Abdollahzadeh J, Goltapeh EM, Javadi A, Shams-Bakhsh M, Zare R, Phillips AJL (2009) Barriopsis iraniana and Phaeobotryon cupressi: two new species of the Botryosphaeriaceae from trees in Iran. Persoonia 23:1–8.
Abed Ashtiani F, Narmani A, Arzanlou M (2019) Analysis of Kalmusia variispora associated with grapevine decline in Iran. European Journal of Plant Pathology 154:787–799.
Armengol J, Vicent A, Torné L, García-Figueres F, García-Jiménez J (2001) Fungi associated with esca and grapevine declines in Spain: a three-year survey. Phytopathologia Mediterranea 40:S325–S329.
Barber PA, Crous PW, Groenewald JZ, Pascoe IG, Keane P (2011) Reassessing Vermisporium (Amphisphaeriaceae), a genus of foliar pathogens of eucalypts. Persoonia 27:90–118.
Bertsch C, Ramírez‐Suero M, Magnin‐Robert M, Larignon P, Chong J, Abou‐Mansour E, Spagnolo A, Clément C, Fontaine F (2013) Grapevine trunk diseases: complex and still poorly understood. Plant Pathology 62:243–265.
Bonthond G, Sandoval-Denis M, Groenewald JZ, Crous PW (2018) Seiridium
(Sporocadaceae): an important genus of plant pathogenic fungi. Persoonia
40:96–118.
Cimmino A, Bahmani Z, Masi M, Di Lecce R, Amini J, Abdollahzadeh J, Tuzi A, Evidente A (2020) Massarilactones D and H, phytotoxins produced by Kalmusia variispora, associated with grapevine trunk diseases (GTDs) in Iran. Natural Product Research. doi:10.1080/14786419.2020.1791116.
Crous PW, Carris LM, Giraldo A, Groenewald JZ, Hawksworth DL, Hemández-Restrepo M, Jaklitsch WM, Lebrun MH, Schumacher RK, Stielow JB, Van der Linde EJ, Vilcāne J, Voglmayr H, Wood AR (2015) The genera of fungi-fixing the application of the type species of generic names–G 2: Allantophomopsis, Latorua, Macrodiplodiopsis, Macrohilum, Milospium, Protostegia, Pyricularia, Robillarda, Rotula, Septoriella, Torula, and Wojnowicia. IMA Fungus 6:163–198.
Crous PW, Gams W, Stalpers JA, Robert V, Stegehuis G (2004) MycoBank: an online initiative to launch mycology into the 21st century. Studies in Mycology 50:19–22.
Crous PW, Liu F, Cai L, Barber PA, Thangavel R, Summerell BA, Wingfield MJ, Edwards J, Carnegie AJ, Groenewald JZ (2018) Allelochaeta (Sporocadaceae): pigmentation lost and gained. Fungal Systematics and Evolution 2:273–309.
De Hoog GS, Guarru J, Gene J, Figueras MJ (2000) Atlas of clinical fungi. Centralbureau voor Schimmel Cultures.
Dubos B, Larignon P (1988) Esca and black measles. In: Pearson RC,
Goheen AC (eds) Compendium of grape diseases. American
Phytopathological Society, St. Paul, pp 34–35.
Farr DF, Rossman AY (2020) Fungal Databases, U.S. National Fungus Collections, ARS, USDA. https://nt.ars-grin.gov/fungaldatabases/. Accessed Dec 2020.
Fischer M, Kassemeyer HH (2003) Fungi associated with esca disease of grapevine in Germany. Vitis 42:109–116.
Fischer M, Peighami Ashnaei S (2019) Grapevine, esca complex, and environment: the disease triangle. Phytopathologia Mediterranea 58:17–37.
Fontaine F, Pinto C, Vallet J, Clement C, Gomes AC, Spagnolo A (2016) The effects of grapevine trunk diseases (GTDs) on vine physiology. European Journal of Plant Pathology 144:707–721.
Glass NL, Donaldson GC (1995) Development of primer sets designed for use with the PCR to amplify conserved genes from filamentous ascomycetes. Applied and Environmental Microbiology 61:1323–1330.
