Lipids and chemicals
The lipid 1,2-dioleyloxy-3-dimethylaminopropane (DODMA) was purchased from Cayman Chemical (Ann Arbor, MI, USA), 1,2-dioleoyloxy-3-dimethylaminopropane (DODAP), 1,2-dioleoyl-3-trimethylammonium-propane (DOTAP), 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine (DOPE), and 1,2-dimyristoyl-sn-glycero-3-phosphoethanolamine-N-[methoxy(polyethylene glycol)-2000] (PEG-DMPE) and cholesterol were obtained from Sigma–Aldrich Canada (Oakville, ON, Canada). Anhydrous ethanol was obtained from Commercial Alcohols (Brampton, ON, Canada).
Plasmid DNA
The plasmid pMIPS-VEE V 34 expressing a GFP gene (6.3 Kb) was a gift from Defence Research and Development Canada. The plasmid peGFP which expresses enhanced green fluorescent protein (eGFP) (4.7 Kb) from a human cytomegalovirus immediate early promoter was purchased from Clontech BD Biosciences (Mississauga, ON, Canada) [5]. All plasmids were isolated using GeneJET Endo-free plasmid Maxiprep or PureLink Expi Endotoxin-free Maxi Plasmid Purification Kits (ThermoFisher Scientific, Burlington, ON, Canada) as per the manufacturer’s instructions.
Generation of LNPs
All LNPs were prepared by combining appropriate volumes of cationic lipid (DODMA, DODAP, DOTAP or a combination of DODMA, DODAP and DOTAP lipids (Hydrid LNPs); 50 mol% unless otherwise stated), helper lipid (DOPE; 11.5 mol%), PEGylated lipid (PEG-DMPE; 1.0 mol%; unless otherwise stated), and cholesterol (37.5 mol%; unless otherwise stated) in anhydrous ethanol with plasmid DNA in 25 mM sodium acetate (pH 4.0) at a nitrogen to phosphorus (N/P) ratio of 6:1 using the NanoAssemblr Benchtop instrument and microfluidic cartridges (Precision Nanosystems, Vancouver, BC, Canada) set to a combined flow rate of 9 ml/min [flow rate ratio of 3 (DNA/ aqueous) to 1 (ethanol/lipid)]. The total lipid concentration was maintained at 14.68 mM and the cholesterol content was varied to offset changes in cationic lipid or PEGylated lipid content. The LNP formulations were diluted with PBS (pH 7.4, without magnesium and calcium; Gibco) and subjected to three sequential diafiltration steps using Amicon Ultra centrifugal filters with a nominal molecular weight limit of 10 kDa (Millipore, Etobicoke, ON, Canada) [5]. The GFP-Hybrid-LNP and GFP-DODMA-LNP preparations were stable for at least 17 months and two years respectively when stored at 4oC, with no detectable changes in size.
Characterization of LNPs
The Z-average of each LNP formulation in PBS was determined using dynamic light scattering (DLS) with a Zetasizer Nano ZS (Malvern Instruments, Malvern, Worcs, UK) set to 25ºC and a measurement angle of 173º. Samples were diluted 20 times with PBS for instrument optimization.
DNA encapsulation efficiencies were measured using a Quant-iT PicoGreen dsDNA Assay Kit (ThermoFisher Scientific) [5]. Briefly, the amount of PicoGreen fluorescence associated with free (unencapsulated) DNA (Ff) in the LNP solution was compared to the level of PicoGreen fluorescence obtained following a 5 min lysis of the LNPs using 0.05% Triton X-100 (total fluorescence, Ft). The unlysed and lysed LNP solutions (100 µl) were combined with 100 µl 1:200 PicoGreen solution prior to measurement (final [Triton X-100] = 0.025%). Standard curves containing pMIPS-VEE V 34 or eGFP plasmid DNA in the presence or absence of 0.025% Triton X-100 were also generated. Fluorescence was measured using a Synergy H1M plate reader (BioTek, Winooski, VT, USA) and the percentage of DNA encapsulation was calculated with the following formula: (Ft – Ff)/Ft × 100.
