2.1. Animal and husbandry
Twelve to Sixteen months old (body weight 25-35g) and 4-6 months old (body weight 19-24g) female C57BL/6 mice were obtained from the SPF-animal center of Dalian Medical University. The 12- to 16-month-old mice which were regarded as the aged mice were equivalent of 60- to 65-year-old people in human [7]. The 4-6 months old mice were regarded as young mice in this study. All mice were kept in the animal house with food and water ad libitum, where the temperature kept 20-24°C, humidity 40-70%, and lighting 12 hours light / 12 hours dark. The animals were kept for at least 7 days before the experiment to acclimate the environment. All procedures and protocols related to the animals were approved by the Institutional Animal Care and Use Committee of the Dalian Medical University and performed in accord with the legislation.
2.2. Main reagents and antibodies
ABT-263 (Navitoclax), 3-MA (3-methyladenine) and Rapamycin (Sirolimus) were purchased from Selleck Chemicals (TX, USA). The primary Rabbit monoclonal antibodies of Bcl-2, Bax, Beclin-1(Becn), Atg5, LC-3, Trem-2, and Tubulin-α conjugated with Alexa Fluor® 790 were acquired from Abcam (Cambridge, UK). The secondary antibodies Goat anti-Rabbit IgG H&L (Alexa Fluor®680) was purchased from Abcam as well. The DAPI (4', 6-diamidino-2- phenylindole) was obtained from Beyotime (Shanghai, China). The F4/80-PE anti-mouse antibody, PE Rat IgG2a isotype and biotin anti-mouse CD16/32 antibody were purchased from Biolegend (San Diego, CA). The Phallodin-iFluor 633 Conjugate was purchased from ATT Bioquest® (Sunnyvale, CA). The cell culture reagents, RPMI 1640 and FBS (fetal bovine serum) were purchased from Biological Industries (Cromwell, CT). The RT2 First Strand kit and Profiler PCR Array (PAXX-084) and SYBR Green qPCR master mix were purchased from Qiagen (Hilden, Germany). Proteome Profiler Array of Mouse cytokine (ARY006) was purchased from R&D systems, Inc. (MN, USA).
2.3. Animal study design
The animals were separated into young and aged group by age. Then, the young and aged mice were randomly divided into three subgroups: the ABT group, the 3-MA group and the CSI group (Vehicle group). We determined sample size using GraphPad Statmate (Version 2.0, GraphPad Software, Inc., La Jolla, CA). A minimal sample size of 14 in each group has a 50% power to detect an increase in survival proportion with a significance level (α = 0.05, two-tailed). Thus, fourteen mice per group were used to observe the survival rate of sepsis. In aged groups, another 4 aged mice in each subgroup were used and harvested the spleen 24 h after CSI for RT-PCR, Western blot and other analyses.
ABT-263 was dissolved in the carrier (10% ethanol, 30% polyethylene glycol 400 and 60% Phosal 50 PG) which made a 6.5 mM solution. Each mouse in the ABT group received the oral dose of ABT-263 solution 50mg/kg/d (approx. volume was 160 ~ 220 μL). For the CSI group, each mouse was given the same carrier as the ABT group 200 μL orally as the vehicle control. These two groups were given the drug or vehicle once a day and continued for 7 days, then received the cecal slurry injection (CSI) to induce sepsis after a 7-day break. For the 3-MA group, the mouse was firstly given ABT-263 50mg/kg/d the same as ABT group. Then, 3-MA was dissolved in the sterile water which made a 1.5 mg/mL solution. Each mouse was injected intraperitoneally 0.5 mL/d for 3 days before received the CSI (Fig-1 a).
Sepsis was induced by CSI method as the literature described [8]. To be brief, prepare the cecal slurry from a fresh cecum which was dissected from a 4-month-old C57BL/6 mouse. Weigh the cecum and mix with sterile normal saline (NS) at a ratio of 0.5 ml to 100 mg of cecal content. Filter the cecal slurry (CS) twice by a sterile mesh (200-μm, Beyotime). Inject 250 μL of CS into the mouse abdomen cavity to induce acute polymicrobial abdominal sepsis.
