Isolation and screening of ligninolytic enzyme producing bacterial strains
To isolate ligninolytic enzyme producing bacteria, kraft lignin (KL) was introduced as the only carbon source to MSM agar. Additional carbon and nitrogen sources, glucose (1%) and peptone (05) were introduced as co-substrates to enhance lignin-degrading bacterial growth and ligninolytic enzyme activity. In this experiment, 48 bacterial strains designated as BL1 to BL48 were isolated on MSM agar plates and purified using the streaking technique. All bacterial strains were collected, and screening was done using MSM agar media containing guiacol, methylene blue, and phenol red on separate plates using the plate assay technique for ligninolytic enzyme activity. All 48 bacterial strains were tested for ligninolytic enzyme production. Only 12 bacterial strains produced positive findings for various ligninolytic enzymes, among these only two strains (BL2 and BL3) produced the highest activity of LiP, MnP and laccase .
16S RNA identification of potential ligninolytic bacterial strains
Using 16S rRNA sequencing, the selected prospective bacterial strains BL2 and BL3 with the highest ligninolytic enzyme production were found Bacillus paramycoides strain BL2 and Micrococcus yunnanensis strain BL3 are related genera with 97% to 100% similarity. Phylogenetic tree showing relation with potential bacterial with other bacterial strains is show in Figure 1. The degree to which various species are related was determined by comparing their sequences. The strains' respective nucleotide sequences were deposited in the gene bank under accession numbers MZ676667 and MZ676668.
Effect of different environmental conditions on ligninolytic enzymes activity
Optimization of different substrate and incubation period
Result of effect of different substrate during ligninolytic activity analysis showed that Methyl blue (40 mM) for LiP, Phenol red 80 mM) for MnP and guaiacol (20 mM) for laccase in both isolates of this study (Fig. 2a-f). Because the isolated bacterial strains in this study are capable of producing all main ligninolytic enzymes (LiP, MnP, and Lac), the results are encouraging. Bacillus paramycoides strain BL2 produces LiP (2.174 and 1.815U/ml), MnP (1.275 and 0.823 U/ml ), and laccase (1.528 and 2.483 U/ml), whereas Micrococcus yunnanensis strain BL3 produces LiP (1.075 and 2.121 U/ml), MnP(1.621and 0.268 U/ml), and laccase (1.47 and 2.942 U/ml) after 72 and 96 h respectively. Bacillus paramycoidesstrain BL2 showed maximum LiP (2.174 U/ml) and MnP (1.275 U/ml) activity at 72 hrs of incubation, while, laccase activity were found maximum (2.483 U/ml) at 96hrs incubation (Fig. 3a b). In opposite, Micrococcus yunnanensis strain BL3 showed LiP and MnP activity at 96 hrs and laccase activity at 72 hrs of incubation. Several researchers found a peak in ligninolytic enzyme synthesis in 96 to 120 hrs, which then vanished quickly when MnP and LiP activity increased (Yadav et al., 2011). Furthermore,
Effects of different pH
pH has been demonstrated to have a significant impact on Bacillus paramycoides strain BL2and Micrococcus yunnanensis extracellular ligninolytic activities. B. paramycoides produces LiP (2.215U), MnP (1.822U), and lac (2.783U) at pH 8 at the optimal incubation period, whereas M. yunnanensis strain BL3 produces LiP (2.246 U), MnP (2.147 U), and lac (1.245 U) in pH 7 at the optimum incubation period (Fig 3c-d). The pH of the culture media affects growth, ligninolytic enzyme production, and breakdown. According to various bacteria in acidic to alkaline circumstances, laccase production is greatest when the pH is between 7.0 and 9.0. In this work, pH 8.0 and 7.0 were shown to be favourable for B. paramycoides and M. yunnanensisgrowth, respectively. In this study, the optimal pH for both enzymes was 7-8, beyond which both enzymes lost their activity (Fig. 3c-d). This might be due to a shift in the concentration of hydrogen ions in the medium.
Effects of different temperature
The extracellular ligninolytic enzyme activity of Bacillus paramycoides strain BL2 and Micrococcus yunnanensis strain BL3 was clearly affected by temperature. The temperature of the culture medium is crucial for production of ligninolytic enzymes. The optimal temperature for the synthesis of ligninolytic enzymes, as found in several bacteria, is greater than that of fungus (Debnath and Saha, 2020). Very interesting finding of this study showed that the greatest LiP, MnP and laccase production was noted at 30 to 35°C (Fig. 3e-f). At temperatures over 35°C, very little ligninolytic activity was found. Optimal temperature for LiP and MnP was found 30°C to 35°C by several researchers (Zeng et al., 2015).