The morphology of LNPs in each formulation was characterized in JEOL2200FS TEM with an in-column Omega energy filter, running at 200 kV accelerating voltage. The cryo-TEM specimen of LNPs in aqueous solution were prepared using plunge freezing method. Briefly, 4 µl of LNPs solution was deposited on lacey carbon film supported TEM grids, glow discharged prior to placing the solution on and excess solution was blotted away from TEM grids using a filter paper. TEM grids were rapidly plunged into liquid ethane at -180oC (Leica EM GP2 Plunge Freezer) and transferred to a storage box in liquid nitrogen until imaging. Bright field cryo-TEM images of LNPs embedded in vitreous ice were obtained at -180oC. A 10-eV energy slit and defocusing were applied to enhance the contrast of LNPs and a low dose imaging was used to mitigate electron beam damage.
Cell culture
BMMC
All animals were sacrificed in accordance with the Canadian Council on Animal Care Guidelines and Policies (https://ccac.ca/en/about-the-ccac/) with approval from the Health Science Animal Care and Use Committee for the University of Alberta. The study is reported in accordance with ARRIVE guidelines (https://arriveguidelines.org). Femurs were removed from 12-week-old mice using standard dissection. Bone marrow was aspirated using a 27 gauge needle and the cells were cultured in RPMI media (Fisher, Hampton, New Hampshire, USA) supplemented with 4 mM L-glutamine (Fisher), 50 μM BME (Sigma-Aldrich, Oakville, Ontario, Canada), 1 mM sodium pyruvate (Fisher), 100 U/ml penicillin/100 μg/ml streptomycin (Fisher), 0.1 mM nonessential amino acids (Fisher), 25 mM HEPES (Fisher), 10% FBS (Gibco, Burlington, Ontario, Canada) and 30 ng/ml mouse recombinant interleukin (IL)-3 (Peprotech, Rocky Hill, New Jersey, USA), pH-7.4-7.6, in a humidified atmosphere of 5% CO2 in air at 37oC. This media will be referred to as “supplemented RPMI”. The cell suspensions were maintained at a density of 0.25-0.5 x 106 cells/ml for 4 weeks when the cells were tested for FceRI and c-Kit expression by flow cytometry to confirm maturation. After 4 weeks, 99% of cells were double positive for c-Kit and FceRI (Fig. 2A-ii). BMMC were used between 4 and 8 weeks of age.
MC/9
MC/9 cells were cultured in supplemented RPMI and maintained at a density of 0.25-0.5 x 106 cells/ml. The cells were used up to 15 weeks of culture from time of removal from cryopreservation.
Flow cytometric analysis of FceRI and Kit expression and GFP fluorescence
BMMC or MC/9 were suspended in phosphate-buffered saline (PBS) supplemented with 0.5% bovine serum albumin (BSA) (PBS-BSA, Calbiochem Omnipur BSA fraction V) at 1.5× 106 cells/ml, and incubated with 0.006 µg/ml CD117 (c-Kit) PE (eBioscience, San Diego, California, USA) and 0.006 μg/ml FcεRIα APC (eBioscience) for 1 hour (hr) at 4oC. After washing with PBS-BSA twice, cells were re-suspended in 100 μl 0.5% BSA/0.05% sodium azide in PBS (PBS-BSA-sodium azide) and analyzed on a CytoFlex flow cytometer (Bechman Coulter, USA) by acquiring 20,000 events. Rat IgG2b k PE (eBioscience) and Armenian Hamster IgG APC (eBioscience) were used as isotype controls.
