General methods
In this work, all purchased materials were used directly without further purification. All reactions were detected on silica gel plates GF254 (Qingdao Haiyang Chemical, China) under UV light (365 nM or 254 nM). The purification of the products was carried out using column chromatography (silica gel 200–300 mesh). Melting points were determined on an X-5 micromelting apparatus and are uncorrected. The 1H-NMR and 13C-NMR spectra of the products were recorded on a Bruker 400 MHz spectrometer. The analysis of spectrums was based on the solvent (2.5 ppm for 1H- DMSO-d6 or 7.26 ppm for 1H-CDCl3). Coupling constants are expressed in Hz. The HRMS spectrums were conducted on an Agilent 6510 Quadrupole Time of-Flight LC/MS deliver.
Synthesis of compound 9a
To a round bottom flask were added Indomethacin 5 (0.36 g, 1 mmol) and 20 mL dichloromethane (DCM). When Indomethacin dissolved in DCM, N,N-Diisopropylethylamine (DIEA) (0.26 g, 2 mmol) was added and stirred for 10 min. Then, 2-(7-Azabenzotriazol-1-yl)-N, N, N', N'-tetramethyluronium hex- afluorophosphate (HATU) (0.46 g, 1.2 mmol) was added. The mixture was stirred at room temperature for 30 min. To this solution was added 3-nitro-4-chlorobenzenesulfonamide 7a (0.26 g, 1.1 mmol). The resulting solution was stirred at room temperature for 12 h. Upon completion of the reaction (monitored by TLC), the DCM was added, then organic layer was washed with 1 M citric acid solution and saturated sodium chloride solution, and then concentrated under vacuum. The residue was purified by silica gel chromatography to give the pure product 9a in 46% yield.
N-((4-chloro-3-nitrophenyl)sulfonyl)-2-(1-(4-chlorobenzoyl)-5-methoxy-2-methyl-1H-indol-3-yl)acetamide (9a)
White powder, yield: 46%. Mp: 174-176°C. 1H-NMR (400 MHz, DMSO-d6) δ 12.83 (s, 1H), 8.54 (s, 1H), 8.16-8.18 (d, 1H, J = 8.0 Hz), 8.02-8.04 (d, 1H, J = 8.0 Hz), 7.65 (s, 4H), 6.87-6.89 (d, 2H, J = 8.0 Hz), 6.68-6.70 (d, 1H, J = 8.0 Hz), 3.70-3.73 (d, 5H, J = 12.0 Hz), 2.15 (s, 3H). 13C-NMR (100 MHz, DMSO-d6) δ 169.79, 168.28, 156.01, 141.40, 134.24, 131.77, 131.64, 129.53, 127.50, 126.68, 115.08, 112.67, 111.87, 101.86, 55.83, 31.59, 13.65. HRMS (ESI) calculated for C25H19Cl2N3O7S([M - H]-):575.0394, found 575.0315
2-(1-(4-chlorobenzoyl)-5-methoxy-2-methyl-1H-indol-3-yl)-N-((4-nitrophenyl)sulfonyl)acetamide (9b)
White powder, yield: 98%. Mp: 182-183°C. 1H-NMR (400 MHz, DMSO-d6) δ 12.80 (s, 1H), 8.40-8.42 (d, 2H, J = 8.0 Hz), 8.16-8.18 (d, 2H, J = 8.0 Hz), 7.64 (s, 4H), 6.84-6.88 (m, 2H), 6.67-6.69 (m, 1H), 3.69-3.73 (d, 5H, J = 12.0 Hz), 2.15 (s, 3H). 13C-NMR (100 MHz, DMSO-d6) δ 169.87, 168.27, 155.95, 150.72, 144.77, 138.18, 136.30, 134.46, 131.63, 130.71, 129.71, 129.52, 124.89, 115.01, 112.45, 111.60, 102.13, 55.82, 31.70, 13.65. HRMS (ESI) calculated for C25H20ClN3O7S([M - H]-):541.0783, found 541.0711.
