Materials
Pierce Radioimmunoprecipitation assay (RIPA) lysis buffer, PBS buffer, Eagle’s Minimum Essential Media (EMEM), Trypan blue, 2 mg/mL bovine serum albumin (BSA) standards, cell scrapers, and Pierce Coomassie (Bradford) protein assay kit were purchased from Thermo Fisher Scientific unless otherwise mentioned. Fetal bovine serum, tissue culture treated 6-well and 48-well cell culture plates, tissue culture treated T25 flasks, concentrated nitric acid, ammonium acetate, ferric ammonium citrate (FAC), ferene (3-(2-Pyridyl)-5,6-di(2-furyl)-1,2,4-triazine-5′,5′′-disulfonic acid disodium salt), calcein acetoxymethl ester (Cal-AM) and sodium L-ascorbate were obtained from Sigma-Aldrich. 7-AAD solution was acquired from BioLegends. For cellular assay kits, both the DCFDA/H2DCFDA ROS generation kit (ab113851) and the JC-10 mitochondrial membrane potential assay kit (ab112134) were purchased from Abcam, while the MTT assay kit was purchased from ATCC (20-1010K).
Cell culture
HepG2 cells, a hepatocarcinoma cell line (ATCC HB-8065), with passage numbers between 3 to 10 were used for all experiments. Cells were maintained in EMEM with media changed every 1–2 days. For all iron treatments, ferric ammonium citrate (FAC) was used as the source of iron (18 mole % iron). All concentrations were prepared with respect to iron in EMEM.
Cell treatment with ferric ammonium citrate
For iron loading conditions, HepG2 cells were seeded in 6 wells plates at a density of 400,000 cells per well and grown for 2 days. Cells were treated with 1 mL media containing either 0, 50, 100, 200, 500 or 1000 µM iron from FAC each day for either 1 or 2 days. After iron loading, cells were washed with 1 mL PBS thrice. Cell lysates and subsequent total iron analysis were performed, as outlined below.
For iron retention conditions, HepG2 cells were seeded in 6 well plates at a density of 740,000 cells per well and grown for 2 days. Cells were then iron loaded by treating with 1 mL of 200 µM iron in media each day for 2 days. Then, cells were maintained for an additional 0, 1, 2 or 3 days in 1 mL of media without iron with the media replaced daily. Cells were washed with 1 mL PBS thrice. Cell lysates and subsequent total iron analysis were performed, as outlined below.
Final protocol for establishing an iron overload HepG2 model
The final protocol for establishing an iron overload model in HepG2 was followed; cells were treated with iron-containing media each day for 2 days, followed by maintaining the cells in media without iron for 1 day.
Iron overloading HepG2 cells
To assess changes in the iron overload model due to varying iron loading concentrations, cells were iron loaded with either 50, 100 or 200 µM of iron following the “Iron overloading HepG2 model” protocol. Prior to any analysis, cells were washed with PBS thrice.
For changes in total and labile iron, HepG2 cells were cultured at a density of 500,000 cells per T25 tissue culture flask. After following the iron overload model protocol, cell lysates were prepared and iron was quantified, as outline below. For changes in ROS generation and Calcein-based labile iron, HepG2 cells were cultured in 6 well plates at a density of 400,000 cells per well. Cells were stained and analyzed via flow cytometry, as described below. After being iron overloaded, HepG2 cells were also characterized for their cellular functions including metabolic activity (see MTT assay), mitochondrial membrane potential (see JC-10 assay), membrane integrity (see Trypan Blue assay), and cell viability (see 7-AAD assay). For the MTT and JC-10 assay, cells were seeded in a 48 well plate at a density of 50,000 cells per well while for the Trypan blue and the 7-AAD assay, cells were cultured in 6 well plates at a density of 400,000 cells per well.
Iron overload HepG2 cell culture and treatment with iron chelators
HepG2 cells were iron loaded with 50 µM following the “Iron overloading HepG2 model” protocol. After iron loading, cells were washed twice with PBS and then treated with 15 µM of iron chelators deferoxamine (DFO) or deferiprone (DFP) or deferasirox (DFX) prepared in EMEM for 48 hours. Cells were washed thrice with PBS and analyzed for ROS generation, changes in labile and total iron, and changes in transferrin receptor 1 expression – as outlined below. This experiment was done in triplicates. Non-iron loaded HepG2 cells were analyzed as negative control. Cells were seeded in 6 well plates at a density of 400,000 cells per well for each study.
Cell lysate preparation and protein measurement
HepG2 cells were scraped and pelleted at 500 g for 5 minutes. Harvested cells were lysed in 300 µL Pierce RIPA buffer with sonication. Cell debris was pelleted, and the supernatants were quantitatively collected. Protein content was measured by Bradford assay. A standard curve was generated using BSA and sample concentrations were interpolated. Samples were kept at – 80°C prior to any further analysis.
Iron quantification
A modified ferene assay was used to quantify both labile and total iron from cell lysates, as described elsewhere.52 Iron standards were prepared from FAC in 4% nitric acid, ranging from 0 to 1000 µM.
Labile iron measurement
Labile iron concentrations were determined from cell lysates prepared. 100 µL of cells lysates and 100 µL iron standards were transferred into clean Eppendorf tubes. To each, 100 µL ammonium acetate buffer (pH 4.5, 2.5 M) and 120 µL working solution (5 mM ferene and 10 mM ascorbic acid) were added and left overnight. This mixture was spun at 21,000 g for 10 minutes to pellet any insoluble salts and debris. Absorbance was read at 595 nm on a SpectraMax 190 Microplate Reader from Molecular Devices. Labile iron concentrations were interpolated from a standard curve generated by using iron standards.
