[1] Bohnert HJ, Gong QQ, Li PH, Ma SS. Unraveling abiotic stress tolerance mechanisms-getting genomics going. Current Opinion in Plant Biology. 9 (2006) 180-188.
[2] Hunter H. Protein kinases and phosphatases: the yin and yang of protein phosphorylation and signaling. Cell. 80 (1995) 225-236.
[3] Hrabak EM, Chan CW, Gribskov M, Harper JF, Choi JH, Halford N, Kudla J, Luan S, Nimmo HG, Sussman MR, Thomas M, Walker-Simmons K, Zhu JK, Harmon AC. The Arabidopsis CDPK-SnRK superfamily of protein kinases. Plant Physiol. 132 (2003) 666-680.
[4] Halford NG, Hardie DG. SNF1-related protein kinases: Global regulators of carbon metabolism in plants? Plant Molecular Biology. 37 (1998) 735-748.
[5] Celenza JL, Carlson M. A yeast gene that is essential for release from glucose repression encodes a protein kinase. Science. 233 (1986) 1175-1180.
[6] Kulik A, Wawer I, Krzywi ´nska E, Bucholc M, Dobrowolska G. SnRK2 Protein Kinases—Key Regulators of Plant Response to Abiotic Stresses. OMICS: A Journal of Integrative Biology. 15 (2011) 859-872.
[7] Albrecht V, Ritz O, Linder S, Harter K, Kudla J. The NAF domain defines a novel protein-protein interaction module conserved in Ca2+-regulated kinases. EMBO Journal. 20 (2011) 1051-1063.
[8] Masaru O, Yan Y, Ursula H, Zhu JK. A novel domain in the protein kinase SOS2 mediates interaction with the protein phosphatase 2C ABI2. Proc Natl Acad Sci USA. 100 (2003) 11771-11776.
[9] Purcell PC, Smith AM, Halford NG. Antisense expression of a sucrose non-fermenting-1-related protein kinase sequence in potato results in decreased expression of sucrose synthase in tubers and loss of sucrose-inducibility of sucrose synthase transcripts in leaves. Plant Journal. 14 (1998) 195-202.
[10] Ramon M, Dang TVT, Broeckx T, Hulsmans S, Crepin N, Sheen J, Rolland F. Default Activation and Nuclear Translocation of the Plant Cellular Energy Sensor SnRK1 Regulate Metabolic Stress Responses and Development. Plant Cell. 31 (2019) 1614-1632.
[11] Halford NG, Hey SJ. Snf1-related protein kinases (SnRKs) act within an intricate network that links metabolic and stress signalling in plants. Biochemical Journal. 419 (2009) 247-259.
[12] Maszkowska J, Dębski J, Kulik A, Kistowski M, Bucholc M, Lichocka M , Klimecka M, Sztatelman O, Szymanska KP, Dadlez M, Dobrowolska G. Phosphoproteomic analysis reveals that dehydrins ERD10 and ERD14 are phosphorylated by SNF1-related protein kinase 2.10 in response to osmotic stress. Plant Cell And Environment. 42 (2019) 931-946.
[13] Diédhiou CJ, Popova OV, Dietz KJ, Golldack D. The SNF1-type serine-threonine protein kinase SAPK4 regulates stress-responsive gene expression in rice. BMC Plant Biology. 8 (2008) 49.
[14] Zhang HY, Jia HF, Liu GS, Yang SN, ZHANG ST, Yang YX, Yang PP, Cui H. Cloning and characterization of SnRK2 subfamily II genes from Nicotiana tabacum. Molecular Biology Reports. 41 (2014) 5701-5709.
[15] Anna-Chiara M, Sylvain M, Alain V, Francesca F, Giraudat J. Arabidopsis OST1 Protein Kinase Mediates the Regulation of Stomatal Aperture by Abscisic Acid and Acts Upstream of Reactive Oxygen Species Production. Plant Cell. 14 (2002) 3089-3099.
[16] Ali A, Kim JK, Jan M, Khan HA, Khan IU, Shen MZ, Park J, Lim CJ, Hussain S, Bae, D, Wang K, Chung WS, Rubio V, Lee SY, Gong ZZ, Kim WY, Bressan RA, Pardo JM, Yun DJ. Rheostatic Control of ABA Signaling through HOS15-Mediated OST1 Degradation. Molecular Plant. 12 (2019) 1447–1462.
[17] Kim KN, Lee JS, Han H, Choi SA, Go SJ, Yoon IS. Isolation and characterization of a novel rice Ca2+-regulated protein kinase gene involved in responses to diverse signals including cold, light, cytokinins, sugars and salts. Plant Molecular Biology. 52 (2003) 1191-1202.
[18] Guo Y, Xiong L, Song CP, Gong D, Halfter U, Zhu JK. A calcium sensor and its interacting protein kinase are global regulators of abscisic acid signaling in Arabidopsis. Developmental Cell. 3 (2002) 233-244.
