2.1 Clinical specimens
Approved by the Ethics Committee of Department of Gastrointestinal Surgery, The First Hospital of Jiaxing, The Affiliated Hospital of Jiaxing University, forty-three patients with GC in Department of Gastrointestinal Surgery, The First Hospital of Jiaxing, The Affiliated Hospital of Jiaxing University voluntarily signed written consent forms and afforded their gastric tissues and adjacent tissues. When these tissues were isolated, they were immediately saved in liquid nitrogen until to use.
2.2 Cell lines and cell culture
Nanjing Kebai Biological Technology Co., Ltd (Nanjing, China) furnished the normal gastric epithelial cell line GES-1 and GC cell lines (AGS and HGC-27). All cells were hatched in RPMI-1640 (BIOSUN, Shanghai, China) with 10% fetal bovine serum (FBS; Bovogen, Melbourne, Australia) and 1% streptomycin-penicillin (HyClone Company, Logan, UT, USA) at 37℃ with 5% CO2.
2.3 Hematoxylin & eosin (H&E) staining assay
The paraffin sections from tumor tissues and normal tissues were dewaxed with xylene (Merck, Darmstadt, Germany) and gradually dehydrated with ethanol (Merck). Hematoxylin and Eosin Staining Kit (YEASEN, Shanghai, China) instructions were followed for staining. Sections were dehydrated with alchol and sealed and histological analysis with a microscope.
2.4 RNA extraction and quantitative real-time polymerase chain reaction (qRT-PCR)
The total RNA from cells or tissues was leached with TRIzol (Total RNA Extraction reagent) (Prilai Gene Technology Co., Ltd, Beijing, China). The RNA extracted was quantitatively analyzed using SYBR Green PCR Master Mix (Applied Biosystems, Foster City, CA, USA) in the Real-Time PCR Detection System (Bio-Rad, Shanghai, China). Housekeeping genes were glyceraldehyde 3-phosphate dehydrogenase (GAPDH) and small nuclear RNA U6 (U6). The primers used in this experiment (Table 1) were all synthesized in Suzhou Hongxun Biological Technology Co., Ltd (Suzhou, China).
Table 1
Sequences used for RT-qPCR
Name | | Primers sequences for PCR (5’-3’) |
hsa_circ_0000670 | Forward | TGCATTCTTACTCTTAGGGTTCA |
Reverse | TCATTTTCTTCCTAGACAAAGCCT |
ALKBH1 | Forward | CTTTGGACAGTCCGCCATCT |
Reverse | AACACGAGCGGTCTTCAAGT |
miR-141-3p | Forward | GCCGAGTAACACTGTCTGGTAA |
Reverse | TGGTGTCGTGGAGTCG |
C16orf72 | Forward | TAAGCGTGCGTTCGAGTACC |
Reverse | TGTCCAAGTGGAGTGCCATT |
GAPDH | Forward | AAGGCTGTGGGCAAGGTCATC |
Reverse | GCGTCAAAGGTGGAGGAGTGG |
U6 | Forward | CTCGCTTCGGCAGCACATA |
Reverse | CGAATTTGCGTGTCATCCT |
2.5 RNase R assay
RNA was cultured with 100 µg/mL RNase R (Epicentre, Madison, Wisconsin, USA). Then, qRT-PCR was executed to monitor the levels of circ_0000670 and C16orf72, respectively.
2.6 Cell transfection
Small interfering (si)RNA of circ_0000670 (si-circ_0000670), siRNA negative control (si-NC), short hairpin (sh)RNA of circ_0000670 (sh-circ_0000670), shRNA NC (sh-NC), miR-141-3p mimic, miRNA NC, miR-141-3p inhibitor, inhibitor NC, ALKBH1 expressing plasmid in pcDNA vector (pc-ALKBH1), and pcDNA NC (pc-NC) were synthesized or purchased from Genepharma (Shanghai, China) and Sangon Biotech (Shanghai, China). Lipofectamine 2000 transfection reagent (Invitrogen, Carlsbad, California, USA) was used to perform transient transfection. Transfection efficiency was tested after transfection for 48 h.
2.7 5-Ethynyl-2’-deoxyuridine (EdU) assay
EdU assay was conducted using an EdU apollo 567 in vitro kit (Solarbio, Beijing, China). GC cells were seeded onto the confocal plates and were incubated with 50 µM EdU reagent for 2 h. Cell nucleus was stained with DAPI reagent (Sigma, St. Louis, MO, USA). Cell fluorescence images were captured using a fluorescence microscope (Olympus, Tokyo, Japan).
2.8 Cell apoptosis assay
An Annexin V-fluorescein isothiocyanate (FITC)/propidium iodide (PI) kit (BD Biosciences, Franklin Lakes, NJ, USA) was used to analyze the apoptosis of GC cells. AGS and HGC-27 cells were assembled after transfected with si-circ_0000670 or si-NC for 48 h, and cells were diluted and hatched with 5 µL Annexin V-FITC at 2–8℃ in the dark for 15 min. Then cells were fostered with 10 µL of PI solution at 2–8℃ for 5 min. Flow cytometry (Agilent, Beijing, China) was used to detect and photograph the apoptotic cells within 1 h.
