2.1 Cell culture
Human PCa cell lines (PC3 and DU145), as well as normal human prostate epithelial cell line (HPrEC), were purchased from the American ATCC Cell Bank (ATCC, www.ATCC.rog, USA). DU145 and PC3 cells were cultured in RPMI-1640 (Gibco, USA) and F12K medium (Gibco), respectively. HPrEC cells were cultured in ATCC prostate primary epithelial cell medium. 10% fetal bovine serum (FBS, Gibco) and 1% penicillin-streptomycin (Solarbio, China) were added to the medium, and the cells were cultured at 37°C in a humidified environment with 5% CO2.
2.2 Clinical specimen collection
Between September 2015 and June 2020, we collected clinical tissue specimens from 55 PCa patients treated with radical prostatectomy in the Urology Department of the Second Affiliated Hospital of Nanchang University. After isolation of the specimens, the tissues were divided into tissue blocks of 2 cm and then stored in a liquid nitrogen tank till further processing. The study protocol and informed consent were approved by approved by The Second Affiliated Hospital of Nanchang University Medical Research Ethics Committee. All clinical tissue specimens were conducted in accordance with the Guide for Declaration of Helsinki and Obtain the patient's consent.
2.3 Cell transfection
Construct and synthesize siLinc00467 and overexpressed TRAF5 plasmid (KeyGEN BioTECH, NanJing, China). siLinc00467 and NC (Linc00467) sequences are given in Table 1
Table 1 siLinc00467 and NC (Linc00467) sequences
shRNA
|
sequences
|
siLinc00467(SH1)
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5’-ACACTAAGTTCAGACTCAT-3’
|
siLinc00467(SH2)
|
5’-CCTGACTCATGCTACGCAA-3’
|
siLinc00467(SH3)
|
5’-GCAACATTCATGCGACTATT-3’
|
siLinc00467(SH4)
|
5’-TCAGACTCATGAAACCAAT-3’
|
NC(Linc00467)
|
5’-GAGTAATCAAATAAATGCGA-3’
|
Cell grouping- Control group: blank control group; Negative control group; Linc00467 inhibitor group: transfecting siLincoo467; Ov-TRAF5 group: transfecting overexpressed TRAF5 plasmid group.
Cell transfection: 24 h before transfection, cells were passaged in 6-well plates, and transfection was performed when the cells grew to about 70%-90%. The siLinc00467 and TRAF5 plasmids were transfected into PC3 and DU145 cells with Lipofectamine3000 (Thermo Fisher Scientific, Carlsbad, California, America). The specific operations were carried out according to the protocol provided with Lipofectamine3000. The cell medium was changed after 6 h, and RNA and total protein were extracted after culturing for 72 h.
2.4 RNA extraction and real-time quantitative RT-PCR (RT-qPCR) analysis
Post-treatment, the total RNA of each group was extracted, and 5 µg total RNA was reverse transcribed into cDNA using the Reverse Transcription system (Takara Bio, Inc.) according to the manufacturer’s protocol. PCR was carried out using 2 µL of cDNA product, 1 µL (10 µM) of forward and antisense primers, 12.5 µL of 2×Taq PCR Master Mix, and 8.5 µL of ddH2O (total reaction volume of 25 µL). GAPDH was taken as the internal reference.
The relative expression of Linc004”7 an’ TRAF5 was determined by the 2−ΔΔCT method. The primer sequences were as follows
Linc00467–F:
|
5′- CAGCACCGATCCCGACATAGAT -3′
|
Linc00467–R:
|
5′- TCTGGCTTCCTGAAGACGATGA -3′
|
TRAF5–F:
|
5′- AACACCTGGCTGTATGTCCTGAAG -3′
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TRAF5–R:
|
5′- ATGTGCTCCCGTAAGGCTGAATG -3′
|
GAPDH–F:
|
5′-AGATCATCAGCAATGCCTCCT-3′
|
GAPDH–R:
|
5′- TGAGTCCTTCCACGATACCAA-3′
|
2.5 Western-blot
Protein samples were denatured in SDS sample buffer (125 mmol/L Tris-HCl, pH 6.8, 50% glycerol, 2% SDS, 5% mercaptoethanol, 0.01% bromophenol blue) and subjected to SDS-PAGE (5% concentration and 12% separation) and blotted onto Immobilon-FL transfer membranes (EMD Millipore). The blotted membranes were blocked at 4˚C with 5% skimmed milk in Tris-buffered saline containing 0.1% Tween 20 (Beijing Solarbio Science & Technology Co., Ltd.) for 2 h. They were subsequently incubated with primary antibodies against TRAF5 (1:500, cat. No. 41658, Cell Signaling Technology, Inc.) overnight at 4˚C. After three washes in Tris-buffered saline containing 0.1% Tween 20, the PVDF membranes were incubated with anti-mouse IgG (dilution 1:5,000, cat. No. SW1030, Beijing Solarbio Science & Technology Co., Ltd.) for 2 h at 25˚C. Next, the PVDF membranes were soaked in chemiluminescence reagents (cat. No. SW2030, Beijing Solarbio Science & Technology Co., Ltd.). Quantification of the western blotting was performed using a Bio-Rad imaging system (ChemiDoc MP v721BR06186, Bio-Rad Laboratories, Inc.).
