, SK-BR-3 cells. The whole cell proteins of these three cells were extracted and Western Blot was performed to analyze the expression of NaV1.5 in these three cells. The results showed that the protein expression of NaV1.5 in MDA-MB-231 cells was significantly higher than that of the other two cells (Fig. 3C). The results of immunocytochemistry showed that the expression of NaV1.5 in MDA-MB-231 was significantly higher than that in MCF-7 (Fig. 3D). In conclusion, mRNA and protein expressions of SCN5A were higher in MDA-MB-231.
3 BmK rAGAP suppressed proliferation, migration, and invasion of MDA-MB-231 cells
BmK rAGAP is a sodium channel-like scorpion venom polypeptide, which has been shown to have anti-tumor activity. In order to study the effect of BmK rAGAP on breast cancer cells, this study analyzed the effect of BmK rAGAP on cell proliferation, migration, and invasion through MTT colorimetric assay, wound healing assay, and transwell assay. Firstly, BmK rAGAP significantly inhibited the proliferation of MDA-MB-231. Prolonging the action time of BmK rAGAP, the IC50 value gradually decreased (Fig. 4A).
In this study, determined the inhibitory concentration value of BmK rAGAP (Fig. 4B). Under the same action time, the greater the concentration of BmK rAGAP, the greater the inhibition rate of cell proliferation. BmK rAGAP inhibited cell proliferation in a dose-dependent manner. At the same dose, the longer the action time of BmK rAGAP, the greater the degree of inhibition of cell proliferation. The effect of BmK rAGAP on the viability of MDA-MB-231 cells after 48h was determined (Fig. 4C). The results showed that BmK rAGAP had no effect on cell viability at concentrations of 2.5, 5, 10, 20µM, but at a concentration of 40µM, cell viability decreased remarkably.
Secondly, BmK rAGAP significantly inhibited the migration of MDA-MB-231. To determine the effect of BmK rAGAP on the migration of MDA-MB-231 cells, a wound healing assay was used to determine the effect of BmK rAGAP on the migration of MDA-MB-231 after 24 hours (Fig. 4D, E). The results of wound healing assay showed that BmK rAGAP significantly inhibited the migration of MDA-MB-231. The transwell assay was used to determine the effect of BmK rAGAP on migration. The results showed that after BmK rAGAP was treated for 24 hours, the migration rate decreased significantly (Fig. 4F, G). The inhibitory effect on cell migration was enhanced after the treatment time was extended to 48h (Fig. 4H, I).
Finally, BmK rAGAP significantly inhibited the invasion of MDA-MB-231. The transwell assay determined the effect of BmK rAGAP on the invasion of MDA-MB-231. The results showed that BmK rAGAP can significantly inhibit the invasion of MDA-MB-231. After BmK rAGAP was treated for 24 hours, the cell invasion rate decreased in a dose-dependent manner (Fig. 4J, K). And the inhibitory effect on cell invasion was weakened when the treatment time was 48h (Fig. 4L, M). In conclusion, BmK rAGAP significantly suppressed proliferation, migration, and invasion of MDA-MB-231 cells.
4 BmK rAGAP decreased the [Na+]i and inhibited the mRNA and protein expression of SCN5A in MDA-MB-231 cells.
BmK rAGAP suppressed proliferation, migration, and invasion of MDA-MB-231 cells. In order to investigate the mechanism of BmK rAGAP, this study treated MDA-MB-231 cells with different concentrations of BmK rAGAP to observe the intracellular [Na+]i, as well as the SCN5A mRNA and protein expression. MDA-MB-231 cells which in the logarithmic growth phases were cultured in medium containing different concentrations of BmK rAGAP for 24 and 48 hours, and the intracellular [Na+]i was detected by fluorescence dual-wavelength colorimetry. The results showed that the intracellular [Na+]i decreased significantly (Fig. 5A, B). RT-PCR was used to detect the mRNA expression of SCN5A in the cells. Inoculate MDA-MB-231 into a culture dish, and different concentrations of BmK rAGAP were added, continue to culture the cells for 24 and 48 hours, and then the total cell RNA was extracted. The results showed that the mRNA expression of SCN5A in MDA-MB-231 was significantly decreased (Fig. 5C, D).
Western Blot was used to analyze the effect of BmK rAGAP on the expression of NaV1.5. After adding different concentrations of BmK rAGAP for 24 and 48 hours, the whole cell protein was extracted and the expression of NaV1.5 was determined. The results showed that BmK rAGAP could significantly reduce the NaV1.5 expression (Fig. 5E). In summary, BmK rAGAP decreased the intracellular [Na+]i and inhibited the mRNA and protein expression of SCN5A in MDA-MB-231. The literatures show that SCN5A is related to cell proliferation, migration, and invasion phenotypes. Therefore, it is speculated that BmK rAGAP may affect the proliferation, migration, and invasion of MDA-MB-231 by inhibiting the expression of SCN5A.
5. The effect of BmK rAGAP on the expression of pathway proteins in MDA-MB-231 cells.
Based on the SCN5A-related genes and related signal pathways obtained from the above TCGA database analysis, Western Blot analysis of pathway proteins was performed. MDA-MB-231 cells were treated with BmK rAGAP (0, 2.5, 5, 10 µmol/L) for 48h, the whole cell protein was extracted and then Western Blot was performed to determine the expression of pathway proteins in the cells (Fig. 6).
The results showed that BmK rAGAP can increase the expression of E-cadherin and Vimentin, reduce the expression of MMP-2 protein but BmK rAGAP promotes the expression of p-ERK. BmK rAGAP has no effect on the expression of AKT, but significantly reduces the expression of p-AKT. In addition, BmK rAGAP promoted the expression of P53 protein and p-p38 MAPK. It is speculated that BmK rAGAP may affect the proliferation of MDA-MB-231 through AKT and p38 MAPK pathways. And it may affect the migration and invasion of MDA-MB-231 through EMT.