[19] Liu J, Ishitani M, Halfter U, Kim CS, Zhu JK. The Arabidopsis thaliana SOS2 gene encodes a protein kinase that is required for salt tolerance. Proc Natl Acad Sci USA. 97 (2000) 3730-3734.
[20] Ma QJ, Sun MH, Kang H, Lu J, You CX, Hao YJ. A CIPK protein kinase targets sucrose transporter MdSUT2.2 at Ser (254) for phosphorylation to enhance salt tolerance. Plant Cell And Environment. 42 (2019) 918-930.
[21] Ma QJ, Sun MH, Lu J, Kang H, You CX, Hao YJ. An apple sucrose transporter MdSUT2.2 is a phosphorylation target for protein kinase MdCIPK22 in response to drought. Plant Biotechnology Journal. 17 (2019) 625-637.
[22] Chen L, Ren F, Zhou L, Wang QQ, Zhong H, Li XB. The Brassica napus calcineurin B-like 1/CBL-interacting protein kinase 6 (CBL1/CIPK6) component is involved in the plant response to abiotic stress and ABA signalling. Journal of Experimental Botany. 63 (2012) 6211-6222.
[23] Chalhoub B, Denoeud F, Liu S, Parkin IAP, Tang H, Wang X, Chiquet J, Belcram H, Tong C, Samans B, et al. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science 345 (2014) 950-953.
[24] Sun FM, Fan GY, Hu Q, Zhou YM, Guan M, Tong CB, Li JN. The high-quality genome of Brassica napus cultivar ‘ZS11’ reveals the introgression history in semi-winter morphotype. The Plant Journal. 92 (2017) 452-468.
[25] Zou J, Mao LF, Qiu J, Wang M, Lei J, Wu DY, He ZS, Chen MH, Shen YF, Shen EH, Huang YJ, Li RY, Hu DD, Shi L, Wang K, Zhu QH, Ye CY, Ian B, Graham JK, Meng JL, Fan LJ. Genome-wide selection footprints and deleterious variations in young Asian allotetraploid rapeseed. Plant Biotechnology Journal. 17 (2019) 1998-2010.
[26] Letunic I, Doerks T, Bork P. SMART 7: Recent updates to the protein domain annotation resource. Nucleic Acids Reserch. 40 (2012) 302-305.
[27] Marchler-Bauer A, Lu S, Anderson JB, Chitsaz F, Derbyshire MK, DeWeese-Scott C, Fong JH, Geer LY, Geer RC, Gonzales NR, Gwadz M, Hurwitz DI, Jackson JD, Ke Z, Lanczycki CJ, Lu F, Marchler GH, Mullokandov M, Omelchenko MV, Robertson CL,Song JS, Thanki N, Yamashita RA, Zhang D, Zhang N, Zheng C, Bryant SH. CDD: a Conserved Domain Database for the functional annotation of proteins. Nucleic Acids Research. 39 (2011) 225-229.
[28] Finn RD, Coggill P, Eberhardt RY, Eddy SR, Mistry J, Mitchell AL, Potter SC, Punta M, Qureshi M, Sangradorvegas A. The Pfam protein families database: Towards a more sustainable future. Nucleic Acids Research. 44 (2016) 279-285.
[29] Saitou N, Nei M. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Molecular Biology and Evolution. 4 (1987) 406-425.
[30] Kumar S, Stecher G, Tamura K. MEGA7: Molecular evolutionary genetics analysis version 7.0 for bigger datasets. Molecular Biology and Evolution. 33 (2016) 1870-1874.
[31] Bailey TL, Boden M, Buske FA, Frith M, Grant CE, Clementi L, Ren J, Li WW, Noble WS. MEME SUITE: Tools for motif discovery and searching. Nucleic Acids Res. 37 (2009) 202-208.
[32] Hu B, Jin J, Guo AY, Zhang H, Luo J, Gao G. GSDS 2.0: An upgraded gene feature visualization server. Bioinformatics. 31 (2015) 1296-1297.
[33] Voorrips RE. MapChart: Software for the graphical presentation of linkage maps and QTLs. Journal of Heredity. 93 (2002) 77-78.
[34] Krzywinski M, Schein J, Birol I, Connors J, Gascoyne R, Horsman D, Jones SJ,Marra MA. Circos: an information aesthetic for comparative genomics. Genome Research. 19 (2009) 1639–1645.
[35] Wang Y, Tang H, DeBarry JD, Tan X, Li J, Wang X, Lee T, Jin H, Marler B, Guo H. MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity. Nucleic Acids Research. 40 (2012) 49.
[36] Wang D, Zhang Z, Zhang Z, Zhu J, Yu J. KaKs_Calculator 2.0: a toolkit incorporating gamma-series methods and sliding window strategies. Genomics Proteomics Bioinformatics. 8 (2010) 77-80.