2-(1-(4-chlorobenzoyl)-5-methoxy-2-methyl-1H-indol-3-yl)-N-(phenylsulfonyl)acetamide (9c)
White powder, yield: 60%. Mp: 188-190°C. 1H-NMR (400 MHz, DMSO-d6) δ 12.47 (s, 1H), 7.91-7.93 (d, 2H, J = 8.0 Hz), 7.60-7.63 (m, 7H), 6.86-6.93 (m, 2H), 6.67-6.70 (dd, 1H, J = 9.0 Hz, 2.0 Hz), 3.69-3.70(d, 5H, J = 4.0 Hz), 2.11(s, 3H). 13C-NMR (100 MHz, DMSO-d6) δ 169.48, 168.27, 156.02, 139.69, 138.14, 136.16, 134.51, 134.17, 131.62, 130.89, 130.61, 129.57, 129.43, 127.94, 115.04, 112.82, 111.87, 102.03, 55.87, 31.55, 13.62. HRMS (ESI) calculated for C25H21ClN2O5S ([M - H]-):495.0787, found 495.0786.
2-(1-(4-chlorobenzoyl)-5-methoxy-2-methyl-1H-indol-3-yl)-N-((4-chlorophenyl)sulfonyl)acetamide (9d)
White powder, yield: 42%. Mp: 171-173°C. 1H-NMR (400 MHz, DMSO-d6) δ 12.57 (s, 1H), 7.92-7.94 (d, 2H, J = 8.0 Hz), 7.65-7.70 (m, 6H), 6.88-6.90 (m, 2H), 6.68-6.71 (m, 1H), 3.71 (s, 5H), 2.13 (s, 3H). 13C-NMR (100 MHz, DMSO-d6) δ 169.62, 168.27, 156.00, 139.20, 138.42, 138.17, 136.20, 134.50, 131.62, 130.85, 130.63, 130.00, 129.75, 129.52, 115.04, 112.69, 111.78, 102.03, 55.84, 31.60, 12.63. HRMS (ESI) calculated for C25H20Cl2N2O5S([M - H]-):529.0397, found 529.0395.
N-((3-bromophenyl)sulfonyl)-2-(1-(4-chlorobenzoyl)-5-methoxy-2-methyl-1H-indol-3-yl)acetamide (9e)
White powder, yield: 49%. Mp: 195-196°C. 1H-NMR (400 MHz, DMSO-d6) δ 12.64 (s, 1H), 7.92-8.01 (m, 3H), 7.56-7.65 (m, 5H), 6.88-6.93 (m, 2H), 6.68-6.71 (dd, 1H, J = 9.0 Hz, 2.0 Hz), 3.72 (s, 5H), 2.14 (s, 3H). 13C-NMR (100 MHz, DMSO-d6) δ 169.76, 168.27, 156.04, 141.54, 138.16, 137.09, 136.22, 134.50, 131.93, 131.62, 130.84, 130.61, 130.26, 129.53, 127.01, 122.25, 115.07, 112.67, 111.88, 101.90, 55.86, 31.61, 13.64. HRMS (ESI) calculated for C25H20BrClN2O5S([M - H]-):572.9892, found 572.9891.
2-(1-(4-chlorobenzoyl)-5-methoxy-2-methyl-1H-indol-3-yl)-N-((3-fluorophenyl)sulfonyl)acetamide (9f)
White powder, yield: 59%. Mp: 182-183°C. 1H-NMR (400 MHz, DMSO-d6) δ 12.60 (s, 1H), 7.75-7.77 (m, 1H), 7.57-7.68 (m, 7H), 6.85-6.90 (m, 2H), 6.65-6.68 (m, 1H), 3.69-3.70 (d, 5H, J = 4.0 Hz), 2.11 (s, 3H). 13C-NMR (100 MHz, DMSO-d6) δ 169.71, 168.27, 163.08, 160.61, 156.02, 141.62, 138.15, 136.23, 134.50, 132.06, 131.63, 130.84, 130.61, 129.52, 124.19, 121.36, 115.10, 115.06, 114.86, 112.68, 111.84, 101.93, 55.83, 31.60, 13.63. HRMS (ESI) calculated for C25H20ClFN2O5S ([M - H]-):513.0692, found 513.0689.