Gramaje D, Mostert L, Groenewald JZ, Crous PW (2015) Phaeoacremonium: from esca disease to phaeohyphomycosis. Fungal Biology 119:759–783.
Gramaje D, Muñoz RM, Lerma ML, Garcia-Jimenez J, Armengol J (2009) Fungal grapevine trunk pathogens associated with Syrah decline in Spain. Phytopathologia Mediterranea 48:396–402.
Graniti A, Surico G, Mugnai L (2000) Esca of grapevine: a disease complex or a complex of diseases? Phytopathologia Mediterranea 39:16–20.
Hall T (2004) BioEdit version 7.0.0. Department of Microbiology, North Carolina State University.
Huelsenbeck JP, Ronquist F (2001) MrBayes: Bayesian inference of phylogeny. Bioinformatics 17:754–755.
Hyde KD, Norphanphoun C, Abreu VP, Bazzicalupo A, Chethana KWT, Clericuzio M, Dayarathne MC, Dissanayake AJ, Ekanayaka AH, He MQ, Hongsanan S, Huang SK, Jayasiri SC, Jayawardena RS, Karunarathna A, Konta S, Kušan I, Lee H, Li J, Lin CG, Liu NG, Lu YZ, Luo ZL, Manawasinghe IS, Mapook A, Perera RH, Phookamsak R, Phukhamsakda C, Siedlecki I, Soares AM, Tennakoon DS, Tian Q, Tibpromma S, Wanasinghe DN, Xiao YP, Yang J, Zeng XY, Abdel-Aziz FA, Li WJ, Senanayake IC, Shang QJ, Daranagama DA, de Silva NI, Thambugala KM, Abdel-Wahab MA, Bahkali AH, Berbee ML, Boonmee S, Bhat DJ, Bulgakov TS, Buyck B, Camporesi E, Castañeda-Ruiz RF, Chomnunti P, Doilom M, Dovana F, Gibertoni TB, Jadan M, Jeewon R, Gareth Jones EB, Kang JC, Karunarathna SC, Lim YW, Liu JK, Liu ZY, Plautz Jr. HL, Lumyong S, Maharachchikumbura SSN, Matočec N, McKenzie EHC, Mešić A, Miller D, Pawłowska J, Pereira OL, Promputtha I, Romero AI, Ryvarden L, Su HY, Suetrong S, Tkalčec Z, Vizzini A, Wen TC, Wisitrassameewong K, Wrzosek M, Xu JC, Zhao Q, Zhao RL, Mortimer, PE (2017) Fungal diversity notes 603–708: taxonomic and phylogenetic notes on genera and species. Fungal Diversity 87:1–235.
Jaklitsch WM, Gardiennet A, Voglmayr H (2016) Resolution of morphology based taxonomic delusions: Acrocordiella, Basiseptospora, Blogiascospora, Clypeosphaeria, Hymenopleella, Lepteutypa, Pseudapiospora, Requienella, Seiridium and Strickeria. Persoonia 37:82–105.
Jeewon R, Edward CY, Hyde KD (2003) Molecular systematics of the Amphisphaeriaceae based on cladistic analyses of partial LSU rDNA gene sequences. Mycological Research 107:1392–1402.
Jeewon R, Liew EC, Hyde KD (2002) Phylogenetic relationships of Pestalotiopsis and allied genera inferred from ribosomal DNA sequences and morphological characters. Molecular Phylogenetics and Evolution 25:378–392.
Larignon P, Dubos B (1997) Fungi associated with esca disease in grapevine. European Journal of Plant Pathology 103:147–57.
Lee S, Crous PW, Wingfield MJ (2006) Pestalotioid fungi from Restionaceae in the Cape Floral Kingdom. Studies in Mycology 55:175–187.
