3.1 Through the treatment of traditional Chinese medicine targets and disease targets
According to the database, a total of 147 active ingredients of traditional Chinese medicine were collected, including 6 aconite, 4 calamus, 6 cassia twig, 5 atractylodes, 7 notoginseng, 23 epimedium, 10 rhubarb, and 86 licorice. A total of 2846 TCM targets were obtained by standardizing the targets and removing duplicate targets through the STRING platform. Finally, a total of 277 TCM targets were obtained. A total of 3777 IS disease targets were collected through the disease database. Taking the intersection of traditional Chinese medicine targets and disease targets, 212 intersection targets were obtained (Figure 1).
3.2 Drug-ingredient-target-disease network graph analysis
The drug-ingredient-target-disease (IS) network of Wenyang Huayu Formula was constructed by Cytoscape 3.7.2 software (Figure 2). There were 2667 edges and 421 nodes in the whole network, including 8 traditional Chinese medicines, 52 active ingredients, 277 potential targets, and 1 disease. The Triangle represents the name of Wenyang Huayufa Formula, the Diamond node represents the name of the traditional Chinese medicine, the Hexagon node represents the ingredient, the Ellipse node represents the potential target, the V-shaped node represents the disease, and the edge represents the interaction relationship between the nodes. It can be seen that Wenyang Huayu Formula may treat IS in the form of multi-component, multi-target and multi-channel intervention. PTGS2, ESR1, CALM2, HSP90AA1, AR and other genes may be important potential targets. Quercetin, kaempferol, luteolin, wogonin,7-Methoxy-2-methylisoflavone,beta-sitosterol,formononetin,C-Homoerythrinan,1,6-didehydro-3,15,16-trimethoxy-, (3.beta.)-, Isorhamnetin, naringenin, etc. may be important potential active ingredients.
3.3 PPI network graph analysis
Using the STRING platform, PPI processing was performed on the intersection targets, and the network topology analysis was performed on the obtained data with Cytoscape, and 212 nodes and 4537 edges were obtained, with an average degree value of 42.8 (Figure 3). The interaction information was imported into Cytoscape 3.7.1 software, the median degree value was 43,88 targets with all indicators greater than the median were screened out as core targets..The larger the construction degree value, the darker the color and the larger the graph, the more closely it interacted with other proteins. The top ten targets were AKT1, TP53, IL6, CASP3, VEGFA, JUN, IL1β, EGFR, MAPK3, STAT3.These targets may be the key targets for the treatment of IS with Huoxue Huayu Formula, and only the first 36 core targets with larger degree values were listed in Figure 3.
3.4 GO function enrichment analysis and KEGG pathway enrichment analysis of potential target genes of Wenyang Huayu Formula for IS
Through the Metascape database, GO enrichment analysis obtained 4475 biological process (BP) entries, 367 cell composition (CC) entries and 502 Molecular Function (MF) entries. In bioengineering, the target functions focus on response to inorganic substance, response to cytokine, positive regulation of cell migration, etc.; in cell composition, targets mainly involve transcription regulator complex, membrane raft, vehicle lumen, cyclin-dependent, protein Kinase holoenzyme complex, endoplasmic reticulum lumen, perinuclear region of cytoplasm, etc.; in terms of molecular functions, the targets mainly involve kinase binding, RNA polymerase II-specific DNA-binding transcription factor binding, NF-kappaB binding, etc., see Figure 4. KEGG pathway analysis showed that these key targets were involved in signaling pathways, mainly involving Cellular senescence, FoxO signaling pathway, TNF signaling pathway, Toll-like receptor signaling pathway, Non-alcoholic fatty liver disease, Th1 and Th2 cell differentiation, Pathways of neurodegeneration - multiple diseases, Epithelial cell signaling in Helicobacter pylori infection, etc. The top 20 pathways were shown in Figure 5.
3.5 Molecular docking results
The key targets selected from the core targets of Wenyang Huayu Formula in the treatment of IS were molecularly docked with the main active ingredients. The molecular docking verification showed that 88% with the docking score <-5kcal·mol-1 , that means most of the targets were combined with the ingredients. The heat map of the docking score was shown in Figure 6, and the schematic diagram of part of the docking with the active ingredient molecule was shown in Figure 7. The smaller the docking binding force value, the more stable the binding between the ligand and the receptor, and the more likely the interaction occurs. Among them, the lowest binding force of Stigmasterol to IL-1β was -9.6 kcal·mol (-1 1 kcal≈4.186 kJ).
3.6 Animal experimental verification
3.6.1 The effect of Wenyang Huayu Formula on the neurological function of IS
Compare with the normal control group, the neurological function damage of the model control group was severe, and the Zea Longa score was significantly increased (P<0.01); Compared with nimodipine 30 mg/kg and Wenyang Huayu Formula group, the symptoms of neurological damage were improved, and the Zea Longa score was significantly decreased (P<0.05), as shown in Figure 8.
3.6.2 The protein expressions of TLR4, NF-κB p65 and Caspase-3
Compared with the normal group, the protein expressions of TLR4, NF-κB p65 and Caspase-3 in the rat brain tissue were significantly up-regulated in the model group (P<0.01). Compared with rats, the expressions of TLR4, Caspase-3 and NF-κB p65 in Nimodipine Tablets control group and Wenyang Huayu Formula group were significantly decreased (P<0.05). The expressions of TLR4 and NF-κB p65 proteins in the prescription group were decreased (P<0.05), and the expression of Caspase-3 protein was not statistically significant, as shown in Figure 9.
3.6.3 Effects of Wenyang Huayu Formula on serum TNF-α, IL-6 and IL-1β in mice with IS
The levels of TNF-α, IL-6 and IL-1βof sham group were significantly increased when compared with the model group, the nimodipine control group and the Wenyang Huayu Formula group could significantly reduce the serum levels of TNF-α, IL-6, and IL-1β in mice. IL-1β content, compared with the control group, Wenyang Huayu Formula can significantly reduce the serum TNF-α, IL-6, IL-1β content of rats, as shown in Figure 10.
3.6.4 Tunel staining
It was found that compared with the sham operation group, the apoptosis rate of the model group increased significantly, indicating that the model group induced acute brain injury modeling successfully, and the model group would induce brain cell apoptosis; The apoptosis rate of nimodipine group decreased significantly, and the apoptosis rate of rats gradually decreased (P<0.01). Compared with the control group, the Wenyang Huayu Formula group showed that the apoptosis rate was significantly reduced, and the apoptosis rate of the rats was reduced. The results were shown in Figure 11.
3.6.5 Transmission electron microscope observation
In the sham operation group, the blood-brain barrier structure was acceptable, the perivascular glial cell pedicle structure was acceptable, the glial filaments were abundant, the coupling was good, the endothelial cell morphology was acceptable, the vascular lumen was not atrophied, and the vascular basement membrane was intact. The damage to the blood-brain barrier in the model group was relatively the most serious, mainly in the peripheral blood vessels, with extensive edema and dissolution, slight compression of blood vessels, mild edema of endothelial cells, and blurred structure of the basement membrane. Astrocyte foot plate edema, disintegration. In the nimodipine group, blood-brain barrier damage was second, moderate damage, extravascular matrix edema, tissue dissolution in some areas, disappearance of structure, partial blurring and dissolution of basement membrane, obvious edema of astrocyte foot plate, matrix dissolution, and massive collapse untie. The pictures of the Wenyang Huayu Formula group showed mild damage to the blood-brain barrier, the endothelial cell structure was fair or slightly edema, mainly mild edema of the extravascular matrix, intact astrocyte foot plate membrane, mild edema, and local matrix dissolution.(Figure 12).