2-(1-(4-chlorobenzoyl)-5-methoxy-2-methyl-1H-indol-3-yl)-N-((3-(trifluoromethyl)phenyl)sulfonyl)acetamide (9g)
White powder, yield: 87%. Mp: 176-177°C. 1H-NMR (400 MHz, DMSO-d6) δ 12.71 (s, 1H), 8.24-8.26 (d, 1H, J = 8.0 Hz), 8.12-8.16 (t, 2H, J = 8.0 Hz ), 7.87-7.91 (t, 1H, J = 8.0 Hz), 7.64 (s, 4H), 6.87-6.92 (m, 2H), 6.68-6.70 (m, 1H, J = 8.0 Hz), 3.70-3.73 (d, 5H, J = 12.0 Hz), 2.12 (s, 3H). 13C-NMR (100 MHz, DMSO-d6) δ 169.79, 168.28, 156.01, 138.14, 134.24, 131.78, 131.64, 130.58, 129.54, 127.49, 126.68, 115.08, 112.67, 110.87, 101.86, 55.83, 31.59, 12.65. HRMS (ESI) calculated for C26H20ClF3N2O5S ([M - H]-):563.0660, found 563.0659.
2-(1-(4-chlorobenzoyl)-5-methoxy-2-methyl-1H-indol-3-yl)-N-((3-(difluoromethoxy)phenyl)sulfonyl)acetamide (9h)
White powder, yield: 51%. Mp: 108-110°C. 1H-NMR (400 MHz, DMSO-d6) δ 12.51 (s, 1H), 7.97-7.99 (d, 2H, J = 8.0 Hz), 7.65 (s, 4H), 7.37-7.42 (t, 2H), 6.87-6.92 (m, 2H), 6.68-6.71 (m, 1H), 3.69-3.71 (d, 5H, J = 8.0 Hz), 2.14 (s, 3H). 13C-NMR (100 MHz, DMSO-d6) δ 171.51, 168.33, 156.06, 138.13, 135.89, 134.57, 131.65, 131.01, 130.66, 129.54, 115.09, 113.23, 111.86, 102.08, 55.87, 52.27, 29.59, 13.65. HRMS (ESI) calculated for C26H21ClF2N2O6S ([M - H]-):561.0704, found 561.0703.
2-(1-(4-chlorobenzoyl)-5-methoxy-2-methyl-1H-indol-3-yl)-N-((3-ethylphenyl)sulfonyl)acetamide (9i)
White powder, yield: 56%. Mp: 175-176°C. 1H-NMR (400 MHz, DMSO-d6) δ 12.41 (s, 1H), 7.82-7.84 (d, 2H, J = 8.0 Hz), 7.64 (s, 4H), 7.41-7.43 (d, 2H, J = 8.0 Hz), 6.88-6.94 (m, 2H), 6.68-6.71 (m, 1H), 3.68-3.71 (d, 5H, J = 12.0 Hz), 2.64-2.70 (m, 2H), 2.12 (s, 3H), 1.15-1.19 (t, 3H, J = 8.0 Hz). 13C-NMR (100 MHz, DMSO-d6) δ 169.43, 168.27, 156.01, 150.61, 138.15, 137.10, 136.13, 134.52, 131.61, 130.90, 130.61, 129.52, 128.84, 128.12, 115.03, 112.89, 111.83, 102.00, 55.84, 31.58, 28.50, 15.41, 13.64. HRMS (ESI) calculated for C27H25ClN2O5S([M - H]-):523.1099, found 523.1097.
2-(1-(4-chlorobenzoyl)-5-methoxy-2-methyl-1H-indol-3-yl)-N-(thiophen-2-ylsulfonyl)acetamide (9j)
White powder, yield: 90%. Mp: 217-219°C. 1H-NMR (400 MHz, DMSO-d6) δ 12.58 (s, 1H), 7.99-8.01 (m, 1H), 7.75-7.76 (m,1H), 7.61-7.62 (m, 4H), 7.14-7.16 (t, 1H, J = 4.0 Hz), 6.92 (s, 1H), 6.85-6.87 (d, 1H, J = 8.0 Hz), 6.65-6.68 (m, 1H), 3.69 (s, 5H), 2.12 (s, 3H). 13C-NMR (100 MHz, DMSO-d6) δ 169.45, 168.29, 156.05, 139.92, 138.16, 136.20, 135.26, 134.78, 134.52, 131.63, 130.90, 130.64, 129.53, 127.96, 115.06, 112.79, 111.93, 101.97, 55.87, 31.61, 13.64. HRMS (ESI) calculated for C23H19ClN2O5S2 ([M - H]-):501.0351, found 501.0351.
