Construct development and AAV production:
AAV.ARE reporter: Synthetic DNA gBlocks were purchased from IDT (Integrated DNA Technologies, Coralville, IA) and contained either wild-type human thioredoxin (Trx) ARE or mutant Trx ARE (oligonucleotide M4)22 positioned upstream of the mini-TK promoter. The ARE promoters drive expression of nuclear-targeted tdTomato23 and the SV40 promoter drives expression of HA-tagged ZsGreen (Takara Bio, San Jose, CA). All components were cloned into an AAV2 backbone (Cell Biolabs, San Diego, CA). The wild-type Trx plasmid was packaged into AAV2 at SignaGen (Fredrick, MD).
AAV.Sncg.Cre, AAV.Vim.Cre and respective control constructs: AAVs were generated that express Cre recombinase and tdTomato. The promoters included either the 1 kb human vimentin (Vim) promoter that was derived from Addgene plasmid #29114 (a gift from Elizabeth Simpson)24 or the 0.66 kb mouse gamma-synuclein (Sncg) promoter (a gift from Yang Hu)25. Astrocytes were targeted with the combination of Vim promoter and a modified AAV6 capsid (ShH10 with an additional Y455F mutation). RGCs were targeted with the combination of Sncg promoter and AAV2 capsid. Control AAVs contained tdTomato without Cre. AAVs were packaged in-house using triple transfection of HEK cells.
AAV.CMV.eGFP and AAV.CMV.Nrf2 constructs: pAAV.CMV.Nrf2 was purchased from Addgene (Watertown, MA; plasmid #67636) and packaged into AAV2/2 at SignaGen (Fredrick, MD). pAAV.CMV.eGFP was purchased from Addgene (plasmid #67634) and packaged into AAV2/2 at SignaGen.
Table 1
Plasmids used to produce AAVs in this study.
Plasmid | AAV nomenclature |
pAAV.pTrx-ARE(WT)-TnSV0HA-zG | AAV2/2.ARE |
pAAV.pCMV.Nrf2 | AAV2/2.Nrf2 |
pAAV.pCMV.eGFP | AAV2/2.eGFP |
pAAV.pSncg.Cre.IRES.tdTomato | AAV2/2.Sncg.Cre |
pAAV.pVimentin.P2A.tdTomato | AAV2/6m.Vim.Cre |
pAAV.pSncg.IRES.tdTomato | AAV2/2.Sncg.tdTom |
pAAV.pVimentin.P2A.tdTomato | AAV2/6m.Vim.tdTom |
ARPE-19 cells: ARPE-19 cells were purchased from ATCC (Manassas, VA) and grown as previously described.26 Cells in complete media were transfected with plasmid DNA mixed with FuGENE HD (Promega, Madison, WI; #E2311) at a ratio of 1:4 (1 mg DNA: 4 ml FuGENE). Eight-well chamber slides and 6-well plates were transfected with 200 ng and 1 mg DNA per well, respectively. One day after transfection, the media was replaced with serum-free (SF) medium and incubated for 24 h. Cells were treated with SF medium containing either 5 mM sulforaphane (MedChemExpress, Monmouth Junction, NJ; #HY-13755) or vehicle (0.025% DMSO) and incubated for an additional 24 h. Cells in chamber slides were fixed with Histochoice, washed with PBS, and coverslips mounted with ProLong Gold (Thermo Fisher). For immunoblots, 10 mg of PBS-soluble protein was analyzed per lane. Blots were probed with rabbit anti-RFP (Rockland Immunochemicals, Inc., Limerick, PA; #600-401-379) and mouse anti-HA (Cell Signaling Technologies, Danvers, MA; #2367).
Mice
C57Bl/6 J (Jackson Labs, Bar Harbor, ME), B6.129X1-Nfe2l2tm1Ywk/J or C58BL/6-Nfe2l2tm1.Sred/SbisJ mice (Jackson Labs, Bar Harbor, ME) were group-housed, maintained on a 12-h light-dark cycle, and provided food and water ad libitum. An equal distribution of 2–3 month old male and female mice were used for this project.