To measure GFP fluorescence, BMMC or MC/9 were washed twice with PBS-BSA and resuspended in 100 µl PBS-BSA-sodium azide and analyzed on a Cytoflex flow cytometer (Beckman Coulter, USA) equipped with an Argon ion laser (488-514 nm) and bandpass filter to enable detection fluorescence emission at 516 nm (for GFP), 578 nm (for c-Kit PE) and 660 nm (for FcεRIα APC). 20,000 events per sample were acquired at a flow rate of 30 µl/minute at room temperature. As mast cells are very granular (high SSC) and large (high FSC) when compared to other immune cell types such as monocytes and lymphocytes, a well-defined cell population containing relatively high FSC and SSC were gated and analyzed as shown in Figure 2A-i (BMMC) and 2F-i (MC/9). Data was generated using FlowJo 10.6.2 software (Becton, Dickinson and Company, USA).
LNP and apolipoprotein complex formation
LNPs and Apos were incubated in ddH2O water overnight at 4°C. LNPs equivalent of 5 µg encapsulated plasmid DNA were incubated with 3 µg of each of the different human Apos; ApoA1 (Sigma, SRP4693), ApoB (Sigma, 178456), ApoC3 (Sigma, A3106), ApoD (Sigma, SRP4326), ApoE2 (Peprotech, 350-12), ApoE4 (Peprotech, 350-04) and ApoH (Sigma, G9173), unless otherwise stated, in a final volume of 200 µl. For control experiments (i.e. LNP only), LNPs were incubated with ddH2O water (in the absence of any apolipoprotein) overnight at 4°C in a final volume of 200 µl. For Cryo TEM reactions were set up as described above in the absence of ddH2O.
Transfection
BMMC were treated with Apo-LNP mixture (200 µl) in serum free supplemented RPMI media in a total volume of 500 µl. After four hr, 500 µl of supplemented RPMI media was added to the cell suspension, so that the final concentration was 0.1 X 106 cells/ml, 5 µg plasmid/ml and 3 µg Apo/ml. Control cells (BMMC or MC/9) were treated with 200 µl ddH2O water. The plate was incubated in a humidified 5% CO2 incubator at 37°C for 24 hr followed by cell collection and processing for flow cytometry as described above.
Endocytosis inhibitor and PPARγ experiments
BMMC (1 X 106 cells/ml) were treated with cytochalasin B (0.3 µM), 3-methyladenine (600 µM), chloroquine (20 nM), latrunculin B (3 µM) or a cocktail consisting of all the inhibitors for 1 hr at 37oC prior to treatment with ApoC3-LNP mixture. Samples were collected at 24 hr post transfection and were processed for flow cytometry as described above.
BMMC (1 X 106 cells/ml) were treated with the PPARγ agonist GW1929 (10 µM) or troglitazone (5 µM), PPARγ antagonist GW9662 (5 µM) or DMSO for 1 hr at 37oC prior to treatment with the ApoC3-LNPs. Samples were collected at 24 hr post transfection and were processed for flow cytometry as described above.
Trypan blue staining
0.1 X 106 BMMC were incubated with 5 µg plasmid equivalent of LNP’s for 24 hr at 37°C followed by trypan blue staining to measure % viability. Cell numbers were counted on a hemocytometer and analyzed under a light microscope (Leica MiroSystems CMS GmbH, Ernst-Leitz-ste, Model DMi1, China).
β- hexosaminidase assay
BMMC (100,000 cells/treatment) were suspended in HEPES buffer (10 mM HEPES, 137 mM NaCl, 2.7 mM KCl, 0.4 mM Na2HPO4.7H2O, 5.6 mM glucose, 1.8 mM CaCl2.2H2O, 1.3 mM MgSO4.7H2O, pH 7.4) and treated with 1, 5 or 10 µg/ml ApoC3 for 45 minutes. Degranulation was determined by measuring the amount of β-hexosaminidase released into the supernatants and normalized to the amount of b-hexosaminidase remaining in the cells after the 45 min incubation period. b-hexosaminidase was quantified by measuring the hydrolysis of p-nitrophenyl N-acetyl-β-D-glucosamide (Sigma-Aldrich) in 0.1 M sodium citrate buffer (40 mM citrate, 20 mM Na2HPO4.7H2O, 20 mM Na2HPO4, pH 4.5) for 60 min at 37oC. The percentage of β-hexosaminidase release was calculated as a percent of total content. BMMC activated with the calcium ionophore, A23187 (1 µM) was included as a positive control.