2.9 Western blot
Proteins was leached from cells by Radio Immunoprecipitation Assay (RIPA) lysis buffer containing protease phosphatase inhibitors and Phenylmethanesulfonyl fluoride (PMSF) (Prilai Gene Technology Co., Ltd), and the concentration of protein was measured by protein quantification Kit (BCA method) (Prilai Gene Technology Co., Ltd). Proteins of different lengths were separated via SDS-PAGE Kit (Shanghai Guduo Biological Technology Co., Ltd, Shanghai, China). The polyvinylidene fluoride (PVDF) membrane (Millipore, Billerica, MA, USA) was engaged to shift the proteins, and was sealed with 5% albumin from chicken egg white (Solarbio) for 2 h. PVDF membrane was hatched with the primary antibodies at 4℃ overnight, including anti-Bcl-2 associated X, apoptosis regulator (anti-Bax; ab32503; 1:8000; Abcam, Cambridge, MA, USA), anti-B cell leukemia/lymphoma 2 (anti-Bcl-2; ab32124; 1:8000; Abcam), anti-ALKBH1 (ab126596; 1:5000; Abcam), and anti-GAPDH (ab8245; 1:20000; Abcam). Subsequently, the membrane was incubated with the horseradish peroxidase (HRP)-conjugated secondary antibodies (ab288151; 1:3000; Abcam) for 2 h at room temperature, added with ECL Plus hypersensitive luminescence solution (Solarbio), and photographed in a gel imaging analyzer (UVITEC, Cambridge, England).
2.10 Angiogenesis Assay
10 µL of Matrigel (BD Biosciences) melted in a refrigerator at 4℃ was added to sterile ibidi angiogenesis slide, and the slide was placed in a wet box for later use. A 50 µL si-NC or si-circ_0000670 cell suspension with the density of 2×105 cells/mL was added to the Matrigel gel well and the serum-free medium was added to the well for a period of time to induce angiogenesis. Tube formation was observed and photographed under a microscope (Olympus).
2.11 Glutamine metabolism assay
The effect of circ_0000670 on glutamine in AGS and HGC-27 cells was measured with Glutamine Assay Kit (Abcam). In brief, fresh medium and cell medium were mingled with enzyme and incubated in dark for a period of time, respectively, and the absorbance at 565 nm was detect. The level of α-Ketoglutaric acid (α-KG) in cells was assessed with a α-ketoglutaric acid (α-KG) Kit (Ruixin Biotechnology Co., Ltd, Fujian, China).
2.12 Dual-luciferase reporter assay
Circ_0000670 and ALKBH1 wild-type and mutant dual fluorescence reporter vectors (WT-circ_0000670, MUT-circ_0000670, WT-ALKBH1-3’UTR and MUT-ALKBH1-3’UTR) were co-transfected into AGS and HGC-27 cells with miR-141-3p mimic or miRNA NC, respectively. The luciferase activity of each groups was measured in a TD20/20 Luminometer (Turner Biosystems, Sunnyvale, CA, USA) according to the Double-luciferase reporter Gene Test Kit (Beyotime Biotechnology, Jiangsu, China) after transfected for 48 h.
2.13 RNA immunoprecipitation (RIP) assay
RIP experiments were performed to analyze the binding effects between miR-141-3p and circ_0000670 or ALKBH1. An equal volume of RIP lysis buffer (Millipore, Billerica, MA, USA) was appended to the AGS and HGC-27 cell precipitate to lyse cells to prepare cell suspensions. Then cell pellets were incubated with anti-Ago2 antibody (Abcam) or anti-IgG antibody (Abcam)-magnetic beads. Then the complex was cultivated with proteinase K (Thermo Fisher Scientific, Rockville, MD, USA) to remove proteins. The extracted RNA was isolated by TRNZOL reagent (TIANGEN, Beijing, China), and circ_0000670, miR-141-3p and ALKBH1 were quantified by qRT-PCR.
2.14 In vivo experiment
A total of six BALB/c nude mice (5 weeks old) from the Vital River Laboratory Animal Technology (Beijing, China) were divided into two groups at random, one group was inoculated with HGC-27 cells transfected with sh-NC as a control group and the other group was inoculated with HGC-27 cells transfected with sh-circ_0000670. The size of tumor was measured every weeks as length×width2×0.5, and the mice were killed painlessly after the size of tumor was measured on the fourth weeks, and the mass of tumors were weighed. These animal experiments were approved by the Animal Welfare and Research Ethics Committee of Department of Gastrointestinal Surgery, The First Hospital of Jiaxing, The Affiliated Hospital of Jiaxing University.
2.15 Immunohistochemistry (IHC) assay
The protein expression of marker of proliferation Ki-67 (MKI67, Ki67) was detected by IHC. Tumor tissues of mice in sh-circ_0000670 group and sh-NC group were made into tissue sections with formalin and paraffin, and the slices were treated with Ki-67 antibody (ab15580; 1:300; Abcam) and the secondary antibody (ab288151; 1:500; Abcam). The samples were dyed with diaminobenzidine (Sangon Biotech) and the expression of Ki67 was assessed according to the integrated optical density in each stained area.
2.16 Statistical analysis
SPSS 21.0 (SPSS, Chicago, Illinois, USA) and GraphPad Prism 8.0 software (GraphPad Inc., LaJolla, California, USA) were serviced for data analysis and graphs. The Student’s t-test and analysis of variance (ANOVA) were employed for comparisons in data. Results were presented as “mean ± standard deviation”, and P < 0.05 was thought statistically significant.