Total iron measurements
Total iron concentrations were determined from cell lysates by first digesting them with concentrated nitric acid maintained at 100 °C to 120 °C followed by resuspension of the dried acid-digested samples in 200 µL of 4% nitric acid. Iron standards (200 µL) were transferred into clean Eppendorf tubes. To each, 200 µL ammonium acetate buffer (pH 4.5, 2.5 M) and 240 µL working solution (5 mM ferene and 1 M ascorbic acid) were added. This mixture was vortexed and left overnight. Absorbance was measured at 595 nm and sample concentrations were interpolated from the standard curves generated.
ROS measurements
Cellular ROS generation measured using a DCFDA / H2DCFDA kit (Abcam 113851) on Beckman Coulters CytoFLEX Flow Cytometer. In short, DCFDA, a fluorogenic cell permeable dye, undergoes deacetylation by cellular esterases to a non-fluorescent dye. Cellular ROS oxidize this molecule into DCF which is highly fluorescent, detected in the FITC channel. Manufacturer’s protocol was followed. In brief, after washing cells with PBS thrice, cells were stained with 5 µM DCFDA in EMEM and incubated for 20 minutes at 37 °C. Then, cells were washed with PBS, trypsinized and pelleted. At least 10,000 cells were analyzed via flow cytometry and DCF was measured by the 488 nm laser and the FITC emission filter (530/20 nm).
Calcein-based labile iron measurements
Calcein acetoxymethyl ester (Cal-AM) was used to measure changes in the intracellular labile iron, described elsewhere.53 Cal-AM is a non-fluorescent dye that readily permeates the cell membrane and is cleaved into calcein, which is fluorescent.54,55 Calcein then binds to iron stoichiometrically which quenches its green fluorescence.54,55 In short, cells were washed, tryspinized and pelleted at 500 g for 5 minutes. Cells were resuspended in PBS with 0.2 µM of Cal-AM and incubated for 20 minutes at room temperature. At least 10,000 cells were analyzed via flow cytometry and Calcein fluorescence was measured by the 488 nm laser and the FITC emission filter (530/20 nm).
Metabolic activity by MTT assay
The MTT (3-(4,5-dimethylthiazolyl-2)-2,5-diphenyltetrazolium bromide) assay (ATCC 20-1010K) was performed according to manufacturer’s protocol to investigate changes in metabolic activity. In brief, after iron loading, cells were treated with MTT for 2 hours followed by detergent-induced lysis for 4 hours. Absorbance was measured at 570 nm on SpectraMax 190 Microplate Reader from Molecular Devices. Cell viability was determined; (mean570 nm treated cells / mean570 nm untreated cells) x 100%.
Mitochondrial membrane potential by JC-10 assay
The JC-10 mitochondrial membrane potential assay kit (abcam 112134) was performed, in accordance to manufacturer’s protocol, to investigate changes in mitochondrial membrane potential. JC-10 localizes in the mitochondria and changes fluorescent emission from green to orange as membrane potential increases; its monomeric form, which emits at 520 nm, forms aggregates, which emits at 590 nm, as the mitochondria becomes more polarized. In brief, iron overload HepG2 cells were treated with JC-10 for 30 minutes at 37°C and fluorescence was measured at 490/525 and 540/590 (excitation/emission nm) on a SpectraMax 190 Microplate Reader from Molecular Devices. Mitochondrial membrane potential was determined as follows ((ratio of 520 nm / 590 nm in treated cells) / (ratio of 520 nm / 590 nm in control cells)) x 100%.
Membrane integrity by Trypan blue exclusion assay
Membrane integrity was investigated using the trypan blue exclusion method, as described elsewhere.56 In brief, iron overloaded cells were scraped and pelleted, then resuspended in media with trypan blue (HyClone Trypan Blue Stain – Fisher). Live and dead cells were counted using a hemocytometer and percentages were reported.
Cell viability by 7-amino-actinomycin D (7-AAD) assay
Cell viability was determined with a cell impermeable 7-AAD (7-amino-actinomycin D) solution (BioLegend) that fluoresces upon binding to DNA. In other words, 7-AAD fluorescence is indicative of membrane damage. Manufacturer’s protocol was followed. In short, iron overload cells were scraped and pelleted, then incubated with 5 µL of stock (50 µg / mL) per sample for 15 minutes at room temperature. Cells were then analyzed by flow cytometry; at least 10,000 cells were analyzed, and dead cells were gated in the APC channel (660/10 nm). Cell viabilities were reported as percentage of live cells (i.e., 7-AAD negative cells).
Western blot analysis
Iron overload HepG2 cells were scarped, lysed, and protein concentrations were quantified as described above. Transferrin receptor 1 expression was investigated through western blots, as described elsewhere.57 Proteins were separated in a 10% sodium dodecyl sulfate polyacrylamide gel and transferred to a nitrocellulose membrane. The membrane was blocked in 10% skim milk and incubated with both a monoclonal anti-transferrin receptor 1 (TfR1) antibody (H68.4 – Thermofischer) and GAPDH (Cell Signalling Technology) at 3 µg/mL overnight. Primary antibodies were fluorescently tagged through fluorescently labelled secondary antibodies; donkey anti-mouse with an infrared dye 700 (LI-COR) was incubated at 1:10,000 for 4 hours. The nitrocellulose membranes were imaged using LI-COR with resolution set at 169 µm, medium quality, 700 nm channel at intensity of 5, and scan area large enough to cover the membrane. The western blot was analyzed using LI-COR’s Odyssey Application Software 3.0. Data was first normalized to the house keeping protein GAPDH, and then represented relative to the control cells; (ratio of TfR1:GAPDH in treated cells) / (ratio of TfR1:GAPDH in control cells).