Cell line and cultures
The p53 wild type CLL cell line EHEB and the p53 mutant CLL cell line MEC-1 from American Type Culture Collection (ATCC, Manassas, VA, USA) were cultured with IMDM and RPMI-1640 (Hyclone, UT, USA) include 10% fetal bovine serum (Hyclone, UT, USA) respectively. All cells were tested for mycoplasma infection and placed in an incubator with 5% CO2, at 37 ℃.
Patient specimens
This study has been approved by the Medical Ethics Committee of Shandong Provincial Hospital and meets the requirements of medical ethics. On basis of International Workshop on Chronic Lymphocytic revised criterion, all CLL patients newly diagnosed have signed informed consent prior to sample collection according to the Declaration of Helsinki. Peripheral blood mononuclear cells were extracted from newly diagnosed CLL patients by Ficoll-Hypaque solution (TBD Science, Tianjin, China).
Reagent and antibodies
APG115 was provided by Ascentage Pharma Group Inc. (Ascentage, Suzhou, China). Ibrutinib was originated from MedChemExpress Inc. (MCE, Shanghai, China). Antibodies against p53, MDM2, PUMA, p21, MCL-1 were purchased from Proteintech Group Inc. (PTG, Chicago, USA). And all other antibodies including β-actin, and GAPDH were obtained from Zhongshan Goldenbridge (ZG, Beijing, China).
RNA isolation and quantitative real-time PCR
Total RNA was extracted from the collected cells by RNAiso Plus (TaKaRa, Dalian, China) and the concentration was determined by NanoDrop 2000 spectrophotometer (Thermo Fisher Scientific, WALTHAM, MA). The RNA was reversely transcribed into cDNA according to the instructions of complementary DNA reverse transcription kit (TaKaRa, Dalian, China). Quantitative real time polymerase chain reaction (qRT-PCR) was performed with the Power SYBR™ Green PCR Master Mix (TaKaRa, Dalian, China) through the 7400 real-time PCR system. Finally, 2− ΔΔCT was used to calculate the fold change to represent the relative mRNA expression level of the gene. Primer sequences were as follows: GAPDH-F: 5’-GCACCGTCAAGGCTGAGAAC-3’; GAPDH-R: 5’-TGGTGAAGACGCCAGTGGA-3’;
Western blotting
Proteins were lysed by RIPA protein lysate (Beyotime, Shanghai, China) supplemented with 1% protease inhibitor (Beyotime, Shanghai, China) and 1% phosphatase inhibitor (Beyotime, Shanghai, China) and placed on ice for 30 min. After centrifugation (Shenergy Biocolor, Shanghai, China), the protein concentration was determined by bicinchoninic acid assay (BCA) method. The same amounts of proteins were added into the polyacrylamide gel well and separated at 200 V for 30 min. Then the protein was transferred to the polyvinylidene fluoride membrane at 10 V for 30 min. The membrane was sealed in 5% skim milk at room temperature for 1 h and soaked in primary antibody at 4 ℃ overnight. The next day, the membranes were washed in Tris buffered saline containing tween (TBST) for three times. After incubated with appropriate secondary antibodies at room temperature for 1 h, another three washes in TBST were needed. Covering with the chemiluminescent reagent (Pierce), the membranes were placed in at Bio-Rad Image Lab ™ (Bio-Rad, Hercules, CA) for visualization. The Image J software was taken to analyze the protein gray density while GAPDH was used as internal references.
Cell proliferation assays
The density of cells in new culture medium to be detected during logarithmic growth period was adjusted to 1×105 cells/ml. Inoculate 100ul cell suspension in each well of 96-well plate. After incubation for 24, 48, and 72 h, add 10 μl cell counting kit-8 (Beyotime, Shanghai, China) solution to each well and wait for 2 h to measure the absorbance at 450 nm via a SpectraMax M2 microplate reader (Molecular Devices, CA, USA).
Immunofluorescence assays
PBS was added to cells at logarithmic growth stage to adjust the density to 105 cells/ml. The cells were thrown onto the slide and fixed with 4% paraformaldehyde for 15 min. Then 0.1% Triton X 100 was added to the slide for 10 min. After being sealed with 5% goat serum for 1 h, the slides were incubated with primary antibody at 4 °C overnight. The next day, Dylight 488 labeled goat anti-rat IgG antibody (Abbkine, Beijing, China) was dropped at room temperature for 1 h. The slides were washed by PBS and stained with DAPI. Microscopic analysis was performed under a Nikon C2 confocal microscope.
Analysis of cell apoptosis and cell cycle
Cells with cell cycle to be measured were collected and added 70% ethanol at 4 °C overnight. After washing with PBS, stain the cells by PI/RNase staining buffer (BD Biosciences, Bedford, MA, USA) at 37 ℃ for 15 min. Before detecting the cells by Navios flow cytometer (Beckman Coulter Inc. USA), 500 μl 1× binding buffer was added to adjust the density to 106 cells/ml. The cell cycle was analyzed by Modfit software. Cells were collected to be washed with PBS and adjust the density to 106 cells/ml by binding buffer. After incubated for 30 min with Annexin V-PE/7AAD antibody, the apoptosis assays were performed by A Navios flow cytometer from Beckman Coulter. The United States).
SiRNA transfection
The RNA interference sequences were designed by Gene Pharma (Shanghai, China): sip53#1, 5′-GGAAATGGAGTCCATTGATCA-3′; sip53#2, 5′-GCACCAAGAAGCTGAGAATGC-3′. 1ug plasmid and 1 μl lipo2000 (Invitrogen, California, USA) were diluted in 50 μl opti-MEM respectively for 5 min. Then gently mix the two tubes of diluted suspension and add the mixture into cell culture roles after 25 min. 48 h later, the cell culture medium was changed for drug intervention and further testing.
Co-Immunoprecipitation (Co-IP) assay
Cell proteins were extracted with NP-40 lysis buffer (Beyotime, Shanghai, China) on ice for 30 min and then centrifuged to discard the precipitation. Fully incubated 1-3 μg primary antibody with supernatant cracking buffer at 4 ℃ overnight. Then 30ul protein A/G PLUS agarose (Santa Cruz Biotechnology, USA) was joined the suspension at 4 °C for 2 h incubation. Wash the protein agarose with PBS for 3 times and add 2× loading buffer of the same volume at 100 °C for 10 min. The proteins were then detected by Western blotting.
Xenograft in vivo
5 ×106 EHEB cells suspended in 100 μL PBS was injected into tail vein of each female severe combined immunodeficiency (NSG) mouse (6 mice in each group, 5 weeks old). All mice in this study were randomly selected. On fifth day, flow cytometry was used to verify the establishment of CLL xenograft model. From seventh day, mice in 4 groups were injected intraperitoneally. Meanwhile, their weights were measured. After 2 weeks, the invasion ranges of CLL in mice were observed by imaging in vivo. All animal experiments were carried out in accordance with the procedures approved by the Institutional Animal Care and Research Advisory Committee of Shandong Provincial Hospital Affiliated to Shandong University (SPHASU).
Statistical analyses
Mean ± standard deviation (SD) was used to represent the results of three independent experiments. Student T test and Mann-Whitney U test were utilized to compare the differences between the two groups. Univariate ANOVA or two-factor ANOVA were performed for multi-group comparison. All data were analyzed using SPSS 23.0 software (Chicago, IL, USA) and Graphpad Prism 9.0 statistical software (San Diego, CA, USA). *p<0.05 was considered statistically significant.