2.4. Mouse peritoneal macrophages isolation and primary culture
Inject 1 mL of 3.5% Brewer thioglycolate medium into the mouse peritoneal cavity. Three days later, euthanize the mouse by cervical dislocation after rapidly inducing anesthesia by 3-5% sevoflurane. Sterilize the mouse abdomen with 75% ethanol and inject 5 mL of cold phosphate-buffered saline (PBS) into the peritoneal cavity without puncturing the bowel. Gently massage the mouse abdomen on the two sides and remove the peritoneal fluid into a centrifuge tube. Centrifuge for 10 min at 400x g at 4-8°C. Discard the supernatant and suspend the cell pellet in RPMI 1640 medium with 10% FBS. Add 5 x 106 cells into each well of a 6-well plate for the flow cytometry assay and 5 x 105 cells per well into a 24-well plate for fluorescence microscopy. Culture the cells at 37°C in a 5% CO2 incubator overnight. On the next day, refresh the culture medium to remove the nonadherent cells which mostly are lymphocytes. The rest of the adherent cells are mostly the macrophages, which can be easily distinguished by the morphology under a microscope.
2.5. Cell viability assay
Cell viability was assayed with the cell counting kit-8 (CCK-8; Dojindo, Japan) according to the manufacturer's protocol. To be brief, the primary macrophages were planted in 96-well plates (10000 cell/well) and incubated in RPMI 1640 with 10% FBS at 37°C in 5% CO2 incubator overnight. Then, the cells were treated with several incremental concentrations of ABT-263, 3-MA and rapamycin for 24 h. The next day, the cells were washed with PBS and incubated with 100 μL of CCK-8 working solution at 37°C for 1 h. Then, read the absorbance of the wells at 450 nm using a micro-plate reader.
2.6. SA-β-galactosidase staining
The primary macrophages were seeded in a 6-well plate and culture at 37°C in 5% CO2 incubator overnight. The SA-β-gal staining was performed using the cell senescence staining kit (Beyotime) according to the manufacturer's instruction. After washed twice with PBS, Cells were fixed with fixation solution for 15 min at room temperature. Then, washed the cells with PBS and stained with staining solution at 37°C overnight (Do not leave the plate in a CO2 incubator). Images were captured with the Leica DMI1 inverted microscope. The senescent cells were identified as blue-stained cells under microscopy. Count the SA-β-gal-positive cells in 10 randomly selected fields, and the percentages of SA-β-gal-positive cells were calculated for statistical analysis.
2.7. Western blot assay
The total protein of the cells or spleen tissue were extracted using 1% Triton X-100 (Beyotime) with 1x protease inhibitor cocktail (Beyotime), and then the concentration of protein was quantified using the Bradford protein assay kit (Beyotime). Twenty micrograms of protein were separated by SDS-PAGE and transferred to a PVDF membrane (0.22 μm, Bio-Rad, USA). After blocking with Quick-Block buffer (Beyotime), the membranes were incubated and shaking gently overnight at 4 °C with the primary antibody against LC-3 (1:2000), Bcl-2 (1:2000), Bax (1:2000), Beclin-1 (Becn; 1:2000), Atg5 (1:2000), Trem-2 (1:1000). All the primary and secondary antibodies were purchase from Abcam Inc. (UK). After washing with TBS-T extensively, the PVDF membranes were incubated with an appropriated Alexa Fluor® 680-conjugated secondary antibody (1:10000) for 1 h at room temperature on the next day. The bands were detected and analyzed with Odyssey CLx (LI-COR, USA) system. After the detection the PVDF membranes were stripped and incubated with Tubulin-α conjugated with Alexa Fluor® 790 (1:10000, Abcam, UK) for 2h at room temperature, and detected the band for the loading control to normalize the interested proteins. The intensity of these bands was quantified with Image Studio software (LI-COR, version 5.2.5).