Effect of different carbon source
Laccase synthesis in B. paramycoides strain BL2 and M. yunnanensis strain BL3 was evaluated at 1% using five different carbon sources: sucrose, glucose, fructose, lactose, and starch. In the presence of glucose (1%), B. paramycoides strain BL2 generated LiP (3.915U), MnP (3.742U), and lac (3.545U), whereas M. yunnanensis strain BL3 produces LiP (3.845U), MnP (3.478U), and lac (2.845U). Pattern of carbon sources on enzyme secreted by B. paramycoides strain BL2 was found glucose > sucrose > fructose > lactose > starch (Fig. 4a). While, Pattern of carbon sources on enzyme secreted by B. paramycoides strain BL3 were found glucose > fructose > lactose > starch > sucrose (Fig 4b).
Effect of different nitrogen source
In microorganisms, nitrogen is mostly processed to make amino acids, proteins, nucleic acids, and cell wall components. Extracellular laccase synthesis in B. paramycoides strain BL2 and M. yunnanensis strain BL3 was evaluated using five different nitrogen sources: yeast extract, peptone, ammonium chloride, and sodium nitrate. In the presence of peptone, B. paramycoides strain BL2 generated maximum LiP (4.3 U/ml), MnP (3.8 U/ml), and lac (3.9 U/ml), whereas M.yunnanensis strainBL3 produces maximum LiP (4.6 U/ml), MnP (4.2 U/ml), and lac (3.5 U/ml) respectively (Fig. 4c d). Furthermore, 1% concentration of glucose and 0.5% was favorable for growth and Ligninolytic enzyme activity of both strains, beyond this concentration inhibits the enzyme activity. This study showed the 1% glucose, 0.5% peptone, 30 to 35°C temperature, 7 to 8 pH favourable for growth of bacterial strains and the highest LiP (43.12 U/ml), laccase (44.54 U/ml) and MnP (122.152 U/ml).
Trace elements
Microbes produce extracellular enzymes in large quantities that are influenced not only by carbon and nitrogen sources, but also by trace elements (Myszograj et al., 2018). Hence, this study also focused on effect of trace element on ligninolytic enzyme activity. In comparison to the control, the inclusion of BaCl2, KCl, ZnSO4, MgSO4, CaCl2, and FeSO4 in the medium appeared to boost bacterial growth. In the presence of FeSO4-containing media, the highest LiP and MnP generated were 5.121 and 4.724 U/ml, respectively for B. paramycoides strain BL2 and 4.621 and 4.824 U/ml for M. yunnanensis strain BL3 (Fig. 5 a , b). On addition, in a CuSO4-containing medium, the highest laccase production was observed 4.368 and 3.668 U/ml for B. paramycoides strain BL2 and M. yunnanensis strain BL3, respectively. While, CuSO4 not much affected the activity of other tested enzyme.
The physic-chemical analysis
The physicochemical characterization of PPIE was shown in Table 1 . The pulp paper industrial effluent was dark brown and alkaline in nature, which turned into light brown colour after bacterial treatment with nearly neutral pH (7 to 8). The analysis of the industrial effluent sample showed several physico-chemical parameters beyond the permissible limits along with heavy metals. Several parameters of untreated industrial effluent in (mg/l) i.e. total solid (612 ± 115), total dissolved solid (555 ± 11.12), COD (14959 ± 101.5), BOD (5800±124), Lignin (832±20.20), sulphate (1589 ± 10.98), phosphorus(178 ± 5.40), total phenol (411 ± 17.25), Cl- (1.98 ± 0.92 ), Chlorophenol (198 ± 18.24 ), total suspended solid (53 ± 1.12 ) and heavy metals such as Fe (65.02 ± 0.03 ), Ni (3.10 ± 0.75) and Zn (11.08 ± 0.15), Cu (2.01 ± 0.95), Cr (2.11 ± 0.82), Cd (0.215 ± 0.75), Mn (10.01 ± 0.11). However, a sharp reduction in pH (7.1 ± 0.10), total solid (122 ± 1.24), total dissolved solid (102 ± 1.42), COD (4235 ± 15.64), BOD (2431 ± 13.05), lignin (246±1.57), sulphate (1211 ± 3.24), phosphorus(164 ± 1.35), total phenol (317 ± 16.45), Cl- (1.132 ± 0.10), chlorophenol (185 ± 0.15), total suspended solid (18 ± 1.06) and heavy metals such as Fe (13.01 ± 0.65), Ni (0.96 ± 0.45) and Zn (2.7 ± 0.67) , Cr (1.01 ± 0.34),Cd (0.11 ± 0.75), Mn (6.06 ± 0.31) was noted as shown in Table 1 . After bacterial treatment lignin 70% , colour 63% , COD 71% , BOD 58% reduction were observed.
