Middle Cerebral Artery Occlusion and Reperfusion (MCAO/R)
A total of 72 male Sprague-Dawley rats (260–280 g) were housed in the Animal Center of Chongqing Medical University. The temperature was set at 25 °C, and the rats were allowed to drink water freely. The rats were maintained under a 12/12-h light/dark cycle. All animal procedures were conducted following the ethical regulations for animal experiments and were supervised by the Animal Center of Chongqing Medical University. (License Number: SYXK YU 2018-0003).
The IS model was carried out in accordance with previous studies[22, 23]. The rats were anesthetized by intraperitoneal injection with 3% pentobarbital sodium (1 ml/kg). Rats were placed in the supine position to expose the common carotid artery (CCA), external carotid artery (ECA) and internal carotid artery (ICA). A silicone nylon suture was inserted from the CCA into the ICA to block the middle cerebral artery. After 90 min, the plug was slowly removed, and the CCA was ligated. The operation in the sham group was the same as in the model group, except the plugs were not inserted.
Experimental Groupings
To study the expression of NAF-1, the rats were randomly divided into the following five groups: Sham, MCAO/R 12 h, MCAO/R 24 h, MCAO/R 48 h, and MCAO/R 72 h. To study the role of NAF-1 in MCAO/R, the rats were grouped as follows: Sham, MCAO/R, MCAO/R+LV-NC, MCAO/R+LV-NAF-1.
Lateral ventricle injection: 14 days before MCAO surgery, either NAF-1-overexpressing lentivirus (5.5 µL of 1 × 108 TU/mL, GENE, Shanghai, China) or control lentivirus (7.5 µL of 1 × 108 TU/mL) was injected into the lateral ventricle. The rats were anesthetized with pentobarbital sodium by intraperitoneal injection, immobilized, and the bregma was exposed. The injection site was 1.5 mm to the right of the bregma and 0.8 mm posterior. The depth of the injection was 4.5 mm. A 10-µL volume of lentivirus stock was used for injection.
OGD/R
In this study, rat PC12 adrenal pheochromocytoma cells from the National Collection of Authenticated Cell Cultures (Shanghai, China) were used to simulate rat cortical neurons. Cells were cultured in DMEM containing 10% FBS (ExcellBio, Shanghai, China). For OGD, the medium was replaced with glucose-free DMEM (Gibco, Waltham, MA, USA) under a hypoxic environment (1% O2, 93.5% N2, 5% CO2) for 2 h. Then, cells were cultured in a maintenance medium. To study the expression of NAF-1 in PC12 cells, the cells were divided into the following five groups: Control, OGD/R 6 h, OGD/R 12 h, OGD/R 24 h, and OGD/R 48 h.
Lentivirus Infection and siRNA Transfection
To study the function of NAF-1 in vitro, PC12 cells were divided into the following groups: Control, OGD/R, OGD/R+LV-NC, and OGD/R+LV-NAF-1. Cells were infected with LV-NAF-1 (MOI = 10) or LV-NC (MOI = 10) for 72 h. Then, stable lines were selected with puromycin (10 mg/mL) (BioFroxx, Einhausen, Germany) for 1 week. Next, to study the effect of NAF-1 downregulation, cells were divided into the following groups: Control, OGD/R, OGD/R+siNC, and OGD/R+siR-NAF-1. siR-NAF-1 sense (ACCUUGCAGUUCGUCCAUUCU-tt) and siNC sense (UUCUCCGAACGUGUCACGUdTdT) were synthesized by GeneBiogist (Shanghai, China). Cells were cultured to 50% confluency, and then, siRNA (60 nM) and riboFECT CP reagent (RIBBIO, Guangzhou, China) were added to the cells and maintained in culture until subsequent experiments.
Quantitative Real-Time Polymerase Chain Reaction (qRT-PCR)
RNA from PC12 cells and rat cortical tissues were extracted with Trizol (Sangon Biotech, Shanghai, China), and then converted into cDNA using the Evo M-MLV RT Kit (Accurate Biotechnology, Hunan, China). cDNA and SYBR Green qPCR Master Mix (Bimake, Shanghai, China) were used for amplification with the following thermocycling parameters: 95 °C for 30 s, 38 cycles at 95 °C for 5 s and 62 °C for 30 s, 65 °C for 5 s, and 95 °C for 5 s. The primer sequences were as follows: rat NAF-1 (Fw: 5ʹ-GCTTACTGCCCTTCCTTGGT-3ʹ, Rev: 5ʹ-TCTGTTGCTTCTTCTTCGGGA-3ʹ) and rat β-actin (Fw: 5ʹ-GGAGATTACTGCCCTGGCTCCTA-3ʹ, Rev: 5ʹ-GACTCATCGTACTCCTGCTTGCTG-3ʹ).