2-(1-(4-chlorobenzoyl)-5-methoxy-2-methyl-1H-indol-3-yl)-N-((2-chlorophenyl)sulfonyl)acetamide (9k)
White powder, yield: 86%. Mp: 174-177°C. 1H-NMR (400 MHz, DMSO-d6) δ 12.89 (s, 1H), 8.07-8.09 (d, 1H, J = 8.0 Hz), 7.63-7.68 (m, 6H), 7.56-7.58 (m, 1H), 6.96-6.97 (d, 1H, J = 4.0 Hz), 6.87-6.89 (d, 1H, J = 8.0 Hz), 6.68-6.70 (m, 1H), 3.74-3.77 (d, 5H, J = 12.0 Hz), 2.16 (s, 3H). 13C-NMR (100 MHz, DMSO-d6) δ 169.49, 168.27, 156.01, 138.14, 136.67, 136.26, 135.72, 134.48, 132.74, 132.14, 131.63, 131.06, 130.88, 130.56, 129.52, 128.19, 115.06, 112.67, 112.01, 101.76, 55.84, 31.23, 13.66. HRMS (ESI) calculated for C25H20Cl2N2O5S([M - H]-):529.0397, found 529.0396.
2-(1-(4-chlorobenzoyl)-5-methoxy-2-methyl-1H-indol-3-yl)-N-((3-chlorophenyl)sulfonyl)acetamide (9l)
White powder, yield: 66%. Mp: 192-195°C. 1H-NMR (400 MHz, DMSO-d6) δ 12.62 (s, 1H), 7.86-7.87 (d, 2H, J = 4.0 Hz), 7.76-7.78 (d, 1H, J = 8.0 Hz), 7.62-7.64 (m, 5H), 6.85-6.90 (m, 2H), 6.65-6.68 (m, 1H), 3.69 (s, 5H), 2.11 (s, 3H). 13C-NMR (100 MHz, DMSO-d6) δ 169.79, 168.28, 156.01, 141.40, 138.14, 136.22, 134.49, 134.24, 134.05, 131.78, 131.64, 130.58, 129.54, 127.49, 126.68, 115.08, 112.67, 111.87, 101.86, 55.83, 31.59, 13.65. HRMS (ESI) calculated for C25H20Cl2N2O5S([M - H]-):529.0397, found 529.0393.
2-(1-(4-chlorobenzoyl)-5-methoxy-2-methyl-1H-indol-3-yl)-N-((3-methoxyphenyl)sulfonyl)acetamide (9m)
White powder, yield: 54%. Mp: 153-155°C. 1H-NMR (400 MHz, DMSO-d6) δ 12.46 (s, 1H), 7.64 (s, 4H), 7.50-7.52(m, 2H), 7.37 (s, 1H), 7.25-7.27 (d, 1H, J = 8.0 Hz), 6.87-6.94 (m, 2H), 6.68-6.70 (m, 1H), 3.78 (s, 3H), 3.70-3.71 (d, 5H, J = 4.0 Hz), 2.13 (s, 3H). 13C-NMR (100 MHz, DMSO-d6) δ 169.60, 168.28, 156.59, 156.00, 141.00, 138.13, 136.18, 134.51, 131.64, 130.88, 130.58, 129.53, 119.85, 119.80, 115.07, 112.89, 112.86, 111.85, 101.90, 56.05, 55.80, 31.63, 13.67. HRMS (ESI) calculated for C26H23ClN2O6S([M - H]-):525.0892, found 525.0888.
The synthesis of 10a-10m is similar to 9a.
N-(4-bromophenyl)-2-(1-(4-chlorobenzoyl)-5-methoxy-2-methyl-1H-indol-3-yl)acetamide (10a)
Light yellow powder, yield: 49%. Mp: 184-186°C. 1H-NMR (400 MHz, DMSO-d6) δ 10.37 (s, 1H), 7.64-7.71 (m, 4H), 7.58-7.60 (d, 2H, J = 8.0 Hz), 7.48-7.50 (d, 2H, J = 8.0 Hz), 7.17 (s, 1H), 6.92-6.94 (d, 1H, J = 8.0 Hz), 6.71-6.73 (d, 1H, J = 8.0 Hz), 3.74-3.76 (d, 5H, J = 8.0 Hz), 2.28 (s, 3H,). 13C-NMR (100 MHz, DMSO-d6) δ 169.16, 168.35, 156.03, 138.93, 138.09, 135.94, 134.64, 132.04, 131.64, 130.72, 129.54, 121.64, 114.35, 102.38, 55.90, 32.47, 13.88. HRMS (ESI) calculated for C25H20BrClN2O3([M - H]-):509.0273, found 509.0271.
