Recombinant fusion protein EDA-E7 activates TLR4 signaling pathway and stimulate DCs maturation
EDA from fibronectin could activate TLR-4 signaling pathway of dendritic cells (DCs) and fusion protein EDA-OVA, EDA-E7 could stimulate specific CTL killing of OVA expression tumor cells and HPV-E7 infected tumor cell accordingly in mouse [13]. Nevertheless, whether EDA-E7 could be used for activation of DCs and trigger antigen specific Cytotoxic T lymphocyte (CTL) killing in human setting is not known. To address this question, we amplified human EDA from human 293 cells [1], and constructed recombinant fusion protein of EDA-HPV16E7 (EDA-E7) expressing plasmid with his tag as shown in Fig1A. The protein sequence of EDA-E7 and control E7 was shown in FigS1A. EDA-E7 and control protein E7 were purified using anti-histidine antibodies. Protein purity was confirmed by SDS-PAGE stained with coomassie brilliant blue (FigS1B). As human monocyte cell line THP-1 cells express TLR4, we checked whether EDA-E7 could activate THP-1 TLR4 signaling pathway. Signaling through canonical TLR4 leads to phosphorylation of p65, one component of the NF-KB complex [16]. Therefore, we applied western blotting to check the phosphorylation of p65, and found that p65 phosphorylation was upregulated upon EDA-E7 treatment in a dose dependent manner (Fig1A and FigS2).
To study whether EDA-E7 could activate DCs. We firstly checked whether EDA-E7 recombinant protein could be captured by DCs. E7 and EDA-E7 were labeled with LinKine™ FITC Labeling Kit (Abbkine), then co-cultured with DCs, which were purified from human PBMC. FITC positive DCs were observed in both E7 and EDA-E7 treated group as shown in Fig1B. Flow cytometry confirmed the binding of EDA-E7 to DCs with higher efficiency than E7 alone (Fig1B). Maturation of DCs upregulates the expression of cell surface MHC genes, co-stimulatory molecules as well as pro-inflammatory cytokines such as TNFα and IL12[17]. Therefore, to functionally demonstrate the role of EDA-E7 on DCs activation, we evaluated the activation marker of DCs cells with flow cytometry for HLA-DR, HLA-ABC as well as co-stimulatory molecules CD80, CD83 and CD86. The results showed that EDA-E7 upregulate both the MHC proteins and the costimulatory molecules with much better efficiency than E7 alone (Fig1C).
500uM EDA-E7 has the best effect to activate DCs in vitro
Even though previous data in THP-1 cell showed a dose dependent manner for EDA-E7 on TLR4 pathway activation from 0uM to 0.1uM, we asked whether higher dose of EDA-E7 works more efficient for DCs activation in vitro. We tried 100uM, 200uM, 500uM, 800uM and 1000uM for DCs activation and used flow cytometry for MHC molecule and costimulatory molecule as activation marker. Mean flow index data showed that from 0uM to 500uM, activation effect of EDA-E7 on DCs increased with dosage. However, after 500uM, higher concentration of EDA-E7 does not achieve better activation (Fig2). We conclude that 500uM EDA-E7 is the best concentration for DCs activation in vitro. Therefore, we will use 500uM EDA-E7 in this study unless otherwise mentioned.
Combined use of TLR activator upregulated EDA-E7 effect on DCs activation
Previous studies have shown that TLR activators anti-CD40 agonist, poly (I:C), R848 and CpG2216 has the potential to stimulate the activation of DCs [1]. We asked whether combined use of anti-CD40 agonist, poly (I:C), R848 and CpG2216 with EDA-E7 would work in synergy to stimulate DCs maturation. We treated DCs with EDA-E7, EDA-E7+anti-CD40, EDA-E7+poly (I:C), EDA-E7+R848, EDA-E7+CpG2216 and E7 as control. Flow cytometry was applied to evaluate the activation markers of DCs including antigen presenting molecule as well as costimulatory molecules. From the results we found that EDA-E7+anti-CD40 does not show better effect compared with EDA-E7, however, TLR4 activator poly (I:C), R848 and CpG2216 indeed upregulated the efficiency of EDA-E7 to stimulate DCs (Fig3A,3B). In addition to antigen presenting molecule as well as costimulatory molecules, we also checked the expression of pro-inflammatory cytokine IL-12 and TNFα in the DCs with flow cytometry. In accordance with the expression of antigen presenting molecule and costimulatory pathway, IL12 and TNFα expression by DCs were also elevated after stimulation with EDA-E7. Importantly, this effect was further upregulated by combination use of TLR4 activators poly (I:C), E7+R848, CpG2216. Interestingly, when combined use of EDA-E7 with anti-CD40 agonist, TNFα also showed elevated expression even though no significant upregulation of IL12, MHC molecules or costimulatory molecules (Fig3C,3D).