Western Blotting
Total proteins from rat cortical tissues and PC12 cells were extracted using RIPA buffer (Beyotime, Shanghai, China). A 12.5% PAGE gel fast preparation kit (Epizyme, Shanghai, China) was used to resolve the proteins, which were then transferred onto PVDF membranes (Millipore, Boston, MA, USA) and blocked with 5% BSA for 2 h. The membranes were then incubated overnight at 4 °C with the following primary antibodies: β-actin (1:6,000, Proteintech, #66009-1), LC3A/B (1:1,000, Cell Signaling Technology, #12741), TOMM20 (1:1,000, Abcam, #ab186735), NAF-1 (1:1,000, Cell Signaling Technology, #60758), Beclin1 (1:1,000, Affinity, #AF5128), p62 (1:1,000, Cell Signaling Technology, #5114), PINK1 (1:2,000, Affinity, #DF7742), Parkin (1:1,000, ABclonal, #A0968). The membranes were thereafter incubated with secondary antibody. Finally, an ECL FemtoLight Chemiluminescence Kit (Epizyme, Shanghai, China) was used for detection.
Tissue Mitochondrial Isolation
Mitochondria were isolated with a tissue mitochondrial isolation kit (Beyotime). Fresh cortical tissue was homogenized in mitochondrial isolation reagent containing PMSF, and then centrifuged at 600 × g at 4 °C for 5 min. The supernatant was then centrifuged at 11, 000 × g at 4 °C for 10 min. The pellet was mitochondria.
Cell Viability Assay
MTT (5 mg/mL) (BioFroxx) was used to measure cell viability. A 20-µL of MTT was added to cells and incubated for 2 h at 37 °C. Then, cells were incubated with 150 µL dimethyl sulfoxide (Sigma-Aldrich, St. Louis, MO, USA). The absorbance was measured at 490 nm with a microplate reader (Thermo Fisher Scientific, Waltham, MA, USA).
Flow Cytometry
An Annexin V-iFluor 488/propidium iodide (PI) Apoptosis Detection kit (CHAMOT, Shanghai, China) was used to detect apoptosis. The cells were reacted with Annexin V-iFluor 488 and PI for 15 min. Finally, the apoptosis level was measured using a BD Influx apparatus (BD Biosciences, San Diego, CA, USA).
ATP Content
ATP content was measured with an ATP assay kit (Beyotime). In short, cells and tissues were lysed and centrifuged. The chemiluminescence value of the supernatant was measured using a microplate reader (Thermo Fisher Scientific), and a standard curve was used to calculate the ATP content.
Mitochondrial Membrane Potential (MMP) Assay
MMP was measured using a JC-1 assay kit (Beyotime). Briefly, mitochondria were isolated from tissues with the tissue mitochondrial isolation kit. JC-1 staining solution was added to mitochondria, and the fluorescence intensity was detected at 485 nm excitation/590 nm emission on a microplate reader (Thermo Fisher Scientific). For cells, JC-1 staining solution was added to the cells and incubated for 20 min. The fluorescence intensity was detected on a fluorescence microscope (Nikon, Tokyo, Japan) after three washes.
Transmission Electron Microscopy (TEM)
The cells were digested and centrifuged at 1, 200 rpm for 10 min, and then gently fixed with glutaraldehyde. Mitochondria and autophagosomes were observed by TEM (Hitachi 7100, Tokyo, Japan).
Immunofluorescence Staining
Mitochondria were stained using Mito-Tracker Red CMXRos (Beyotime) for 30 min. Then, the cells were fixed with cold methanol for 5 min and permeabilized with 1% Triton X-100 (Beyotime) for 10 min. Thereafter, cells were blocked with 10% goat serum (Mengbio, Chongqing, China) for 1 h. Primary antibody was then added to the cells and incubated overnight at 4 °C. The secondary antibody (1:200, Abcam, #ab150077) was added to the cells and incubated at room temperature for 1 h. Finally, cells were incubated with DAPI (Servicebio, Wuhan, China) for 10 min, and the fluorescence intensity was observed on a fluorescence microscope (Nikon).
Neurological Deficits
To assess neurological deficits, 48 h after MCAO, a blinded researcher assessed each group of rats using the Zea-Longa[24] scoring system, as follows: 0 = no apparent damage, 1 = the contralateral forelimb cannot fully extend, 2 = flex to the opposite side and cannot extend, 3 = fall to the opposite side, 4 = unable to walk.
Infarct Area
The brain was frozen at −20 °C for 1 h, and then cut into coronal sections of 2 mm. The slices were placed into 2% 2,3,5-triphenyltetrazolium chloride (TTC, Sigma-Aldrich) for 30 min at 37 °C, and then fixed with 4% paraformaldehyde (Servicebio, Wuhan, China) overnight. The infarct area appeared white. Cerebral infarct area (%) = infarct area × 100/total area.
Hematoxylin-Eosin (HE) Staining
Forty-eight h after MCAO, rats were transcardially perfused with PBS and 4% paraformaldehyde (Servicebio). The whole brain was removed and fixed in 4% paraformaldehyde. The brain tissue was then paraffin-embedded, sectioned for HE staining, and photographed on a light microscope (Nikon). The damaged nuclei were pyknotic or vacuolated. Percentage of damaged cells (%) = number of damaged cells × 100/total number of cells[25].
Statistical Analysis
All data were analyzed with GraphPad Prism software (version 6.0) and expressed as mean ± SD. One-way ANOVA was used to compare the data. P < 0.05 indicated a significant difference.