2-(1-(4-chlorobenzoyl)-5-methoxy-2-methyl-1H-indol-3-yl)-N-(4-(trifluoromethyl)phenyl)acetamide (10b)
White powder, yield: 20%. Mp: 207-209°C. 1H-NMR (400 MHz, DMSO-d6) δ 10.61 (s, 1H), 7.82-7.84 (d, 2H, J = 8.0 Hz), 7.65-7.71 (m, 6H), 7.17-7.18 (d, 1H, J = 4.0 Hz), 6.92-6.94 (d, 1H, J = 8.0 Hz), 6.71-6.74 (d, 1H, J = 8.0 Hz),3.81 (s, 2H), 3.75 (s, 3H), 2.29 (s, 3H). 13C-NMR (100 MHz, DMSO-d6) δ 169.63, 168.35, 156.04, 138.09, 136.01, 134.64, 131.66, 130.71, 129.55, 126.57, 119.53, 114.20, 111.67, 102.35, 55.90, 32.50, 13.89. HRMS (ESI) calculated for C26H20ClF3N2O3([M - H]-): 499.1041, found 499.1041.
2-(1-(4-chlorobenzoyl)-5-methoxy-2-methyl-1H-indol-3-yl)-N-(3,4-dichlorophenyl)acetamide (10c)
Yellow powder, yield: 16%. Mp: 184-185°C. 1H-NMR (400 MHz, DMSO-d6) δ 10.52 (s, 1H), 8.01 (s, 1H), 7.67-7.71 (m, 4H), 7.57-7.59 (d,, 1H, J = 4.0 Hz), 7.50-7.52 (d, 1H, J = 8.0 Hz), 7.15 (s, 1H), 6.92-6.94 (d, 1H, J = 8.0 Hz), 6.71-6.74 (d, 1H, J = 12.0 Hz), 3.75-3.78 (d, 5H, J = 12.0 Hz), 2.27 (s, 3H). 13C-NMR (100 MHz, DMSO-d6) δ 169.51, 168.34, 156.04, 139.65, 138.10, 136.03, 134.62, 131.66, 131.46, 131.28, 131.20, 130.71, 129.55, 125.17, 120.83, 119.70, 115.09, 114.06, 111.67, 102.33, 55.91, 32.44, 13.88. HRMS (ESI) calculated for C25H19Cl3N2O3([M - H]-):499.0388, found 499.0388
2-(1-(4-chlorobenzoyl)-5-methoxy-2-methyl-1H-indol-3-yl)-N-(2-chlorophenyl)acetamide (10d)
White powder, yield: 10%. Mp: 151-152°C. 1H-NMR (400 MHz, DMSO-d6) δ 9.70 (s, 1H), 7.64-7.71 (m, 5H), 7.49-7.51 (d, 1H, J = 8.0 Hz), 7.18-7.34 (m, 3H), 6.93-6.96 (d, 1H, J = 12.0 Hz), 6.71-6.74 (dd, 1H, J1 = 4.0 Hz, J2 = 8.0 Hz), 3.86 (s, 2H), 3.77 (s, 3H), 2.30 (s, 3H). 13C-NMR (100 MHz, DMSO-d6) δ 169.30, 168.35, 156.06, 138.09, 135.99, 135.29, 134.66, 131.67, 131.26, 130.75, 129.93, 129.53, 127.92, 126.91, 126.67, 115.08, 114.38, 111.90, 102.29, 55.90, 31.86, 13.89. HRMS (ESI) calculated for C25H20Cl2N2O3([M - H]-):465.0778, found 465.0777
2-(1-(4-chlorobenzoyl)-5-methoxy-2-methyl-1H-indol-3-yl)-N-phenylacetamide (10e)
Light green powder, yield: 65%. Mp: 165-166°C. 1H-NMR (400 MHz, DMSO-d6) δ 10.24 (s, 1H), 7.59-7.71 (m, 6H), 7.28-7.32 (t, 2H, J = 8.0 Hz), 7.19-7.20 (d, 1H, J = 4.0 Hz), 7.03-7.06 (m, 1H), 6.92-6.94 (d, 1H, J = 8.0 Hz), 6.71-6.73(d, 1H, J = 8.0 Hz), 3.75 (s, 5H), 2.29 (s, 3H). 13C-NMR (100 MHz, DMSO-d6) δ 168.94, 168.35, 156.02, 139.60, 138.06, 135.87, 134.68, 131.65, 131.37, 130.72, 129.54, 129.22, 123.77, 119.68, 115.07, 114.60, 111.63, 102.42, 55.90, 32.49, 13.91. HRMS (ESI) calculated for C25H21ClN2O3([M - H]-):431.1167, found 431.1164.
