Bai, R., Ma, F.W., Liang, D., Zhao, X., 2009. Phthalic acid induces oxidative stress and alters the activity of some antioxidant enzymes in roots of Malus prunifolia. J. Chem. Ecol. 35, 488-494.
Caleronieto, F., Pietro, A.D., Roncero, M.I.G., Hera, C. 2007. Role of the transcriptional activator xlnr of fusarium oxysporum in regulation of xylanase genes and virulence. Mol. plant-microbe interact. 20(8): 977-985.
Celar, F., 2000. Cucurbit diseases. Sodobno Kmetijstvo, 33, 162–165.
Chen, X., Mao, X.Z., Huang, J.J., Dang, Y., Wu, J.M., Dong, S., Kong, L., Gao, G., Li, C.Y., Wei, L.P. 2011. Kobas 2.0: a web server for annotation and identification of enriched pathways and diseases. Nucl. Acids Res. 39: 316-322.
Conesa, A., Gotz, S., Garcia-Gomez, J.M., Terol, J., Talon, M., Robles, M. 2005. Blast2go: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 21(18): 3674-3676.
Da Silva, M.P., 2010. Interactions between lesion nematodes and corn pathogens. Ames, Iowa.
Ding, M., Zhu, Q., Liang, Y., Li, J., Fan, X., Yu, X., He, F., Xu, H., Liang, Y., Yu, J.F. 2017. Differential roles of three FgPLD genes in regulating development and pathogenicity in Fusarium graminearum. Fungal Genet. Biol. 109: 46-52.
Duan, X., Bi, H.G., Li, T., Wu, G.X., Li, Q.M., Ai, X.Z. 2017. Root characteristics of grafted peppers and their resistance to Fusarium solani. Biol Plantarum 61(3): 579-586.
Franke-Whittle, I.H., Manici, L.M., Insam, H., Stres, B., 2015. Rhizosphere bacteria and fungiassociated with plant growth in soils of three replanted apple orchards. Plant Soil 395: 317-333.
Gao, X.B., Zhao, F.X., Shen, X., Hu, Y.L., Hao, Y.H., Yang, S.Q., Su L.T., Mao, Z.Q., 2010. Effects of cinnamon acid on respiratory rate and its related enzymes activity in roots of seedlings of Malus hupehensis Rehd. Agri. Sci. China 9, 833-839.
Garcia-Maceira, F.I., Di Pietro, A., Huertas-Gonzalez, M.D., Ruiz-Roldan, M.C., Roncero, M.I.G. 2001. Molecular characterization of an endopolygalacturonase from Fusarium oxysporum expressed during early stages of infection. Appl. Environ. Microbiol. 67(5): 2191-2196.
Göhre, V., Robatzek, S. 2008. Breaking the barriers: microbial effector molecules subvert plant immunity. Annu. Rev. Phytopathol. 46(1): 189-215.
Gosch, C., Halbwirth, H., Stich, K., 2010. Phloridzin: biosynthesis, distribution and physiological relevance in plants. Phytochemistry 71, 838–843.
Hanke, T., Noh, K., Noack, S., Polen, T., Bringer, S., Sahm, H., Wiechert, W., Bott, M. 2013. Combined fluxomics and transcriptomics analysis of glucose catabolism via a partially cyclic pentose phosphate pathway in gluconobacter oxydans 621h. Appl. Environ. Microb. 79(7): 2336-2348.
Hibar, K., Daami-Remadi, M., Hamada, W., EI-Mahjoub, M., 2006. Bio-fungicides as an alternative for tomato Fusarium crown and root rot control. Tunis. J. Plant Prot. 1, 19–29.
Hofmann, A., Wittenmayer, L., Arnold, G., Schieber, A., Merbach, W., 2009. Root exudation of phloridzin by apple seedlings (Malus x domestica Borkh.) with symptoms of apple replant disease. J. Appl. Bot. Food Qual. 82, 193–198.
Hou, W., Mu, J., Li, A., Wang, H., Kong, L. 2015. Identification of a wheat polygalacturonase-inhibiting protein involved in Fusarium head blight resistance. Eur. J. Plant Pathol. 141(4): 731-745.
Ju, R.C., Zhao, Y.H., Li, J.Y., Jiang, H.X., Liu, P., Yang, T., Bao, Z.Z., Zhou, B.Q., Zhou, X.Y., Liu, X.L., 2014. Identification and evaluation of a potential biocontrol agent, Bacillus subtilis, against Fusarium sp. in apple seedlings. Ann. Microbiol. 64, 377–383.
Kelderer, M., Manici, L.M., Caputo, F., Thalheimer, M. 2012. Planting in the‘inter-row’to overcome replant disease in apple orchards:a study on the effectiveness of the practice based on microbial indicators. Plant Soil 357: 381–393.
Klopfenstein, D.V., Liangsheng, Z., Pedersen, B.S., Ramírez Fidel, Alex, W.V., Naldi Aurélien, Mungall, C.J., Yunes, J.M., Botvinnik Olga, Weigel Mark, Dampier Will, Dessimoz Christophe, Flick Patrick, Tang, H.B. 2018. Goatools: a python library for gene ontology analyses. Sci. Rep. 8(1): 10872.
Laurent, A.S., Merwin, I.A., Thies, J.E., 2008. Long-term orchard groundcover management systems affect soil microbial communities and apple replant disease severity. Plant Soil 304, 209-225.
Machón, P., Pajares, J.A., Diez, J.J., Alves-Santos, F.M., 2006. Influence of the ectomycorrhizal fungus Laccaria laccata on pre-emergence, post-emergence and late damping-off by Fusarium oxysporum and F. verticillioides on Stone pine seedlings. Symbiosis 42, 153–160.