Li GJ, Hyde KD, Zhao RL, Hongsanan S, Abdel-Aziz FA, Abdel-Wahab MA, Alvarado P, Alves-Silva G, Ammirati JF, Ariyawansa HA, Baghela A, Bahkali AH, Beug M, Bhat DJ, Bojantchev D, Boonpratuang T, Bulgakov TS, Camporesi E, Boro MC, Ceska O, Chakraborty D, Chen JJ, Chethana KWT, Chomnunti P, Consiglio G, Cui BK, Dai DQ, Dai YC, Daranagama DA, Das K, Dayarathne MC, Crop ED, de Oliveira RJV, de Souza CAF, de Souza JI, Dentinger BTM, Dissanayake AJ, Doilom M, Drechsler-Santos ER, Ghobad-Nejhad M, Gilmore SP, Góes-Neto A, Gorczak M, Haitjema CH, Hapuarachchi KK, Hashimoto A, He MQ, Henske JK, Hirayama K, Iribarren MJ, Jayasiri SC, Jayawardena RS, Jeon SJ, Jerônimo GS, Jesus AL, Gareth Jones EB, Kang JC, Karunarathna SC, Kirk PM, Konta S, Kuhnert E, Langer E, Lee HS, Lee HB, Li WJ, Li XH, Liimatainen K, Lima DX, Lin CG, Liu JK, Liu XZ, Liu ZY, Luangsa-ard JJ, Lücking R, Lumbsch HT, Lumyong S, Leaño EM, Marano AV, Matsumura M, McKenzie EHC, Mongkolsamrit S, Mortimer PE, Nguyen TTT, Niskanen T, Norphanphoun C, O’Malley MA, Parnmen S, Pawłowska J, Perera RH, Phookamsak R, Phukhamsakda C, Pires-Zottarelli CLA, Raspé O, Reck MA, Rocha SCO, de Santiago ALCMA, Senanayake IC, Setti L, Shang QJ, Singh SK, Sir EB, Solomon KV, Song J, Srikitikulchai P, Stadler M, Suetrong S, Takahashi H, Takahashi T, Tanaka K, Tang LP, Thambugala KM (2016) Fungal diversity notes 253–366: taxonomic and phylogenetic contributions to fungal taxa. Fungal Diversity 78:1–237.
Liu F, Bonthond G, Groenewald JZ, Cai L, Crous PW (2019) Sporocadaceae, a family of coelomycetous fungi with appendage-bearing conidia. Studies in Mycology 92:287–415.
Maharachchikumbura SSN, Larignon P, Hyde KD, Al-Sadi AM, Liu ZY (2016) Characterization of Neopestalotiopsis, Pestalotiopsis and Truncatella species associated with grapevine trunk diseases in France. Phytopathologia Mediterranea 55:380–390.
Miller MA, Pfeiffer W, Schwartz T (2012) The CIPRES science gateway: enabling high-impact science for phylogenetics researchers with limited resources. In: Proceedings of the 1st conference of the extreme science and engineering discovery environment: Bridging from the extreme to the campus and beyond. Association for Computing Machinery, USA:1–8.
Mohammadi H, Banihashemi Z, Gramaje D, Armengol J (2013) Fungal pathogens associated with grapevine trunk diseases in Iran. Journal of Agricultural Science and Technology 15:137–150.
Mostert L, Halleen F, Fourie P, Crous PW (2006) A review of Phaeoacremonium species involved in petri disease and esca of grapevines. Phytopathologia Mediterranea 45:S12–S29.
Mugnai L, Graniti A, Surico G (1999) Esca (black measles) and brown wood-streaking: two old and elusive diseases of grapevines. Plant Disease 83:404–418.
Nag Raj TR (1993) Coelomycetous anamorphs with appendage-bearing conidia. Mycologue publications, Canada.
Nylander JAA (2004) MrModeltest v2. Program distributed by the author. Evolutionary Biology Centre, Uppsala University, Sweden.
O'Donnell K, Cigelnik E (1997) Two divergent intragenomic rDNA ITS2 types within a monophyletic lineage of the fungus Fusarium are nonorthologous. Molecular Phylogenetics and Evolution 7:103–116.
O'Donnell K, Kistler HC, Cigelnik E, Ploetz RC (1998) Multiple evolutionary origins of the fungus causing Panama disease of banana: concordant evidence from nuclear and mitochondrial gene genealogies. Proceedings of the National Academy of Sciences of the United States of America 95:2044–2049.
Pintos C, Redondo V, Costas D, Aguin O, Mansilla P (2018) Fungi associated with grapevine trunk diseases in nursery-produced Vitis vinifera plants. Phytopathologia Mediterranea 57:407–424.