EDA-E7 matured DCs could activate T cells in vitro
As a specialized antigen-presenting cell, DCs are the key mediator of T cell immune response. They capture, ingest and process related antigens, then present the antigen to naive T cells and trigger a specific immune response. We thus asked whether EDA-E7 activated DCs could activate T cells in vitro. We treat DCs with E7, EDA-E7 or EDA-E7 in combination with anti-CD40, poly (I:C), E7+R848, CpG2216, then co-culture the DCs with human T cells purified from PBMC. OX40 and 4-1BB were used as CD4+T cell activation markers while CD107 and 4-1BB were used as CD8+T cell activation markers as reported previously[18]. We firstly analyzed the proliferation of T cells, which could indicate the activation of T cells. From the data, we found that even we seed the same number of naïve T cells before activation, cell number increased after co-culture with EDA-E7stimulated DCs compared with E7 stimulated group on day 10 post activation. Moreover, combined use of EDA-E7 with TLR activators increased the proliferation of T cells compared to EDA-E7 used alone (Fig4A). On day10 post activation, we collected the T cells for the analysis of activation. Using flow cytometry we found that compared to E7 stimulated DCs, activation efficiency of EDA-E7 matured DCs on T cells was indeed upregulated. Poly (I:C) treated group further increased CD4+T cells activation percentage from 11.8% to 13.4%; while anti-CD40, poly(I:C) and R848 treated group increased CD8+T cells activation percentage from 2.78% to 3.91, 5.78 and 8.78 respectively. These data indicates that EDA-E7 treated DCs activate T cells more efficiently than E7, and combination of EDA-E7 with the TLR3 ligand poly (I:C), which promotes T cells proliferation and survival through the production of type I IFN[19, 20], has the best efficiency to further improve T cell activation (Fig4B, 4C ).
TCR coupled single cell RNA sequencing revealed TCR enrichment and cytotoxic property of T cells after co-culture with EDA-E7 activated DCs
To determine that whether there is clonal selection and amplification of T cells after DCs stimulation, we analyzed the results from TCR coupled single cell sequencing for total T cells after stimulation with EDA-E7 matured DCs. From Fig5A we could see that each cluster was composed of different combinatorial subsets of the clonotypes. Clonal expansion was observed with clonal sizes ranging from 1 to 765 (Fig5B). CD8+T cells had more clonal cells than CD4+T cells and naïve CD4 T and CD8 T displayed very limited clonal expansion (data not shown). Cytotoxic clonetype1 which expressed high level of granzyme A, B, IFNG et, al showed higher expansion than other clonotypes (Fig5B). Pseudotime analysis indicate clonotype1 emerged as the earliest T cells clonotype activated by DCs (Fig5C). Top 10 frequency expanded clonotypes all showed high expression of GZMA, GZMB,IFNG,TNF,LAMP1 (Fig5D). To analyze the function of clonotypes, we used GO enrichment analysis to identify pathways that have been enriched in the T cells after stimulation. The results indicated biological process (BP) especially immune response related pathway were enriched in the T cells. For cellular components (CC) analysis we found extracellular components ranked most significantly upregulated, indicating immune related cytokines may be elevated in the activated T cells. Molecular function (MF) analysis found that cytokines activity was upregulated most significantly which is in accordance with BP and CC results (Fig5E).
T cells activated by EDA-E7 matured DCs efficiently kills HPV16E7 infected SiHa
Since we have shown that EDA-E7 could stimulate DCs, and DCs would present E7 antigen to activate naive T cells. We asked whether the activated T cells could specifically target HPV16E7 infected cancer cells. EDA-E7 stimulated DCs were co-cultured with naïve T cells, then activated T cells were purified and co-cultured with HPV infected cervical cancer cell line SiHa. We tried effector T cells to target cell ratio (E:T) as 1:1, 5:1, 10:1 and analyzed the lysis efficiency at 12h and 24h post co-culture. As target cells SiHa were labeled with luciferase, we could use luciferase signal to determine the lysis percentage. From the data we can see that as early as 12h, T cells start to lysis the target cells, and EDA-E7 stimulated T cells has significantly better efficiency compared with E7 alone control group for all E:T ratio groups (Fig6A). We then used flow cytometry for caspase-3, which is the marker for apoptotic cells to further confirm the anti-tumor effect of the T cells and also found that EDA-E7 matured DCs activated T cells has better lytic efficiency compared to E7 stimulated alone (Fig6B).