Plant material
The breeding parents were as follows: japonica WDR cultivars Huhan 3, Huhan 9, Huhan 11, and the early maturing japonica rice cultivar Suhuxiangjing. Control varieties for the evaluation of drought resistance included IR36 and Hanyou 73. Yuanfengzao was the control variety for the evaluation of rice blast resistance. All of these cultivars were provided by the Shanghai Agrobiological Gene Center (SAGC), Shanghai, China.
Genomic DNA extraction and genotyping
Genomic DNA extraction was performed as previously described (Murray and Thompson 1980). The primers used for the genotyping of Pi-ta and Pi-b were synthesized by Sangon Biotech Co., Ltd. (Shanghai, China) (Table 1). The PCR amplification system was 20 μL, which consisted of 2 μL DNA template, 10 μL Taq PCR Master Mix (Tiangen Biotech Co., Ltd., Beijing, China), 1 μL upstream and downstream primers, and 6 μL dd H2O. The reaction program was as follows: pre-denaturation at 95°C for 5 min, 30 cycles at 95°C for 30 s, 55°C for 30 s, 72°C for 1 min, and finally extension at 72°C for 5 min. PCR products (8 μL for each sample) were detected by electrophoresis on a 2.0% agarose gel.
Table 1 Specific primers of rice blast resistance genes
|
Resistance genes
|
Primer name
|
Sequence(5'-3')
|
Product length (bp)
|
Allele
|
Reference
|
Pita
|
YL155
|
AGCAGGTTATAAGCTAGGCC
|
1042bp
|
Resistance
|
Wang et al. 2004
|
YL87
|
CTACCAACAAGTTCATCAAA
|
pita
|
YLI83
|
AGCAGGTTATAAGCTAGCTAT
|
1042bp
|
Susceptible
|
YL87
|
CTACCAACAAGTTCATCAAA
|
Pib
|
Pibdom F
|
GAACAATGCCCAAACTTGAGA
|
365bp
|
Resistance
|
Liu et al. 2008
|
Pibdom R
|
GGGTCCACATGTCAGTGAGC
|
pib
|
Lys145 F
|
TCGGTGCCTCGGTAGTCAGT
|
803bp
|
Susceptible
|
Lys145 R
|
GGGAAGCGGATCCTAGGTCT
|
RGA technology
The process of RGA method was shown in Fig. 1. The segregating generation population (F2-6) was directly seeded on a plastic breeding tray, which was 580 mm×380 mm×50 mm with holes at the bottom. The sowing density was 5 g/tray, and the breeding tray was then placed in the culture basin, which was a 630 mm×450 mm×70 mm stainless steel tray, which could retain water. Moist soil was maintained in the breeding tray, but there was no standing water. The seedling tray was covered with black nylon cloth for 3-5 days of darkening treatment. The nylon cloth was uncovered after the seedlings had evenly emerged. When the first fully expanded leaf was shown, the seedlings were sprayed with 600-fold diluted paclobutrazol to cultivate short and strong seedlings. During this period, the excess tillers were cut out manually, with only the main stem retained on each seedling. The temperature and humidity settings in seedling stage were as follows: temperature of 28°C (6:00-19:00), 25°C (19:00-6:00 of the next day), and relative humidity of 80%.
The 25-day-old rice seedlings were grown with a short-day photoperiod (10/14 h of light/dark). The temperature and humidity settings were as follows: temperature of 32°C (7:00-17:00), 28°C (17:00-7:00 of the next day), and relative humidity of 80%. An LED artificial light source was used for the lighting treatment, and each group of LED lamps was composed of white, red, and blue LED lamps with a quantity ratio of 4:1:1. The water layer state of the seedling tray was observed every day. Water was added until the water layer reached a depth of approximately 2.0 cm, and the water was renewed recurrently after the water layer had drained. After the start of short-day treatment, the young panicles were stripped regularly to observe the differentiation process of young panicles. The short-day treatment was terminated when the plants reached the young panicle differentiation stage.
The rice after short-day treatment were screened for water-saving properties and drought resistance, and the individual plants with poor water-saving properties and drought resistance were manually removed from the population. After the screening, the plants were re-irrigated, and the breeding tray was kept moist until the plants had matured. One to two seeds in the upper part of each panicle were then collected, and all the collected seeds were mixed to obtain the next generation. Temperature and humidity for the identification of drought resistance and the growth environment at the later stage were established as follows: temperature of 35°C (6:00-19:00), 28°C (19:00-6:00 of the next day), and relative humidity of 80%.
Evaluation of rice blast resistance
From May to October 2014, leaf and neck blasts were investigated in two blast epidemic areas, Jinggangshan of Jiangxi Province and Jinzhai of Anhui Province, China. Each cultivar was planted in 10 rows with seven plants in each row, repeated three times, and arranged in random blocks. The fertilizer and water management were the same as that in the general fields. Two rows of control varieties were planted around the ridge as protective rows, and one row of control varieties was planted in the operation ditch of the field as an induction cultivar. The blast level was investigated based on the classification standard of grades 0-9 of the International Rice Research Institute (IRRI 2002).
Identification of drought resistance
From May to October 2015, the identification of drought resistance was conducted at the water-saving and drought-resistance identification center of SAGC in Zhuanghang Town, Shanghai, China. Drought and control treatments were established in the experiment. The treatments were repeated three times. Nine rows of plants were planted in each plot with nine plants in each row, and the plant-row spacing was 20 cm × 23 cm. From sowing to stage II of young panicle differentiation, intermittent irrigation was performed in the field to keep the soil wet without retaining a layer of water. Drought stress treatment was conducted at stage II of young panicle differentiation, and the treatment was terminated. Field water management in the early period was restored when all the rolled leaves of drought-sensitive control varieties did not recover for more than 5 days, or the leaf withering rate reached 50% in the morning. The control treatment was established in the adjacent paddy field, and the whole growth period was managed based on conventional cultivation in paddy fields. The yield of plot was measured at the maturity stage, and the drought resistance index was calculated. The identification method for drought resistance was applied as described in the agricultural standard of China (NY/T 2863-2005 Technical specification of identification and evaluation for rice drought resistance).
Determination of rice quality
The rice quality was determined after the harvested and sun-dried rice had been stored at room temperature for 3 months. The indicators included the percentage of brown rice, milled rice, head rice, chalky rice, chalkiness, and grain length (mm), length-width ratio, alkali dissipation value, amylose content (%), and gel consistency (mm). All the indicators were estimated based on the standards of determining the quality of rice (NYT83-2017).
A JSWL rice taste measuring instrument developed by Beijing Dongfu Jiuheng Instrument Technology Co., Ltd. (Beijing, China) and Satake Corporation (Hiroshima, Japan) was used to perform the measurements. The samples of milled rice > 200 g were placed in the sampling tank, and the instrument was adjusted. The setting for japonica rice was utilized to take the measurements. The full score of taste value reported in the instrument was 100. A taste value > 80 indicates good taste; a value of 70-80 indicates slightly good taste; a value of 60-70 indicates average taste; a value of 50-60 indicates slightly bad taste, and a value < 50 indicates bad taste (Zhang et al. 2007).