Scalable realization of quantum computing to attain substantial speedups over classical computing requires fault tolerance. Conventionally, protocols for fault-tolerant quantum computation (FTQC) demand excessive space overhead of physical qubits per logical qubit. A more recent protocol to achieve constant-space-overhead FTQC using quantum low-density parity-check (LDPC) codes thus attracts considerable attention but suffers from another drawback: it incurs polynomially long time overhead. To address these problems, we here introduce an alternative approach using a concatenation of multiple small-size quantum codes for the constant-space-overhead FTQC rather than a single large-size quantum LDPC code. We develop techniques for concatenating different quantum Hamming codes with growing sizes. As a result, we construct a low-overhead protocol to achieve constant space overhead and only quasi-polylogarithmic time overhead simultaneously. Our protocol accomplishes FTQC even if a decoder has non-constant runtime, unlike the existing constant-space-overhead protocol. These results establish a foundation for FTQC realizing a large class of quantum speedups within feasibly bounded space overhead yet negligibly short time overhead. This achievement opens a promising avenue for the low-overhead FTQC based on code concatenation.