Microbead Occlusion
IOP was bilaterally elevated using the well-characterized MOM 27–29. We injected 2µl of 15-µm diameter FluoSpheres polystyrene microbeads into the anterior chamber of anesthetized mice (Thermo Fisher, Waltham, MA) as previously described27–29. Additional mice received bilateral injections of an equivalent volume of lactated Ringer's saline solution as controls. Briefly, 1.5 mm outer diameter/1.12 mm inner diameter filamented capillary tubes (World Precision Instruments, Sarasota, FL) were pulled using a P-97 horizontal puller (Sutter Instrument Company, Novato, CA), and the resulting needles were broken using forceps to an inner diameter of ~ 100 µm. Microbeads were loaded and injected using a microinjection pump (World Precision Instruments, Sarasota, FL). Mice were anesthetized with isoflurane and dilated using topical 1% tropicamide ophthalmic solution (Patterson Veterinary, Devens, MA), and 2 µl (~ 2,000 microbeads) were injected. The needle was maintained in the injection site for 20 seconds before retraction to reduce microbead efflux. Mice were given topical 0.3% tobramycin ophthalmic solution (Patterson Veterinary, Devens, MA) following injection.
IOP measurements
IOP was measured immediately prior to microbead injection and biweekly thereafter using the Icare TonoLab rebound tonometer (Colonial Medical Supply, Franconia, NH) as previously described27,28,30. Mice were anesthetized using isoflurane, and 10 measurements were acquired from each eye within 2 minutes of induction of anesthesia.
AAV injections
For experiments with an endpoint of 5 weeks post-IOP elevation, viruses were intravitreally injected one week prior to MOM injections. For experiments with an endpoint of 2 weeks post-IOP elevation, viruses were intravitreally injected two weeks prior to MOM injections. All vectors used in this study were injected with 1ul of virus solution at a concentration of 1 x 109GC/ul.
In vivo electrophysiology
Mice were dark adapted overnight, dilated with 1% tropicamide for 10 minutes and anesthetized with 20/8/0.8 mg/kg ketamine/xylaxine/urethane according to previously published methodology.36–39 Mice were placed on the heated surface of the ERG system to maintain body temperature. Corneal electrodes with integrated stimulators (Celeris System, Diagnosys LLC, Lowell, MA) were placed on eyes that were lubricated with GenTeal drops. Subdermal platinum needle electrodes were placed in the snout and back of the head at the location of the visual cortex. A ground electrode was placed in the back of the mouse. For VEPs, mice were exposed to 50 flashes of 1Hz, 0.05 cd.s/m2 white light with a pulse frequency of 1 flash. For ERGs, mice were exposed to flashes of 1 Hz, 1 cd.s/m2 white light with a pulse frequency of 1. For photopic negative ERGs (PhNR), mice were exposed to 20 continuous flashes of white light on a green background with a pulse frequency of 2. Each experimental group had 12–16 eyes.
Dihydroethidum Fluorescence
A dye that fluoresces in the presence of superoxide and, to a lesser extent, hydrogen peroxide, dihydroethidum (DHE), was utilized for these studies as previously described 31. Mice were anesthetized with 2.5% isofluorane and intravitreally injected with 1 µl (0.5uM) of DHE (ThermoFisher Scientific, Waltham, MA) diluted in phosphate-buffered saline (PBS) using a 30-gauge Hamilton syringe. Just prior to imaging, mice were anesthetized with ketamine/xylazine and eyes were dilated with 1% tropicamide. Thirty minutes after DHE injection, fluorescence was imaged on a Micron IV retinal imaging microscope (Phoenix Research Labs, Pleasanton, CA) using an FF02-475/50 nm excitation filter (Semrock, Inc. Rochester, NY) and ET620/60X emission filter (Chroma Technology Corp., Bellows Falls, VT). The average intensity of the fluorescence throughout the retina was quantified using ImageJ (Rasband, W.S., 2018). For each experimental group, 6–8 eyes were analyzed. For purposes of comparison, the DHE fluorescence measured in wildtype mice at 2-weeks (wks) (shown in Fig. 2) was also used in Fig. 6 to compare to Nrf2 KO mice. Notably, the DHE fluoresence was measured for each group during the same imaging session.
Tissue collection
For western blots and qPCR, retinas were collected and flash frozen from mice euthanized by anesthetic overdose and cervical dislocation. For immunohistochemistry and optic nerve histology, tissue was collected and incubated in 4% paraformaldehyde until use at 4oC.
