Mice
Pld−/− mice were generated as previously described [29]. Heterozygous breeders were crossed to generate WT, heterozygous, and knockout littermates, and genotypes were determined by PCR analysis (Supplementary Fig. 1). All experiments were conducted with 10-week-old male Pld−/− mice. All animal experiments were approved by the Institutional Animal Care and Use Committee (IACUC) of Hanyang University (HY-IACUC-20-0233) and were conducted according to relevant guidelines and regulations.
Primary culture of hippocampal neural stem/progenitor cells
All procedures using animals were performed according to the Hanyang University guidelines for the care and use of laboratory animals and were approved by the Institutional Animal Care and Use Committee of Hanyang University (HY-IACUC-18-0028). Pregnant Sprague–Dawley (SD) rats were obtained from Orient Bio Inc. (Seoul, Korea). Whole brains were collected from SD rat embryos at E16.5 (E1 was defined as 12 hours after detection of a vaginal plug). Embryonic hippocampi were mechanically dissected from the brains and placed in ice-cold Ca2+/Mg2+-free HBSS (Gibco), followed by removal of blood vessels and meninges. The hippocampal tissue was incubated with 0.05% trypsin-EDTA at 37°C for 5 − 10 min and dissolved in N2 medium supplemented with 10% (v/v) heat-inactivated FBS. After centrifugation at 200 × g for 5 min, the pelleted cells were gently resuspended in culture medium and plated at 2 × 105 cells on 10-cm culture dishes (Nunc A/S, Roskilde, Denmark) precoated with 15 µg/ml poly-L-ornithine (Sigma-Aldrich) and 1 µg/ml fibronectin (Invitrogen) and incubated at 37°C in a 5% CO2/95% air-humidified incubator. The cells were then cultured for 5 − 6 days in serum-free N2 medium supplemented with 20 ng/ml bFGF. The medium was changed every other day, while the bFGF was supplemented every day to expand the population of proliferative stem/precursors. Cell clusters generated by stem/precursor cell proliferation were dissociated in 0.05% trypsin-EDTA and plated at 6 × 104 cells per well on coated 24-well plates, 1×106 cells per well on coated 6-well, or 2×106 cells on coated 6-cm culture dishes. Passage 1 neural stem/precursor cells were used in all experiments.
Construction of small hairpin RNA (shRNA)-expressing vectors and lentivirus production
For PLD1 silencing, the pLB lentiviral vector (Addgene, Cambridge, MA, USA) containing shRNA was constructed using the Pld1 shRNA target sequences (sense: 5′-GAATTCACATGGCAAGTTAAG-3′ and antisense: 5′-CTTAACTTGCCAT GTGAATTC-3′). The annealed oligonucleotide was digested at XhoI and HpaI restriction sites, and the restriction product was inserted into the pLB vector digested with the same restriction enzymes. The final plasmid construct, pLB-shPld1-GFP, was verified by sequencing analysis. Lentivirus was produced by co-transfection of control empty shRNA vector or pLB-shPld1-GFP with lentiviral packaging plasmids pLP1, pLP2, and pLP/VSVG (Invitrogen) and transfected into 293T cells (ATCC, Manassas, VA, USA) using Lipofectamine 3000 (Invitrogen). Supernatants containing viral particles were harvested 48 h after 293T cell transfection. For viral transduction, prepared hippocampal NSPCs were incubated with the viral suspension (4×106 particles/ml) containing polybrene (1 µg/ml; Sigma-Aldrich) for 24 h, followed by transfer to bFGF-supplemented N2 medium.