[37] Lescot M, Déhais P, Thijs G, Marchal K, Moreau Y, Yves VDP, Pieree R, Stephane R. Plantcare, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. Nucleic Acids Research. 30 (2002) 325-7.
[38] Zhang YT, Ali U, Zhang GF, Yu LQ, Fang S, Iqbal S, Li HH, Lu SP, Guo L. Transcriptome analysis reveals genes commonly responding to multiple abiotic stresses in rapeseed. Molecular Breeding. 39 (2019).
[39] Chen CJ, Xia R, Chen H, He YH. TBtools, a Toolkit for Biologists integrating various HTS data handling tools with a user-friendly interface. bioRXiv. (2018).
[40] Wu DZ, Liang Z, Yan T, Xu Y, Xuan LJ, Tang J, Zhou G, Lohwasser U, Hua SJ, Wang HY, Chen XY, Wang Q, Zhu L, Maodzeka A, Hussain N, Li ZL, Li XM , Shamsi IH, Jilani G, Wu LD, Zheng HK, Zhang GP, Chalhoub B, Shen LS, Yu H, Jiang LX. Whole-Genome Resequencing of a Worldwide Collection of Rapeseed Accessions Reveals the Genetic Basis of Ecotype Divergence. Molecular Plant. 12 (2019) 30-43.
[41] Xuan LJ, Yan T, Lu LZ, Zhao XZ, Wu DZ, Hua SJ, Jiang LX. Genome-wide association study reveals new genes involved in leaf trichome formation in polyploid oilseed rape (Brassica napus L.). Plant Cell And Environment. 2019.
[42] Holub EB. The arms race is ancient history in Arabidopsis, the wildflower. Nat Rev Genet. 2 (2001) 516.
[43] Kobayashi Y, Yamamoto S, Minami H, Kagaya Y, Hattori T. Differential activation of the rice sucrose nonfermenting1-related protein kinase2 family by hyperosmotic stress and abscisic acid. Plant Cell. 16 (2004) 1163-1177.
[44] Wang LZ, Hu W, Sun JT, Liang XY, Yang XY, Wei SY, Wang XT, Zhou Y, Xiao Q, Yang GX, He GY. Genome-wide analysis of SnRK gene family in Brachypodium distachyon and functional characterization of BdSnRK2.9. Plant Science. 237 (2015) 33-45.
[45] Wang YJ, Yan HF, Qiu ZF, Hu B, Zeng BS, Zhong CL, Fan CJ. Comprehensive Analysis of SnRK Gene Family and their Responses to Salt Stress in Eucalyptus grandis. International Journal of Molecular Sciences. 20 (2019) 11.
[46] Chung BY, Simons C, Firth AE, Brown CM, Hellens RP. Effect of 5’utr intronson gene expression in Arabidopsis thaliana. BMC Genomics. 7 (2006) 120.
[47] Jeffares DC, Penkett CJ, Bähler J. Rapidly regulated genes are intronpoor. Trends Genet. 24 (2008) 375.
[48] Stephen J, Fei N, Juergen E, Zhang Stephen J, Fei N, Juergen E, Zhang S, Dong W, Xue T, Zheng C, Yuan Z. Genome-wide and expression analysis of protein phosphatase 2C in rice and Arabidopsis. BMC Genomics. 9 (2008) 1-21.
[49] Ali GM, Komatsu S. Proteomic analysis of rice leaf sheath during drought stress. Journal of Proteome Research. 5 (2006) 396-403.
[50] Sarda X, Tousch D, Ferrare K, Legrand E, Dupuis J, Casse-Delbart F, Lamaze T. Two TIP-like genes encoding aquaporins are expressed in sunflower guard cells. Plant Journal. 12 (1997) 1103-1111.
[51] Tan WR, Zhang DW, Zhou HP, Zheng T, Yin YH, Lin HH. Transcription factor HAT1 is a substrate of SnRK2.3 kinase and negatively regulates ABA synthesis and signaling in Arabidopsis responding to drought. PLOS Genetics. 14 (2018) .
[52] Nakashima K, Fujita Y, Kanamori N, Katagiri T, Umezawa T, Kidokoro S, Maruyama K, Yoshida T, Ishiyama K, Kobayashi M, Shinozaki K, Yamaguchi-Shinozaki K. Three Arabidopsis SnRK2 Protein Kinases, SRK2D/SnRK2.2, SRK2E/SnRK2.6/OST1 and SRK2I/SnRK2.3, Involved in ABA Signaling are Essential for the Control of Seed Development and Dormancy. Plant and Cell Physiology. 50 (2009) 1345-1363.
[53] Yoshida T, Fujita Y, Maruyama K, Mogami J, Todaka D, Shinozaki K, Yamaguchi-Shinozaki K. Four Arabidopsis AREB/ABF transcription factors function predominantly in gene expression downstream of SnRK2 kinases in abscisic acid signalling in response to osmotic stress. Plant Cell and Environment. 38 (2015) 35-49.