Manici, L., Ciavatta, C., Kelderer, M., Erschbaumer, G., 2003. Replant problems in South Tyrol: role of fungal pathogens and microbial population in conventional and organic apple orchards. Plant Soil 256: 315-324.
Manici, L., Kelderer, M., Franke-Whittle, I., Rühmer, T., Baab, G., Nicoletti, F., Caputo, F., Topp, A., Insam, H., Naef, A. 2013. Relationship between root-endophytic microbial communities and replant disease in specialized apple growing areas in Europe. App. Soil Ecol. 72: 207–214.
Mazzola, M., 1998. Elucidation of the microbial complex having a causal role in the development of apple replant disease in Washington. Phytopathology 88: 930-938.
Mazzola, M., Manici, L.M., 2012. Apple Replant Disease: role of microbial ecology in cause and control. Annu. Rev. Phytopathol. 50, 45-65.
Nagae M, Parniske M, Kawaguchi M, Takeda N. 2016. The thiamine biosynthesis gene THI1 promotes nodule growth and seed maturation. Plant Physiol. 172(3): 2033-2043.
Petkovsek, M. M., Slatnar, A., Stampar, F., Veberic, R., 2011. Phenolic compounds in apple leaves after infection with apple scab. Biol. Plant. 55, 725–730.
Petkovsek, M. M., Stampar, F., Veberic, R., 2007. Parameters of inner quality of the apple scab resistant and susceptible apple cultivars ( Malus domestica Borkh.). Sci. Hortic. 114(1), 37–44.
Pinto, P.M., Alonso, J.A.P., Fernandez, V.P., Casero, J.J.D., 2006. Fungi isolated from diseased nursery seedlings in Spain. New Forest. 31, 41–56.
Ramamoorthy, V., Raguchander, T., Samiyappan, R., 2002. Enhancing resistance of tomato and hot pepper to Pythium diseases by seed treatment with fluorescent pseudomonads. Eur. J. Plant Pathol. 108, 429–441.
Schoor, L.V., Denman, S., Cook, N.C., 2009. Characterisation of apple replant disease under South African conditions and potential biological management strategies. Sci. Hortic. 119: 153-162.
Silberbach, M., Maier, B., Zimmermann, M., Büchs, J. 2003. Glucose oxidation bygluconobacter oxydans: characterization in shaking-flasks, scale-up and optimization of the ph profile. Appl. Microbiol. Biot. 62(1): 92-98.
Steinkellner, S., Mammerler, R., Vierheilig, H., 2008. Germination of Fusarium oxysporum in root exudates from tomato plants challenged with different Fusarium oxysporum strains. Eur. J. Plant Pathol. 122, 395–401.
Tewoldemedhin, Y.T., Mazzola, M., Botha, W.J., Spies, C.F.J., McLeod, A., 2011b. Characterization of fungi (Fusarium and Rhizoctonia) and oomycetes (Phytophthora and Pythium) associated with apple orchards in South Africa. Eur. J. Plant Pathol. 130, 215–229.
Tewoldemedhin, Y.T., Mazzola, M., Labuschagne, I., McLeod, A., 2011a. A multi-phasic approach reveals that apple replant disease is caused by multiple biological agents, with some agents acting synergistically. Soil Biol. Biochem. 43, 1917–1927.
Tewoldemedhin, Y.T., Mazzola, M., Mostert, L., McLeod, A., 2011c. Cylindrocarpon species associated with apple tree roots in South Africa and their quantification using real-time PCR. Eur. J. Plant Pathol. 129, 637–651.
Wang, G.S., Yin, C.M., Pan, F.B., Wang, X.B., Xing, L., Wang, Y.F., Wang, J.Z., Tian, C.P., Chen, J., Mao, Z.Q., 2018. Analysis of the Fungal Community in Apple Replanted Soil Around Bohai Gulf. Horticultural Plant Journal 4(05): 175-181.
Wang, X., Zhu, X., Tooley, P., Zhang, X. 2013. Cloning and functional analysis of three genes encoding polygalacturonase-inhibiting proteins fromcapsicum annuumand transgenic capgip1 in tobacco in relation to increased resistance to two fungal pathogens. Plant Mol. Biol. 81(4-5): 379-400.
Yan, K., Han, G., Bian, T. 2018. Fusarium solani Infection Depressed Photosystem Performance by Inducing Foliage Wilting in Apple Seedlings. Front. Plant Sci. 9: 497.
Yang, J.I., Ruegger, P.M., McKenry, M.V., Becker, J.O., Borneman, J., 2012. Correlations between root-associated microorganisms and peach replant disease symptoms in a California soil. Plos One 7, e46420.
Yin, C.M., Xiang, L., Wang, G.S., Wang, Y.F., Shen, X., Chen, X.S., Mao, Z.Q., 2017. Phloridzin promotes the growth of Fusarium moniliforme (Fusarium verticillioides). Sci. Hortic. 214: 187–194.
Zhang, J.H., Mao, Z.Q., Wang, L.Q., Shu, H.R., 2007. Bioassay and identification of root exudates of three fruit tree species. J. Integr. Plant Biol. 49, 257-261.
Zhou, K., Hu, L.Y., Li, Y.T.S., Chen, X.F., Zhang, Z.J., Liu, B.B., Li, P.M., Gong, X.Q., Ma, F.W. 2019. Md UGT88F1-mediated phloridzin biosynthesis regulating apple development and Valsa canker resistance. Plant Physiology. 180: 2290-2305.
Zhu, Q., Sun, L., Lian, J., Gao, X., Zhao, L., Ding, M., Li, J., Liang, Y. 2016. The phospholipase c (fgplc1) is involved in regulation of development, pathogenicity, and stress responses in Fusarium graminearum. Fungal Genet. Biol. 97: 1-9.