2-(1-(4-chlorobenzoyl)-5-methoxy-2-methyl-1H-indol-3-yl)-N-(4-chlorophenyl)acetamide (10f)
White powder, yield: 14%. Mp: 189-190°C. 1H-NMR (400 MHz, DMSO-d6) δ 10.38 (s, 1H), 7.63-7.71 (m, 6H), 7.35-7.38 (d, 2H, J = 12.0 Hz), 7.17-7.18 (d, 1H, J = 4.0 Hz), 6.92-6.94 (d, 1H, J = 8.0 Hz), 6.71-6.73 (d, 1H, J = 8.0 Hz), 3.76 (s, 5H), 2.27 (s, 3H). 13C-NMR (100 MHz, DMSO-d6) δ 169.11, 168.34, 156.03, 138.54, 138.08, 134.66, 131.66, 130.71, 129.54, 129.14, 121.22, 114.36, 110.66, 102.37, 55.90, 32.45, 13.90. HRMS (ESI) calculated for C25H20Cl2N2O3([M - H]-):465.0778, found 465.0775.
2-(1-(4-chlorobenzoyl)-5-methoxy-2-methyl-1H-indol-3-yl)-N-(4-methoxyphenyl)acetamide (10g)
White powder, yield: 17%. Mp: 168-170°C. 1H-NMR (400 MHz, DMSO-d6) δ 10.09 (s, 1H), 7.64-7.71 (m, 4H), 7.48-7.51 (m, 2H), 7.19 (s, 1H), 6.86-6.94 (m, 3H), 6.70-6.73 (dd, 1H, J1 = 4.0 Hz, J2 = 8.0 Hz), 3.75 (s, 3H), 3.71 (s, 5H), 2.28 (s, 3H). 13C-NMR (100 MHz, DMSO-d6) δ 168.43, 168.34, 156.02, 155.69, 138.05, 135.81, 134.69, 132.73, 131.65, 131.38, 130.73, 129.53, 121.28, 115.06, 114.72, 114.30, 111.62, 102.44, 55.89, 55.60, 32.39, 13.91. HRMS (ESI) calculated for C26H23ClN2O4 ([M - H]-):461.1273, found 461.1273.
2-(1-(4-chlorobenzoyl)-5-methoxy-2-methyl-1H-indol-3-yl)-N-(p-tolyl)acetamide (10h)
Yellow powder, yield: 60%. Mp: 163-164°C. 1H-NMR (400 MHz, DMSO-d6) δ 10.15 (s, 1H), 7.64-7.71 (m, 4H), 7.47-7.49 (d, 2H, J = 8.0 Hz), 7.19 (s, 1H), 7.09-7.11 (d, 2H, J = 8.0 Hz), 6.92-6.94 (d, 1H, J = 8.0Hz), 6.70-6.73 (dd, 1H, J1 = 4.0 Hz, J2 = 8.0 Hz), 3.73-3.75 (d, 5H, J = 8.0 Hz), 2.28 (s, 3H), 2.24 (s, 3H). 13C-NMR (100 MHz, DMSO-d6) δ 168.69, 168.34, 156.01, 138.05, 137.09, 135.83, 134.69, 132.67, 131.65, 131.37, 130.72, 129.58, 129.53, 119.72, 115.06, 114.67, 111.62, 102.43, 55.89, 32.46, 20.91, 13.91. HRMS (ESI) calculated for C26H23ClN2O3([M - H]-):445.1324, found 445.1323.
