Sample Collection
This prospective observational study was approved by the Ethics Committees of Civil Hospital, Gurugram; Translational Health Science and Technology Institute, Faridabad, and National Institute of Biomedical Genomics, Kalyani. Consecutive pregnant women, recruited in the Interdisciplinary Group for Advanced Research on Birth Outcomes—DBT India Initiative cohort (GARBH-Ini cohort) [14], who provided written informed consent for this study, were enrolled before 20 weeks of gestation, based on self-reported information on last menstrual period and confirmed by a dating ultrasonography. They were followed up until delivery at Gurugram Civil Hospital or at the referral Safdarjung Hospital site, but were excluded from the study if they had an abortion, a miscarriage, or any pregnancy-related health complication. Maternal peripheral blood samples were collected at two time points during pregnancy (<20 weeks and 26-28 weeks). We have analyzed the results obtained for 248 women (approximately in 1:3 ratio of preterm and at term deliveries respectively) which we present in this report. Of them, 60 mothers delivered preterm (spontaneously before 37 weeks of gestation) and 188 mothers delivered at term (on or after 37 weeks, i.e., 259 days).
Telomere length reduction assay
Genomic DNA was extracted from peripheral blood collected in vacutainers containing EDTA (Becton Dickinson) using QIAamp Blood midi kit (Qiagen) and quantitated using Qubit fluorometer (Thermo). Telomere length reduction was measured using Real Time PCR as described previously [15,16] Amplification of telomere and single copy gene was achieved using SYBR Green PCR Mastermix (Thermo) and 2.50 ng of genomic DNA (both sample and standards) in a total reaction volume of 20μl in QuantStudio-7flex Real Time PCR System (Thermo). Each unknown and standard DNA sample was assayed in duplicate. Relative telomere length was expressed as telomere to single copy gene ratio (T/S ratio) and was calculated using standard curves for both PCR targets.
Statistical Analyses
Test for normality was performed by the Kolmogorov-Smirnov test. To test equality of mean values between women who delivered preterm and at term of age, period of gestation (POG), and log transformed T/S ratio (telomere to single copy gene ratio) at less than 20 weeks and during 26-28 weeks of POG, t tests were performed. For predictive modelling of risk of preterm birth, binary logistic regression analysis was performed with probability of preterm birth outcome as dependent variable and T/S ratio at two times points as independent variables.
log [p/(1-p)] = α+β1*X1+ β2*X2,
where, p denotes the probability that a woman delivers preterm, and X1 and X2 denote, respectively, the T/S ratio at or around 20 weeks and during 26-28 weeks. To estimate the enhancement of risk of PTB, and test its statistical significance, with reduction in T/S ratio, we used an empirical resampling approach. We randomly resampled 60 women who delivered pre-term and 60 (out of 188) women who delivered at term. For these 120 women, we estimated the threshold of the T/S distribution below which there were 10% of observations; that is, the lowest decile (t10)of the T/S distribution. We then calculated the risk of PTB for a T/S value below this decile, by calculating the Odds Ratio (OR) as the ratio of the number of women with T/S value below t10 who delivered preterm to those who delivered at term. We repeated this resampling and estimation of OR five thousand times, and computed the mean (OR10) and standard deviation (SD10) of OR values. We repeated the same procedure to calculate (OR20, SD20), (OR30, SD30), etc. Final inference on risk of PTB with reduction in T/S ratio was made by examining the trend of mean OR values with increasing deciles.