RNA extraction and cDNA synthesis
BMMC or MC/9 were treated with the PPARγ agonist GW1929 (10 µM) or troglitazone (5 µM), and antagonist GW9662 (5 µM) or DMSO for 24 hr at 37oC followed by RNA extraction using the Qiagen RNeasy Mini Kit (Cat# 74106) that employed the on-column DNase (Qiagen RNase- Free DNase Set, Cat# 79254) digestion.
The purity and concentration of the RNA was determined using the Nanodrop One (Thermo Scientific) and cDNA was synthesized using 1 mg of total RNA utilizing the High capacity cDNA reverse transcription kit (4368814, Applied Biosystems).
qPCR
qPCR was performed utilizing 20 ng of cDNA, Fast SYBR Green master mix (438612, Applied Biosystems), gene specific IDT oligonucleotide primers as described in Table 1 and a StepOnePlus real time PCR machine (Applied Biosystems)
Table 1- Intron spanning mouse oligonucleotide primers used in this study.
Gene ID
|
Gene name
|
Abbreviation
|
Forward primer
|
Reverse primer
|
NM_001080926
|
Low density lipoprotein receptor-related protein 8
|
Lrp8
|
CATCGTGCCCATAGTGGTAATA
|
GCTCATCTTCCTCTTCCTCTTC
|
NM_008084.3
|
Glyceraldegyde-3-phosphate dehydrogenase
|
GapDH
|
GGGTTCCTATAAATACGGACTGC
|
CCATTTTGTCTACGGGACGA
|
Protein extraction and quantification
BMMC (1X 106 cells) were collected by centrifugation at 500 × g for 10 minutes and the cell pellet was washed once in cold PBS. BMMC were lysed with 100 µl of 1 X RIPA lysis and extraction buffer (PI89900, Thermo Scientific™) containing protease and phosphatase inhibitor cocktail (PPC1010, Sigma-Aldrich). The lysate was gently rocked on a shaker for 60 minutes at 4°C followed by centrifugation at ∼14,000 × g for 15 minutes. The supernatant was utilized for further analysis. The protein concentration was determined by BCA assay (PI23225, Thermo Scientific™, Pierce™ BCA Protein Assay Kit).
Western Blotting
Twenty micrograms of protein from each sample was electrophoresed on Bolt™ 4 to 12%, Bis-Tri Protein Gel (NW04122BOX, Thermo Scientific™, Invitrogen™) and electroblotted onto a nitrocellulose membrane (LC2000, Thermo Scientific™, Invitrogen™). The membrane was blocked with intercept (TBS) blocking buffer (LiCOR Catalog No. 927-60001) for 1 hr at room temperature (RT), and then incubated for 3 hr at RT with antibodies against ApoER2 (ab108208, ABCAM) and β-Actin (5441, Sigma-Aldrich). The membrane was washed three times with TBS buffer and then incubated with IRDye800CW goat anti-rabbit (827-08365, LiCOR) and IRDye680RD goat anti-mouse (926-68170, LiCOR) secondary antibodies for 1 hr at room temperature. The membrane was washed three times with TBS buffer and fluorescence was detected using the LiCOR Odyssey CLX Imaging System.
Statistical analysis
Experiments were conducted at least in triplicate using three independent BMMC or MC/9 cultures started from three animals and values represent mean of n=3, 4 or 5 + standard error of the mean. P values were determined using Student t test and data was analyzed using GraphPad Prism software (https://www.graphpad.com/quickcalcs/ttest1.cfm).