Protein assay: Protein concentrations were determined from 10 µl of retina homogenates with the Pierce BCA Protein Assay Kit (cat#: 23225, ThermoFisher Scientific, Waltham, MA). BSA was used as the protein standard. Absorbance was measured with the plate reader SpectraMax M2 (Molecular Devices, San Jose, CA).
Western blot: Single retinas were sonicated in lysis buffer (PBS, EDTA and Halt protease inhibitor) and centrifuged for 30 minutes at 4oC. 4x Laemmli buffer (Bio-rad, cat# 1610747) containing ß-mercaptoethanol was added to the samples and heated for 5 minutes at 95oC. Known amounts of protein (10–20 µg/retina) or protein ladder (cat#1610375, Bio-rad, Hercules, CA) were loaded in 4–20% polyacrylamide gels (Bio-Rad #456–1095). Proteins were transferred onto nitrocellulose using the Bio-Rad trans blot turbo transfer system. Membranes were blocked in 2% BSA in TBS overnight at 4oC. Membranes were incubated in primary antibody (see Table 2) at room temperature with rocking for 2 hours. Membranes were incubated with secondary antibody (IRDye 800CW Donkey anti-rabbit, #926-32213 or IRDye 680CW Donkey anti-mouse, #926-68022,1:5000 in 1% BSA/TBS) at room temperature for 1 hour. After washing, blots were imaged with a Bio-Rad ChemiDoc system. Band density was quantified by scanning the blot using Adobe Photoshop. Each band was selected with the same frame and set measurements were used to obtain the gray mean value for each. Band intensity measurements from protein of interest were divided by band intensity measurements of loading control (b-actin). Each experimental group consisted of 5 retinas.
Quantitative PCR: Retinas were extracted from euthanized mice and placed immediately onto dry ice and stored at −80oC until homogenized by hand using 1.5ml-capacity pestles (cat#46C911, Grainger, Nashville, TN). RNA was extracted using a Qiagen RNeasy kit (Valencia, CA) as previously described.32 RNA concentration and purity were measured on a spectrophotometer. First-strand complementary DNA (cDNA) was synthesized from 250 ng of RNA from each sample using the Superscript III First-Strand synthesis system and oligo-dT20 primers (Invitrogen, Waltham, MA). Quantitative PCR (qPCR) was performed using Power SYBR green master mix (Applied Biosystems, Waltham, MA). All primer sequences were obtained from previous studies; we assessed the following: Prdx6, Gpx1, Ho-1 and Sod3 (see Table 3). All qPCR was performed in triplicate using an Applied Biosciences 7300 real-time PCR system (Waltham, MA). The amplification threshold was set using system software. Relative changes in gene expression were determined using Actin as the internal control. Each experimental group had 4–5 retinas.
Immunohistochemistry: Eyes were embedded in paraffin and sectioned at 10 microns according to previously published methods using the Vanderbilt Vision Research Center histology core21,33,34. Slides were then warmed on a slide warmer at a medium setting (about 40 oC) for 30 min. Slides were then placed in a rack and went through a series of deparaffinization steps: xylene (10 min), 100% ethanol (10 min), 100% ethanol (5 min), 95% ethanol (5 min), 80% ethanol (5 min), 60% ethanol (5 min), 40% ethanol (5 min). Slides were then placed in coplin jar covered with sodium citrate solution and boiled for 30 min (2.94g of tri-sodium citrate dehydrate in 1L of DI water, adjusted to pH of 6.0 and then added 0.5ml of Tween 20). Following boiling, slides were washed twice in 1x PBS for 5 min. Then, slides incubated in sodium borohydride solution (0.05g sodium borohydride dissolved in 50ml DI water, made fresh every time) at room temperature. Slides were then placed in blocking buffer (500mL 1x PBS, 1.25mL Triton-X, 1.25mL Tween 20, 0.5g sodium citrate, 11.25g glycine, 5g BSA) and 5% normal donkey serum (cat #: D9663, Millipore Sigma, Darmstadt, Germany) for 1 hr at room temperature. Slides were washed once with 1xPBS and placed in primary antibody diluted in staining buffer (500mL 1x PBS, 1.25mL Triton X, 1.25 mL Tween 20, 5g BSA) overnight at 4oC in a humidified chamber. The following day, slides were twice washed with 1x PBS for 5 min each. Secondary antibody was diluted in staining buffer and was added to the slides for 2 hrs at room temperature at 1:200 dilution after spinning for 10 min at 13,000g. After 2 hrs, slides were washed twice in 1x PBS for 5 min each. Then, slides were coverslipped with Vectashield containing DAPI (cat#: H-1200-10, Vector Laboratories, Burlingame, CA) and sealed with nail polish. Slides were imaged on a Nikon Eclipse epifluorescence microscope (Nikon, Melville, NY). All images were collected from the same retinal region with identical magnification, gain and exposure settings. Fluorescence intensity was quantified via ImageJ as previously described21,33. A rectangle was selected around the region of interest, channels were split for multiple antibodies, threshold was adjusted, noise was de-speckled and fluorescence intensity was measured. Fluorescence intensity was normalized to saline-injected mice. Each experimental group included 5 eyes.