Raeder U, Broda P (1985) Rapid preparation of DNA from filamentous fungi. Letters in Applied Microbiology 1:17–20
Rayner RW (1970) A mycological colour chart. CMI and British Mycological Society 34 p.
Ronquist F, Huelsenbeck JP (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572–1574.
Senanayake IC, Maharachchikumbura SSN, Hyde KD, Bhat JD, Gareth Jones EB, McKenzie EHC, Dai DQ, Daranagama DA, Dayarathne MC, Goonasekara ID, Konta S, Li WJ, Shang QJ, Stadler M, Wijayawardene NN, Xiao YP, Norphanphoun C, Li Q, Liu XZ, Bahkali AH, Kang JC, Wang Y, Wen TC, Wendt L, Xu JC, Camporesi E (2015) Towards
unraveling relationships in Xylariomycetidae (Sordariomycetes). Fungal Diversity 73:73–144
Stamatakis A (2014) RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30:1312–1313.
Steel CC, Greer LA, Savocchia S (2007) Studies on Colletotrichum acutatum and Greeneria uvicola: two fungi associated with bunch rot of grapes in sub-tropical Australia. Australian Journal of Grape and Wine Research 13:23–29.
Surico G (2009) Towards a redefinition of the diseases within the esca complex of grapevine. Phytopathologia Mediterranea 48:5–10.
Surico G, Mugnai L, Marchi G (2006) Older and more recent observations on esca: a critical review. Phytopathologia Mediterranea 45:68–86.
Tanaka K, Endo M, Hirayama K, Okane I, Hosoya T, Sato T (2011) Phylogeny of Discosia and Seimatosporium, and introduction of Adisciso and Immersidiscosia genera nova. Persoonia 26:85–98.
Trouillas FP, Úrbez-Torres JR, Gubler WD (2010) Diversity of diatrypaceous fungi associated with grapevine canker diseases in California. Mycologia 102:319–336
Úrbez-Torres JR, Adams P, Kamas J, Gubler WD (2009) Identification, incidence, and pathogenicity of fungal species associated with grapevine dieback in Texas. American Journal of Enology and Viticulture 60:497–507.
Úrbez-Torres JR, Haag P, Bowen P, O’Gorman DT (2014) Grapevine trunk diseases in British Columbia: Incidence and characterization of the fungal pathogens associated with esca and Petri diseases of grapevine. Plant Disease 98:469–482.
Úrbez-Torres JR, Peduto F, Smith RJ, Gubler WD (2013) Phomopsis dieback: a grapevine trunk disease caused by Phomopsis viticola in California. Plant Disease 97:1571–1579.
Úrbez-Torres JR, Peduto F, Striegler RK, Urrea-Romero KE, Rupe JC, Cartwright RD, Gubler WD (2012) Characterization of fungal pathogens associated with grapevine trunk diseases in Arkansas and Missouri. Fungal Diversity 52:169–189.
Vilgalys R, Hester M (1990) Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology 172:4238–4246.
Watanabe K, Motohashi K, Ono Y (2010) Description of Pestalotiopsis pallidotheae: a new species from Japan. Mycoscience 51:182–188.
White CL, Halleen F, Fischer M, Mostert L (2011) Characterization of the fungi associated with esca diseased grapevines in South Africa. Phytopathologia Mediterranea 50:S204–S223.
White TJ, Bruns T, Lee S, Taylor J (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: PCR protocols: a guide to methods and applications (Innes MA, Gelfand DH, Sninsky JJ, et al., eds). Academic Press, USA 315–322.
Wijayawardene NN, Hyde KD, Wanasinghe DN, Papizadeh M, Goonasekara ID, Camporesi E, Bhat DJ, McKenzie EH, Phillips AJL, Diederich P, Tanaka K, Li WJ, Tangthirasunun N, Phookamsak R, Dai DQ, Dissanayake AJ, Weerakoon G, Maharachchikumbura SSN, Hashimoto A, Matsumura M, Bahkali AH, Wang Y (2016) Taxonomy and phylogeny of dematiaceous coelomycetes. Fungal Diversity 77:1–316.