Detection of functional groups analyzed through FT-IR analysis present in treated and untreated pulp paper industrial effluent.
FT-IR spectroscopy is used to identify the functional groups and chemical bonds exhibiting chemical compounds present in untreated and bacterial pulp paper mill industrial effluent showed Table 2. FTIR spectrum of Pulp Paper industrial effluent (a) untreated (Control) (b) bacterial treated showed in Fig. (6 a,b). The complex bond structure of wastewater in both spectra revealed that constitutes complicated organic and inorganic compounds. Wide absorption peaks between 3600 and 3200 cm-1 give O–H stretching appeared due to the phenolic group in alcohol phenols and acids (Chandra and Kumar, 2017). Before and after Bacterial treatment wide absorption at 3414.8 cm-1 to 3396.7 cm-1, respectively and Weak absorption at 2128.1cm-1 to 2118.1 cm-1 , respectively were present in wastewater. Similar findings were previously reported by Chandra and Kumar (2017) and Chandra et al. (2018). After bacterial treatment, the sharpness of peak at 3414.8 cm-1 (Stretching O-H asymmetric grp) and 2128.4 1cm-1 (A combination of hindered rotation and O-H bonding grp) observed in control slightly reduced up to 3396.7 1cm-1 (Stretching O-H asymmetric grp) and 2118.1 1cm-1 (A combination of hindered rotation and O-H bonding grp (Fig. b). The peak at 2938.6 1cm-1 (C-H stretching bands grp ) observed in Bacterial treated was slightly reduced and shifted to 2128.4 cm -1 (O-H bending grp) in Control to Bacterial treated Further, absorption at 1653.4 and 1636.9 cm-1 observed in Control to treated. represent the presence of C=O grp and β-sheet structure of amide I grp, respectively were maximally reduced and slightly shifted into 1636.1 cm -1 ( β-sheet structure of amide I grp) after bacterial treatment due to the overall decrease in organic compounds. Absorption at 13320.1 cm -1 present in control was completely disappeared and 1295.1 cm-1 shifted to 1137.5 cm -1 due to the complete degradation of compound showed presence of Stretching PO2 2 symmetric (phosphate II) group. After treatment, 611.9 cm-1 shifted to 599.3 cm-1 might be due to the formation of compounds as intermediated compounds. Shifting, vanishing and the advent of new peaks indicated the conversion of complex toxic compounds into simple compounds (Kadam et al., 2013).
Pollutants detected through GC-MS analysis
GC-MS is a unique method used to detect trace levels of organic compounds found in pulp paper mill industrial effluent. Fig. 7 a,b depicted GC-MS chromatogram of compounds extracted from untreated and bacterial treated PPIE. Major peaks in untreated pulp paper industrial effluent showed the presence of persistent organic compounds present in PPIE. After bacterial treatment, the peak intensity reduction compared to the control and the appearance of new peaks can be observed in the treated sample. The major pollutants identified in untreated sample at different RT were 3.6-Dioxa-2,7-disilaoctane(RT: 6.07), Hexanoic acid ,trimethylsilyl ester(RT:7.78), 2-iodo-3- (p-tolyl) prop-2-ene / 7,8- Dimethyl1-4(RT:8.74), Talaromycin B(RT:9.23), 2-Heptnoic acid ,trimethylsilyl ester(RT: 10.78), Trimethylsilyl ether of glycerol(RT:12.40), Benzenepropanoic acid ,trimethylsilyl ester(RT:15.58), Tetradecane,1-iodo/Docosane (CAS)(RT: 17.07), Silane , (dodecyloxy( trimethyl- (CAS)(RT: 18.68), 7-Methyldinaphtho [2,1-b,1’,2’-d] silole(RT: 20.01), 2,2’- Methly 1enebis (4-t- butyl phenol)(RT:21.68), 1-Monolinoleoylglycerol trimethylsilyl ester(RT:20.60), 1-Monolinoleoylglycerol trimethylsilyl ester(RT:27.07), Octadecanoic acid, trimethylysilyl ester(RT: 29.94), 3,5-Dihydroxybenzoic acid 3 TMS(RT:31.08), Methyl1(Z)-3,3-dipheny.1-4-hexenoale (RT:33.16), 2,6,10,14,18,22-Tetracosahexane(RT: 35.54), Docasane(CAS) (RT: 