2.6 Transwell assay
The Transwell invasion chamber was used to detect changes in invasive ability. The Matrigel-free Transwell chamber was prepared according to the instructions. The above cells (~1×105 cells) and 100 μL 0.2% BSA serum-free culture medium were added to the upper chamber, and 500 μL FBS-containing culture medium was added to the lower chamber. These cells were incubated at 37℃. After 8 hours, the filter membrane was taken out and fixed with 4% paraformaldehyde. The non-adherent cells on the filter membrane were wiped off with a cotton swab, and cells that penetrated to the back of the filter membrane were counted after staining.
2.7 MTT assay
The cells in the logarithmic growth phase of each group were taken and inoculated onto a 96-well plate with ~5000 cells/well. For each group, 5 duplicate wells and corresponding zero-setting wells were arranged. During the time periods of 6 h, 12 h, 24 h, 48 h, and 72 h, 20 μL of MTT solution was added to each well, and after 4 h of incubation, 150 μL of DMSO was added. An enzyme-linked immunosorbent assay meter measured the absorbance value for each well at 490 nm. Cell inhibition rate= (1-absorbance value of experimental group/absorbance value of control group)×100%.
2.8 Scarification test
Cells at a density of about 2.5×105 cells/well were inoculated onto a 24-well plate and then cultured for 12 h. After the above processing in each group, a “cross” scratch was made with a yellow pipette tip. The scratch was photographed under an inverted microscope, and the scratch width at this time point was measured (denoted as Wbefore). After they were cultured in the incubator for 24 h, the scratch width was measured again (denoted as Wafter), and the migration distance was calculated (migration distance= Wbefore-Wafter).
2.9 Flow cytometry
7.5×105 cells/well were inoculated onto a 6-well plate, and after grouping, they were prepared into cell suspensions (~1-5×105 cells). 500 µL of Binding Buffer was used to suspend the cells, followed by 5 µL of Annexin V-APC. After mixing, 5 μL of 7-AAD was added with gently mixing. The reaction was conducted at room temperature in the dark for 5-15 minutes (min). Cell apoptosis was detected within 1 h on the equipment (Facscallbar flow cytometry, Becton Dickinson, USA).
2.10 Tunel experiment
7.5×105 cells/well were inoculated onto a 6-well plate. After grouping, the cells were collected, and the cell samples (cell smears or round coverslips) were naturally air-dried. They were immersed in 4% paraformaldehyde fixative for 30 min or overnight to improve cell permeability. This was followed by PBS soaks for 3 min×3. 1% Triton-100 was added to the samples, and they were kept at room temperature for 15 min. Next, they were soaked in PBS for 5 min and washed 3 times. The samples were then treated with 3% H2O2-methanol solution for 15 min, soaked in PBS for 5 min, and washed 3 times. 100 µL TdT enzyme reaction solution was added dropwise into each sample, kept in the dark and moistened, and reacted at 37℃ for 1 h, followed by soaking in PBS for 5 min and washing 3 times. 100 µL Streptavadin-FITC was added dropwise, kept in the dark and moistened, and reacted at 37 ℃ for 30 min. Then it was soaked in PBS for 5 min and washed 3 times. The sections were put in Hoechst staining solution to stain for 10 min and rinsed with distilled water. After sealing, the sections were observed under a fluorescence microscope.
2.11 In vivo tumor-bearing experiment
12 BALB/c nude mice (13-15 g weight and 4-6-week age), with 6 males and 6 females, were selected and randomly divided into 2 groups (N=6). 5×107 Pca cells were taken and suspended in 200 μL PBS and then injected subcutaneously in the groin of BALB/c nude mice in each group. The tumor diameter was measured every 3 days. Once the tumor diameter reached 0.5 cm, the tumor was injected with ①siLinc00467+ lip3000; ②overexpressed TRAF5 plasmid + lip3000; ③siLinc00467 and overexpressed TRAF5 plasmid + lip3000; ④ Equal volume of PBS, 2 times/week, continuously for 4 weeks. The tumor volume was measured continuously for 8 weeks (tumor volume = (length × width2) × 0.5). After 8 weeks, the mice were euthanized by cervical dislocation under 40 mg/kg pentobarbital anesthesia. and the tumors were taken out and weighed. All animal studies were conducted in accordance with the Guide for the Care and Use of Laboratory Animals of China. All experiments involving animal were reviewed and approved by The Nanchang University Ethics Committee of Medical Laboratory Animals.
2.12 Statistical analysis
SPSS 21.0 statistical software was used to analyze the obtained data, and measurement data were expressed as mean±standard deviation (M±SD). The results of multiple groups were compared using the one-way analysis of variance to test and analyze the mean values among groups. If P <0.05, the result is considered to be statistically significant.