2.8. RNA isolation, RT-PCR and PCR Array
The total RNA of the spleen or the peritoneal macrophages were extracted and purified using the RNA-simple RNA extraction Kit (Tiangen, Beijing, China). The concentration of RNA was determined by A260/A280 using the Nanodrop 2000c (Thermo, Wilmington, DE). Equivalent amounts of RNA were reverse transcribed into cDNA using the RT2 First Strand kit (Qiagen) according to the kit's protocol. The qPCR was performed using the mouse Autophagy RT2 Profiler PCR Array (PAXX-084; Qiagen) and SYBR Green qPCR master mix (Qiagen) according to the manufacturer's instructions, on Light-Cycler 96 Real-Time PCR instrument (Roche, Mannheim, Germany). Gene expression data were analyzed with a web-based software from Qiagen. For the RT-PCR, primers were obtained from the web-based database Primer bank [9] and synthesized from Takara (Dalian, China). See supplementary Table 2 for the primers detail. The qPCR was also performed on Roche Light Cycler 96 using SYBR Green master mix (Tiangen). The cycle threshold (Ct) values were measured and normalized to the Ct of housekeeping gene GAPDH. The -△△Ct were calculated to indicate the relative mRNA expression of each target gene.
2.9. Macrophage phagocytosis assay using fluorescence microscope and flow cytometer
The phagocytosis ability of macrophages was quantified using EGFP-expressing E. coli as the previous literature described [10]. To be brief, the peritoneal macrophages were cultured in a 24-well plate. Add 100 μL of fresh culture medium and 10 μL of EGFP-expressing E. Coli. suspension (approximately 2 x 107 cells) into each well. Incubate 1 h in a 37°C 5% CO2 incubator. Firstly, add 0.8% crystal violet (CV) water solution and wash shortly to quench the fluorescence of non-internalized bacteria. Wash with cold PBS and fixed the cells with 4% formaldehyde at RT for 30 min. Then, wash with PBS and add phalloidin-Alexa Fluor 633 conjugate working solution to stain the F-actin. Incubate in a dark humid place at RT for 60 min. Wash the cells with PBS and then incubate with DAPI 5 min at RT to stain the cell nuclear. Rinse once with PBS and observe using an invert fluorescence microscope (Leica DMI-3000). Count the green-fluorescence-positive cells in 10 randomly selected areas, and the percentages of these cells were calculated using FIJI (ImageJ) software version 2.0 (NIH, USA) for statistical analysis.
The flow cytometer (BD FACS Canto-II) was used to quantify the phagocytosis ability of the macrophages precisely. The primary macrophages were cultured in a 6-well plate. Add 50 μL of EGFP-expressing E. Coli. suspension (approximately 1 x 108 cells) into the wells according to the group setting. Then place the 6-well plate in the 37°C 5% CO2 incubator for 1 h. Wash with 0.8% CV working solution shortly to quench the fluorescence of extracellular bacteria. Wash the cells with PBS 3 times to remove any residual CV. Add 70mM cold EDTA to detach the cells and transfer into the flow cytometry tube. Use F4/80-PE conjugated antibody (Biolegend) to mark the macrophages. Resuspend the cell pellets with 200-300 μL of PBS for flow cytometry analysis. Run each tube and acquire data for at least 10,000 events of F4/80-positive cells. BD FACS-Diva software (Version 8.0.1) was used to analyze the data and generate the contour plots.
2.10 Cytokine antibody array assay
Cytokine antibody array was performed with a mouse cytokine array kit (R&D Systems) according to the manufacturer’s protocol. Briefly, the mouse spleen was harvested and prepared into tissue lysate sample. After centrifuged, the membranes precoated with cytokine antibodies were incubated with supernates. After washed with washing buffer and added with detection antibody, the membranes were incubated by adding streptavidin-HRP and Chemo-Reagent Mix. The immunoblot images were captured and the intensity of each spot in the captured images was analyzed using the ChemiDoc MP system (Bio-Rad, USA).
2.11. Statistical analysis
The Kolmogorov-Smirnov test was performed to examine the normality of the data. The Data which passed the KS test were presented as mean ± S.D. One-way analysis of variance with Bonferroni correction, or the Student's t test for unpaired data were performed when appropriate. Survival curves were plotted using Kaplan-Meier method and compared using the Gehan-Breslow-Wilcoxon test. GraphPad Prism (Version 8.0, GraphPad Software, Inc., La Jolla, CA) was used to perform the data analysis and generate the histograms. Statistical significance was considered when P<0.05.