36.27), 1,3, Bis (t-Bytylthio) benzene-4,6-bis (methyleneox)(RT: 38.71), 5,6-Dihyrostigmasterol,acetate (RT:39.36), a-D-Galactopyranoside (RT:41.45),2,2-dimethylpropyl (2Z,6E)—10,11-epoxy(RT:45.09), Pentamethyl 1 pentaphenyl 1cyclopentasiloxane(RT: 45.37), respectively (Table 3). In the untreated (control) sample, these pollutants were completely absent due to the complete degradation of PPIE by potential isolated strains and some new metabolites were formed. However, the analysis of bacteria treated pulp paper mill industrial effluent sample has showed the existence of various ROPs such as Ethyl 2-fluro-1-trifluro methyl lphyrrolo [2,1-a] isoquinlin-3 carboxylate(RT:6.48), Ethyl1[4’-acetylphenycarbomate](RT: 10.12), Trimethylsily ether of glycerol(RT: 12.42), 3-Choloro-5-(dichloromehtyl)-5-methoxy-2-fluranone(RT: 13.68), 3-Nanonone, 2-methyl(RT: 17.33), Silane ,(dodecyloxy) trimethyl-(CAS)(RT:18.69), Tricholoroacetic acid, hexadecyl ester(RT:21.12), 3-[4’-(t-butyl) phenyl] furan-2,5-dione(RT: 24.00), Docasane (CAS) (RT: 24.82), (2R,4S,5R,6S,8S,10E,12R)-12-(tert-Butyldimethylsily)-4,6-dimethoxy-2,8,10-trimethyl-10,14-pentadecadiene-1,5diol(RT:28.77),Octadecanoicacid, trimethylsilyl estermethyl (RT: 29.96), 5- Diphenylphosphinoyl-5 (1-hyroxycyloxyl)pentan-3-one ethylene acetal (RT:35.25), Mauritamide A(RT:37.76), Octasiloxane (RT: 39.39), 1,8-Diphenyl 1-3,4,10,11-tertahydro[1,4] dioxino [2,3-9:5,6-9’] diisoquinoline(RT:43.21), 2-(2,4-Dicholoro-6-Nitrophenoxy) ethanol (RT:45.49), Dimethyl exo-6-(dibromomethyl)-6-methyl 1-5 oxobicyclo[2,2.2]octa-2,7-diene-2,3-dicarboxylate dimethyl(RT:47.62), at different RT. While, some compounds Docasane (CAS) , Hexadeconoic acid , trimethylysilyl ester , Silane ,(dodecyloxy) trimethyl-(CAS) , Trimethylsilyl ether of glycerol , Octadecanoic acid, trimethylysilyl ester, Octadecanoic acid, trimethylysilyl ester were pulp paper mill industrial effluent still persistent in the pulp paper industrial effluent even after bacterial treatment. GC-MS data showed that various organic pollutants are degraded and biologically transformed into simpler compounds after bacterial treatment. These POPs might be used as primary energy source for bacteria which lead to degradation and decolorization of PPIE. The result indicates that BL2 and BL3 strains transformed or degraded chlorinated, phenolic, non-phenolic as well as lignin derivatives compounds from the PPIE.
Toxicity assessment of PPIE for environmental safety
Toxicity assay of untreated and bacterial treated PPIE on seeds germination of P. mungo L. in 3 days observations.. The various parameters of seed germination were observed with untreated and bacterial treated PPIE (Table.4). The test indicated the removal of toxicity based on germination or suppression of seed and early growth of seeds. The toxicity test of P. mungo L. seeds with different concentrations of untreated PPIE (concentration 0, 25, 50, 75, 100%) was more toxic showed only 84, 60, 40, and 20% germination respectively. While, in bacterial treated PPIE toxicity was significantly 75% reduced. The presence of more toxic pollutants and dissolved solids that are absorbed by the seeds before germination and the effect of the different physicochemical and biochemical parameters of seeds due to germination suppression at high concentrations of pulp paper industrial effluent (Sonkar et al., 2019). Increased germination percent in treated PPIE may be due to decreased and detoxified ROPs that have formed suitable environmental conditions for seed germinations and utilization as a nutrients present in industrial effluent. Recently, reported toxicity analysis of untreated pulp paper industrial effluent through seed germination tests and results were correlated with several previous studies (Kumar et al., 2020).