Transient transfection of hippocampal NSPCs
NSPCs were transfected using an AMAXA Nucleofector™ Kit V (#VCA-1003, AMAXA Biosystems, Köln, Germany) according to the manufacturer’s instructions, except for the following modifications. For each nucleofection sample, 5 × 106 cells were centrifuged at 300 × g for 5 min and resuspended in 100 µl of pre-warmed AMAXA Nucleofector solution. Each 100 µl of cell suspension was mixed with either 10 µg of pCMV6-Entry (empty vector) or pCMV6-Entry encoding MycDDK-tagged rPld1 complementary DNA (cDNA) (pCMV6-Entry-rPld1-MycDDK) (#RR213792, OriGene Technologies, Rockville, MD, USA). The DNA-cell suspensions were immediately transferred into AMAXA nucleofection cuvettes and electroporated using the Nucleofector program G-013 in the nucleofection device (Nucleofector I). The pLB vector or pLB-shPld1-GFP was introduced into cells for knockdown experiments using the AMAXA Nucleofector Kit V.
RNA interference
For Stat3 knockdown experiments, Stat3 siRNA (5′-CUGUCUUUAGGCUGAUCAU-3′, #25125-1) was purchased from Bioneer (Daejeon, Korea). Negative control siRNA (ON-TARGET plus non-targeting pool, #D-001810-10-20) was purchased from Dharmacon (Lafayette, CO, USA). Transient siRNA transfections were performed in 6-well plates by introducing 150 nM Stat3 siRNA or negative control siRNA into cells using Lipofectamine RNAiMAX transfection reagent (Invitrogen), according to the manufacturer’s protocol.
RNA extraction and reverse transcription-quantitative polymerase chain reaction (RT-qPCR)
Total RNA was extracted from cultured cells using NucleoZOL reagent (Macherey-Nagel, Düren, Germany). To prepare cDNA by qPCR, purified total RNA (300 ng) was reverse transcribed using GoScript™ Reverse Transcriptase and random primers (Promega Corporation, Madison, WI, USA). The qPCR was performed using a SensiFAST™ SYBR No-ROX Kit (Bioline, London, UK) on a CFX Connect™ Real-Time PCR Detection System (Bio-Rad, Hercules, CA, USA). The primers used for RT-qPCR were as follows: Rat Gfap sense: 5′-GAGATCGCCACCTACAGGAA-3′ and antisense: 5′-GCTCCTGCTTCGACTCCTTA-3′, Rat Gapdh sense: 5′-GGCATTGCTCTCAATGACAA-3′ and antisense: 5′-AGGGCCTCTCTCTTGCTCTC-3′. Thermocycling conditions were 95°C for 10 min, followed by 40 cycles of 95°C for 15 s and 60°C for 1 min. Each sample was tested in duplicate, and at least three samples obtained from independent experiments were analyzed. Relative quantification was carried out using the 2−ΔΔCt method. Relative gene expression was normalized to the that of the internal control, GAPDH.
Western blot assays
Cells were lysed in ice-cold RIPA lysis buffer (50 mM Tris-HCl pH 7.5, 150 mM NaCl, 0.1% (v/v) NP-40, 0.25% (v/v) sodium deoxycholate) supplemented with 1× Complete EDTA-free Protease Inhibitor Cocktail (Roche Diagnostics, Indianapolis, IN, USA) and 1× Halt™ Phosphatase Inhibitor Cocktail (Thermo Fisher Scientific, Waltham, MA, USA). Protein samples (20–30 µg) were loaded on 8–10% SDS–polyacrylamide gels and then transferred to nitrocellulose membranes (Amersham Pharmacia Biotech, Amersham, UK) after electrophoresis. After blocking with 5% (w/v) non-fat dried milk for 1 h, membranes were incubated with primary antibodies against rabbit polyclonal anti-PLD1 (1:500 dilution), mouse monoclonal anti-GFAP (1:500 dilution), rabbit polyclonal anti-phospho-STAT3 (Tyr 705) (1:1000 dilution), mouse monoclonal anti-STAT3 (1:1000 dilution), mouse monoclonal anti-phospho-AURKA (Thr 288) (1:200 dilution), mouse monoclonal anti-AURKA (1:200 dilution), rabbit polyclonal anti-phospho-FAK (Tyr 397) (1:1000 dilution), rabbit polyclonal anti-FAK (1:1000 dilution), and rabbit polyclonal anti-calnexin antibody (1:2000 dilution), followed by HRP-conjugated secondary antibodies anti-rabbit IgG (#111-035-003) and anti-mouse IgG (#115-035-003) (1:10,000 dilution, Jackson ImmunoResearch, West Grove, PA, USA). Since calnexin is widely used as a house keeping gene [30–32] and is stably expressed in rat hippocampal neural precursor cells in this study, it was used as loading control. Specific bands were detected by an enhanced chemiluminescence western blotting detection system (Thermo Fisher Scientific, Rockford, IL, USA) and were quantified using Quantity One® software (Bio-Rad).