2-(1-(4-chlorobenzoyl)-5-methoxy-2-methyl-1H-indol-3-yl)-N-(3-chlorophenyl)acetamide (10i)
White powder, yield: 21%. Mp: 190-191°C. 1H-NMR (400 MHz, DMSO-d6) δ 10.43 (s, 1H), 7.83 (s, 1H), 7.64-7.71 (m, 4H), 7.45-7.48 (d, 1H, J = 12.0 Hz), 7.32-7.36 (t, 1H, J = 8.0 Hz), 7.10-7.17 (m, 2H), 6.92-6.94 (d, 1H, J = 8.0 Hz), 6.71-6.74 (d, 1H, J = 12.0 Hz), 3.75-3.77 (d, 5H, J = 8.0 Hz), 2.28 (s, 1H). 13C-NMR (100 MHz, DMSO-d6) δ 169.38, 168.34, 156.04, 141.01, 138.09, 135.98, 133.54, 131.66, 130.97, 129.55, 123.49, 119.11, 118.03, 103.36, 55.90, 32.47, 13.89. HRMS (ESI) calculated for C25H20Cl2N2O([M - H]-):465.0778, found 465.0776.
N-(3-chloro-4-fluorophenyl)-2-(1-(4-chlorobenzoyl)-5-methoxy-2-methyl-1H-indol-3-yl)acetamide (10j)
White powder, yield: 8%. Mp: 192-194°C. 1H-NMR (400 MHz, DMSO-d6) δ 10.45 (s, 1H), 7.93-7.95 (m, 1H), 7.65-7.71 (m. 4H), 7.48-7.50 (m, 1H), 7.36-7.41 (m, 1H), 7.16 (s, 1H), 6.92-6.94 (d, 1H, J = 8.0 Hz), 6.71-6.73 (d, 1H, J = 8.0 Hz), 3.75-3.76 (d, 5H, J = 4.0 Hz), 2.28 (s, 3H). 13C-NMR (100 MHz, DMSO-d6) δ 169.26, 168.34, 156.03, 138.10, 136.00, 134.63, 131.66, 131.29, 130.71, 129.55, 121.04, 114.16, 111.66, 102.33, 55.90, 32.37, 13.89. HRMS (ESI) calculated for C25H19Cl2FN2O3([M - H]-):483.0683, found 483.0683.
2-(1-(4-chlorobenzoyl)-5-methoxy-2-methyl-1H-indol-3-yl)-N-(naphthalen-1-yl)acetamide (10k)
Light yellow powder, yield: 6%. Mp: 175-176°C. 1H-NMR (400 MHz, DMSO-d6) δ 10.18 (s, 1H), 8.07-8.09 (m, 1H), 7.94-7.96 (m, 1H), 7.64-7.79 (m, 6H), 7.47-7.56 (m, 3H), 7.32-7.33 (d, 1H, J = 4.0 Hz), 6.95-6.98 (d, 1H, J = 12.0 Hz), 6.73-6.76 (dd, 1H, J1 = 4.0 Hz, J2 = 8.0 Hz), 3.94 (s, 2H), 3.79 (s, 3H), 2.35 (s, 3H). 13C-NMR (100 MHz, DMSO-d6) δ 169.72, 168.38, 156.10, 138.06, 134.16, 131.67, 129.53, 128.67, 126.54, 126.29, 126.05, 123.11, 122.50, 102.22, 55.91, 32.07, 13.99. HRMS (ESI) calculated for C25H20Cl2N2O([M - H]-):481.1324, found 481.1323.
2-(1-(4-chlorobenzoyl)-5-methoxy-2-methyl-1H-indol-3-yl)-N-(4-nitrophenyl)acetamide (10l)
White powder, yield: 14%. Mp: 190-191°C. 1H-NMR (400 MHz, DMSO-d6) δ 10.86 (s, 1H), 8.22-8.25 (m, 2H), 7.85-7.89 (m, 2H), 7.65-7.71 (m, 4H), 7.17 (s, 1H), 6.91-6.94 (m, 1H), 6.71-6.74 (dd, 1H, J1 = 4.0 Hz, J2 = 8.0 Hz), 3.85 (s, 2H), 3.75-3.76 (d, 3H, J = 4.0 Hz), 2.29 (s, 3H). 13C-NMR (100 MHz, DMSO-d6) δ 169.99, 168.34, 156.05, 145.74, 142.66, 138.11, 131.67, 130.70, 129.55, 125.53, 119.32, 113.95, 111.70, 102.31, 55.90, 32.55, 13.90. HRMS (ESI) calculated for C25H20ClN3O5([M - H]-):476.1018, found 476.1018.