Optic nerve counts: Optic nerves were post-fixed in glutaraldehyde followed by Resin 812 embedding and Araldite 502 (cat#: 14900 and 10900 respectively, Electron Microscopy Sciences, Hatfield, PA) according to previously published protocols14,34−36. Leica EM-UC7 microtome was used to collect 1 mm thick sections of the optic nerves. Sections were then stained with 1% paraphenylenediamine and 1% toluidine blue and were imaged on a Nikon Eclipse Ni-E microscope using 100x oil immersion objective (Nikon Instruments, Melville, NY). The optic nerves were montaged into a 5 x 5 image using the Nikon Elements software to scan a large image. We used the Counting Array and Better Cell Counter plugins to ImageJ, which creates a grid of nine squares overtop the montaged optic nerve. We manually counted healthy and degenerating axons, which are color-coded by the plugins. Degenerative axon profiles were identified by dark paraphenylenediamine staining due to collapsed myelin or loose myelin (onioning) surrounding the axon. A grid was used to avoid bias, by always counting in the same squares, using a cross configuration. Twenty percent of the optic nerve cross-sectional area was counted and the total was multiplied by five to estimate total and degenerating axons within the nerve. Each experimental group included 4–5 nerves.
Data Analysis
All statistical analyses were performed using GraphPad Prism software (La Jolla, CA). A one-way ANOVA with a Bonferroni post hoc test (a = 0.05) was used to analyze western blot quantification, IHC fluorescence quantification, ON quantification data, and ERG/VEP latencies and amplitudes. A one-way ANOVA and Dunnett’s multiple comparisons post hoc test (a = 0.05) were used to analyze the qPCR results. Means and standard deviation were calculated for each data set.
Table 2
Antibodies used in this study
Antibody | Company | Catalog Number | Species | Dilution for western blot | Dilution for IHC |
Nrf2 | Abcam | 137550 | Rabbit | 1:1000 | 1:200 |
pNrf2 | ThermoFisher | PA5-67520 | Rabbit | 1:1000 | 1:200 |
ß-actin | Cell Signaling | E4D9Z | Mouse | 1:1000 | N/A |
RFP (for tdTomato) | ThermoFisher | MA5-15257 | Mouse | 1:200 | 1:200 |
Prdx6 | Abcam | 133348 | Rabbit | 1:1000 | N/A |
Gpx1 | ThermoFisher | PA5-26323 | Rabbit | 1:500 | N/A |
SOD3 | Abcam | 80946 | Rabbit | 1:1000 | N/A |
ß-tubulin | Sigma | T8678 | Mouse | N/A | 1:300 |
Table 3
qPCR primers used in this study
Gene | Forward Primer | Reverse Primer |
Prdx6 | TTG ATG ATA AGG GCA GGG AC | CTA CCA TCA CGC TCT CTC CC |
Gpx1 | GGTTCGAGCCCAATTTTACA | CCCACCAGGAACTTCTCAAA |
Ho-1 | CCTTCCCGAACATCGACAGCC | GCAGCTCCTCAAACAGCTCAA |
SOD3 | AGGTGGATGCTGCCGAGAT | TCCAGACTGAAATAGGCCTCAAG |