Immunofluorescence on cultured cells
Cells were fixed with 4% (w/v) paraformaldehyde in phosphate-buffered saline (PBS) for 20 min and then washed three times with 0.1% (w/v) BSA in PBS at room temperature. After blocking with 10% (v/v) normal goat serum in 0.1% BSA in PBS containing 0.3% (v/v) Triton X-100 for 1 h at room temperature, cells were immunostained with rabbit polyclonal anti-GFAP primary antibody (1:500 dilution) at 4°C overnight. Subsequently, cells were washed three times with PBS and then labeled with 1:2000 dilution of Alexa Fluor® 594-conjugated goat anti-rabbit IgG (H + L) secondary antibody for 1 h before mounting with Vectashield mounting medium (Vector Laboratories, Burlingame, CA, USA) containing 4,6-diamidino-2-phenylindole (DAPI). Immunoreactive cells were detected and photographed using an epifluorescence microscope (Nikon Instruments, Melville, NY, USA) at magnifications ranging from 20× to 40×.
Immunofluorescence in tissue sections
Mice were perfused with 4% paraformaldehyde in PBS and processed for histology. Brains were removed and fixed in 4% paraformaldehyde for 24 h at 4°C and embedded in paraffin. For immunofluorescence labeling, serial sections (5 µm/section) were deparaffinized. They were then incubated in 10% normal goat serum (NGS) for 1 h at room temperature for blocking before primary antibody staining. Specimens were stained with mouse monoclonal anti-PLD1 primary antibody (1:100 dilution) or rabbit polyclonal GFAP primary antibody (1:200 dilution) at 4°C overnight. To detect primary antibodies, specimens were incubated for 1 h with 1:1000 dilution of Alexa Fluor® 488-conjugated goat anti-mouse IgG (H + L) secondary antibody or 1:1000 dilution of Alexa Fluor® 594-conjugated goat anti-rabbit IgG (H + L) secondary antibody. After three washes in PBS, they were mounted using Vectashield mounting medium. Images were acquired by confocal microscopy (Leica Microsystems, Wetzlar, Germany).
Cell counting and analysis
Cells were cultured on coverslips in 24-well plates, fixed with 0.1% (w/v) picric acid/PBS containing 4% paraformaldehyde, and incubated overnight at 4°C with an anti-GFAP antibody (1:500 dilution). After incubation with a 1:2000 dilution of Alexa Fluor® 594-conjugated goat anti-rabbit IgG secondary antibody, cells were mounted on slides with Vectashield. Cell counting was performed in a microscopic field, using an eyepiece grid at a final magnification of 200× or 400×. GFAP-positive and DAPI-stained cells were counted in 5–10 (fractionator) microscope fields of each culture slide. For each condition, cells from four slides were stained and counted, and each experiment was repeated at least three times. Photos of the cells were captured with an epifluorescence microscope (Nikon Instruments).
Statistical analysis
Data were statistically analyzed using GraphPad Prism 8.0. The unpaired t-test was when comparing two groups. One-way ANOVAs followed by Tukey’s multiple comparisons post hoc test were used when comparing more than two groups. All quantitative data are expressed as mean ± standard error of the mean (SEM), and values of p < 0.05 were considered statistically significant. In each experiment, all measurements were performed at least in triplicate, and data consistency was observed in repeated experiments.