2-(1-(4-chlorobenzoyl)-5-methoxy-2-methyl-1H-indol-3-yl)-N-(pyridin-2-yl)acetamide (10m)
Yellow powder, yield: 17%. Mp: 153-154°C. 1H-NMR (400 MHz, DMSO-d6) δ 10.08 (s, 1H), 7.64-7.71 (m, 4H), 7.47-7.51 (m, 2H), 7.19-7.20 (d, 1H, J = 4.0 Hz), 6.84-6.94 (m, 3H), 6.70-6.73 (dd, 1H, J1 = 4.0 Hz, J2 = 8.0 Hz), 3.67-3.76 (m, 5H), 2.28 (s, 3H). 13C-NMR (100 MHz, DMSO-d6) δ 169.88, 168.35, 156.03, 152.47, 148.47, 138.68, 138.05, 135.99, 134.67, 131.65, 131.36, 130.71, 129.53, 119.96, 115.05, 114.41, 113.88, 111.62, 102.52, 55.89, 32.13, 13.92. HRMS (ESI) calculated for C24H20ClN3O3([M - H]-):432.1120, found 432.1119.
Binding Assay for measuring the binding of Bcl-2 family proteins with the compounds
TR-FRET Assay
The assay was performed by TR-FRET technology using a peptide-ligand substrate and a recombinant Bcl-2 or Mcl-1 protein. The TR-FRET signal in the assay is related with the amount of ligand binding to Bcl-2. All of the binding reactions were carried out under room temperature. The 20 µl reaction mixture in buffer contains the indicated amount of the compound, Bcl-2 protein, ligand, and the reaction dyes. The reaction mixture were incubated for 120 min before reading the TR-FRET signal. For the background, ligand was replaced with assay buffer. Fluorescence signals for both the acceptor and donor dyes were measured on a Tecan Infinite M1000 plate reader. TR-FRET was recorded as the ratio of the fluorescence of the donor and the acceptor dyes.
FP Assay
The FP-based binding assay for Bcl-xL was carried out using Bcl-2 protein, 5-FAM-Bid-BH3 peptide and the compounds. The tested compounds and Bcl-xL protein were precultured in the assay buffer (1XPBS) for 30 min at room temperature. Then, 5-FAM-Bid-BH3 peptide was added and incubated for another 20 min.Under the condition of an excitation wavelength (485 nm) and an emission wavelength (535 nm), the polarization values were monitored by the Tecan GENios-Pro Injector Reader. In the binding experiments, the compounds were prepared in dimethylsulfoxide (DMSO) at seven concentrations (1 nM, 10 nM, 100 nM, 1 µM, 10 µM, 50 µM, 100 µM). The final concentrations of 5-FAM-Bid-BH3 peptide and Bcl-xLprotein were 10 nM and 125 nM, respectively. Finally, the IC50 value of all compounds were calculated and obtained.
Cell viability assay
The antiproliferative activities of the representative target compounds and the positive control were measured by using the CCK8 (Cell Counting Kit8) assay. Briefly, the three tumor cells (PC-3, Jurkat, and MDA-MB-231) were cultured in DMEM or RPMI1640 medium with 10% FBS in humidified incubator (37°C, 5% CO2). When the cells grow well, they were seeded in 96-well plates with a density of 4000-6000 cells per well and then incubated for 12 h. Subsequently, the indicated compounds with different concentrations were added and mixed with the growing cells. After indicated for 72 h, 15 µL CCK8 solution was added into each well and the plates were incubated for a further 4 h. The final optical density was monitored by a microtiter-plate reader at 450 nm.
Docking study
By using the Surflex-Dock program of Discover Studiuos2019R2, the molecular docking of 9k was performed. The Bcl-2 and Mcl-1 downloaded protein from PDB database is dewatered and hydrotreated, the chosen compound was optimized to the best dominant conformation, and other parameters were set at default values. Then, the docking was conducted. The Bcl-2 (PDB code: 2O2F) and Mcl-1 (PDB code: 3WIX) proteins were down loaded from the Protein Data Bank .